Wall clock time and date at job start Mon Mar 30 2020 00:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35322 * 126.52063 * 2 1 4 4 N 1.30741 * 108.76840 * 179.89795 * 3 2 1 5 5 C 1.33676 * 109.19861 * 0.44911 * 4 3 2 6 6 C 1.35034 * 107.82155 * 359.63900 * 5 4 3 7 7 C 1.50821 * 124.17645 * 180.33389 * 6 5 4 8 8 N 1.47448 * 107.23367 * 348.94413 * 7 6 5 9 9 S 1.65604 * 120.85673 * 223.99751 * 8 7 6 10 10 O 1.42108 * 106.40052 * 203.54216 * 9 8 7 11 11 O 1.42096 * 106.40051 * 336.45978 * 9 8 7 12 12 C 1.76192 * 107.21936 * 90.00094 * 9 8 7 13 13 H 1.08008 * 119.99769 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00286 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00064 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00280 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46774 * 90.00483 * 16 14 12 18 18 H 1.48498 * 109.47573 * 210.00127 * 16 14 12 19 19 H 1.48498 * 109.47395 * 330.00557 * 16 14 12 20 20 C 1.47055 * 118.28437 * 43.97580 * 8 7 6 21 21 C 1.50827 * 127.80345 * 179.57637 * 5 4 3 22 22 H 1.09002 * 109.47391 * 269.68960 * 1 2 3 23 23 H 1.09001 * 109.46813 * 149.69016 * 1 2 3 24 24 H 1.09004 * 109.47041 * 29.69143 * 1 2 3 25 25 H 1.08000 * 125.62093 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.90087 * 108.37340 * 7 6 5 27 27 H 1.08998 * 109.90433 * 229.42967 * 7 6 5 28 28 H 0.96995 * 120.00579 * 179.97438 * 15 14 12 29 29 H 1.09004 * 109.52075 * 55.63239 * 20 8 7 30 30 H 1.09001 * 109.51873 * 175.81118 * 20 8 7 31 31 H 1.09001 * 109.57835 * 42.26019 * 21 5 4 32 32 H 1.09006 * 109.57468 * 281.87388 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.0875 0.0000 4 7 3.5155 0.6889 0.0022 5 6 3.5492 -0.6474 -0.0062 6 6 2.2745 -1.0931 -0.0059 7 6 1.8865 -2.5505 -0.0067 8 7 3.1096 -3.3280 -0.2780 9 16 3.0921 -4.5939 -1.3456 10 8 4.1770 -5.4379 -0.9851 11 8 1.7460 -5.0441 -1.4120 12 6 3.4772 -3.9404 -2.9359 13 1 3.6686 -2.8840 -3.0537 14 6 3.5343 -4.7775 -4.0299 15 7 3.3008 -6.0639 -3.8865 16 14 3.9419 -4.0846 -5.7160 17 1 5.4119 -4.1207 -5.9238 18 1 3.2742 -4.9010 -6.7614 19 1 3.4640 -2.6814 -5.8034 20 6 4.3456 -2.9500 0.4235 21 6 4.7639 -1.5415 -0.0161 22 1 -0.3634 -0.0056 1.0276 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5091 25 1 1.9391 2.1155 0.0004 26 1 1.4795 -2.8267 0.9660 27 1 1.1465 -2.7371 -0.7849 28 1 3.3405 -6.6528 -4.6562 29 1 4.1710 -2.9589 1.4994 30 1 5.1361 -3.6586 0.1760 31 1 5.5111 -1.1502 0.6743 32 1 5.1797 -1.5815 -1.0230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192972890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:06 Heat of formation + Delta-G solvation = -22.889765 kcal Electronic energy + Delta-G solvation = -19458.039108 eV Core-core repulsion = 16353.266235 eV Total energy + Delta-G solvation = -3104.772873 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.03043 -36.61628 -35.34929 -34.16570 -34.00440 -33.08191 -30.49461 -29.65997 -26.94771 -26.12228 -24.29986 -22.79680 -20.72755 -19.40859 -18.34170 -17.30437 -16.66756 -16.21784 -15.80141 -15.14435 -14.94422 -14.60487 -13.97677 -13.64562 -13.46516 -13.23290 -13.10922 -12.79150 -12.40996 -12.06195 -11.85166 -11.65117 -11.28064 -11.21356 -10.94557 -10.60226 -10.35272 -10.31482 -10.14384 -9.73640 -9.34247 -9.24637 -8.97048 -8.33387 -7.87491 -6.70077 -5.31622 2.14991 2.21970 2.90169 3.07223 3.13947 3.21329 3.34115 4.05055 4.42895 4.63419 4.68085 4.74594 4.83706 5.04234 5.29988 5.31669 5.46158 5.60335 5.68266 5.73374 5.88641 5.94031 6.17086 6.18982 6.27742 6.44612 6.51876 6.81282 7.01729 7.33235 7.35293 7.47617 8.00326 8.29654 8.89823 10.23550 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.007418 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.769382 B = 3773.754934 C = 4074.411047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.453 5.453 3 C 0.165 3.835 4 N -0.488 5.488 5 C 0.016 3.984 6 C -0.034 4.034 7 C 0.211 3.789 8 N -1.007 6.007 9 S 2.716 3.284 10 O -0.998 6.998 11 O -1.003 7.003 12 C -1.017 5.017 13 H 0.102 0.898 14 C 0.134 3.866 15 N -0.847 5.847 16 Si 0.918 3.082 17 H -0.266 1.266 18 H -0.275 1.275 19 H -0.263 1.263 20 C 0.125 3.875 21 C -0.052 4.052 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.202 0.798 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.291 0.709 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.375 11.318 6.906 13.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.136 5.136 3 C -0.116 4.116 4 N -0.206 5.206 5 C -0.114 4.114 6 C -0.151 4.151 7 C 0.083 3.917 8 N -0.841 5.841 9 S 2.818 3.182 10 O -0.989 6.989 11 O -0.994 6.994 12 C -1.151 5.151 13 H 0.121 0.879 14 C -0.084 4.084 15 N -0.477 5.477 16 Si 0.742 3.258 17 H -0.191 1.191 18 H -0.200 1.200 19 H -0.187 1.187 20 C -0.001 4.001 21 C -0.092 4.092 22 H 0.095 0.905 23 H 0.107 0.893 24 H 0.105 0.895 25 H 0.219 0.781 26 H 0.091 0.909 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.065 10.727 7.120 13.502 hybrid contribution -0.544 0.628 -1.386 1.616 sum -4.609 11.355 5.734 13.530 Atomic orbital electron populations 1.22064 0.76672 1.04962 1.03500 1.44886 1.07383 1.06546 1.54824 1.24896 0.85409 0.93159 1.08115 1.69959 1.19401 1.11729 1.19540 1.20352 0.93764 0.89944 1.07331 1.21351 0.91576 0.90562 1.11588 1.19441 0.87670 0.82836 1.01780 1.58379 1.13756 1.51047 1.60911 1.00533 0.73064 0.70902 0.73744 1.93360 1.56296 1.64223 1.84982 1.93351 1.38773 1.79325 1.87918 1.30605 1.63933 1.05398 1.15134 0.87926 1.24733 0.89068 0.93644 1.00917 1.69890 1.39870 1.03745 1.34180 0.86192 0.79435 0.79838 0.80307 1.19071 1.19993 1.18743 1.21314 0.86997 0.95431 0.96365 1.20378 0.93273 0.92488 1.03023 0.90527 0.89251 0.89482 0.78101 0.90911 0.88581 0.89883 0.91771 0.87904 0.90044 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.60 11.06 59.85 0.66 1.26 16 2 N -0.45 -6.09 3.14 -121.30 -0.38 -6.48 16 3 C 0.16 2.24 12.58 -89.92 -1.13 1.11 16 4 N -0.49 -8.40 11.25 -10.73 -0.12 -8.52 16 5 C 0.02 0.28 7.01 -82.87 -0.58 -0.30 16 6 C -0.03 -0.58 6.82 -81.81 -0.56 -1.13 16 7 C 0.21 3.69 6.33 -4.62 -0.03 3.66 16 8 N -1.01 -20.59 3.27 -114.24 -0.37 -20.96 16 9 S 2.72 71.31 4.99 -107.50 -0.54 70.78 16 10 O -1.00 -28.51 16.64 -57.17 -0.95 -29.46 16 11 O -1.00 -28.49 16.93 -57.17 -0.97 -29.46 16 12 C -1.02 -28.05 9.74 30.60 0.30 -27.75 16 13 H 0.10 2.68 7.81 -52.48 -0.41 2.27 16 14 C 0.13 3.75 5.46 -17.82 -0.10 3.65 16 15 N -0.85 -24.78 13.19 55.43 0.73 -24.05 16 16 Si 0.92 20.82 29.54 -169.99 -5.02 15.80 16 17 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.26 -5.84 7.11 56.52 0.40 -5.44 16 20 C 0.13 2.20 6.39 -3.55 -0.02 2.18 16 21 C -0.05 -0.87 6.46 -27.63 -0.18 -1.05 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.09 0.78 8.00 -51.93 -0.42 0.36 16 24 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.20 1.81 8.06 -52.49 -0.42 1.38 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.10 1.72 7.46 -51.93 -0.39 1.33 16 28 H 0.29 7.65 8.31 -40.82 -0.34 7.31 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.85 6.96 -51.93 -0.36 1.49 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 287.59 15.07 4.33 4.33 Total: -1.00 -36.88 287.59 -8.59 -45.47 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -3.67 Total: 0.92 kcal Atomic # 6 Polarization: -16.73 SS G_CDS: -1.64 Total: -18.37 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: -0.14 Total: -60.01 kcal Atomic # 8 Polarization: -57.00 SS G_CDS: -1.92 Total: -58.92 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 71.31 SS G_CDS: -0.54 Total: 70.78 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -36.88 -8.59 -45.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.580 kcal (2) G-P(sol) polarization free energy of solvation -36.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds