Wall clock time and date at job start Mon Mar 30 2020 00:49:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35322 * 126.52063 * 2 1 4 4 N 1.30741 * 108.76840 * 179.89795 * 3 2 1 5 5 C 1.33676 * 109.19861 * 0.44911 * 4 3 2 6 6 C 1.35034 * 107.82155 * 359.63900 * 5 4 3 7 7 C 1.50821 * 124.17645 * 180.33389 * 6 5 4 8 8 N 1.47448 * 107.23367 * 348.94413 * 7 6 5 9 9 S 1.65604 * 120.85673 * 223.99751 * 8 7 6 10 10 O 1.42108 * 106.40052 * 203.54216 * 9 8 7 11 11 O 1.42096 * 106.40051 * 336.45978 * 9 8 7 12 12 C 1.76192 * 107.21936 * 90.00094 * 9 8 7 13 13 H 1.08008 * 119.99769 * 359.97438 * 12 9 8 14 14 C 1.37872 * 120.00286 * 179.97438 * 12 9 8 15 15 N 1.31517 * 120.00064 * 0.02562 * 14 12 9 16 16 Si 1.86797 * 120.00280 * 179.97438 * 14 12 9 17 17 H 1.48502 * 109.46774 * 90.00483 * 16 14 12 18 18 H 1.48498 * 109.47573 * 210.00127 * 16 14 12 19 19 H 1.48498 * 109.47395 * 330.00557 * 16 14 12 20 20 C 1.47055 * 118.28437 * 43.97580 * 8 7 6 21 21 C 1.50827 * 127.80345 * 179.57637 * 5 4 3 22 22 H 1.09002 * 109.47391 * 269.68960 * 1 2 3 23 23 H 1.09001 * 109.46813 * 149.69016 * 1 2 3 24 24 H 1.09004 * 109.47041 * 29.69143 * 1 2 3 25 25 H 1.08000 * 125.62093 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.90087 * 108.37340 * 7 6 5 27 27 H 1.08998 * 109.90433 * 229.42967 * 7 6 5 28 28 H 0.96995 * 120.00579 * 179.97438 * 15 14 12 29 29 H 1.09004 * 109.52075 * 55.63239 * 20 8 7 30 30 H 1.09001 * 109.51873 * 175.81118 * 20 8 7 31 31 H 1.09001 * 109.57835 * 42.26019 * 21 5 4 32 32 H 1.09006 * 109.57468 * 281.87388 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2703 1.0875 0.0000 4 7 3.5155 0.6889 0.0022 5 6 3.5492 -0.6474 -0.0062 6 6 2.2745 -1.0931 -0.0059 7 6 1.8865 -2.5505 -0.0067 8 7 3.1096 -3.3280 -0.2780 9 16 3.0921 -4.5939 -1.3456 10 8 4.1770 -5.4379 -0.9851 11 8 1.7460 -5.0441 -1.4120 12 6 3.4772 -3.9404 -2.9359 13 1 3.6686 -2.8840 -3.0537 14 6 3.5343 -4.7775 -4.0299 15 7 3.3008 -6.0639 -3.8865 16 14 3.9419 -4.0846 -5.7160 17 1 5.4119 -4.1207 -5.9238 18 1 3.2742 -4.9010 -6.7614 19 1 3.4640 -2.6814 -5.8034 20 6 4.3456 -2.9500 0.4235 21 6 4.7639 -1.5415 -0.0161 22 1 -0.3634 -0.0056 1.0276 23 1 -0.3633 -0.8872 -0.5187 24 1 -0.3633 0.8928 -0.5091 25 1 1.9391 2.1155 0.0004 26 1 1.4795 -2.8267 0.9660 27 1 1.1465 -2.7371 -0.7849 28 1 3.3405 -6.6528 -4.6562 29 1 4.1710 -2.9589 1.4994 30 1 5.1361 -3.6586 0.1760 31 1 5.5111 -1.1502 0.6743 32 1 5.1797 -1.5815 -1.0230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192972890.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:05 Heat of formation + Delta-G solvation = -50.413899 kcal Electronic energy + Delta-G solvation = -19459.232644 eV Core-core repulsion = 16353.266235 eV Total energy + Delta-G solvation = -3105.966409 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.16129 -38.05353 -37.49751 -36.17710 -35.27385 -35.14938 -31.82262 -30.96855 -28.26888 -27.84268 -25.62713 -24.15767 -21.86705 -21.05230 -20.04096 -18.99401 -18.33784 -17.67152 -17.16874 -16.79335 -16.62768 -16.05087 -15.50728 -15.37825 -14.75339 -14.48693 -14.44793 -14.00754 -13.79118 -13.51185 -13.30555 -13.16008 -13.04319 -12.91670 -12.65869 -12.53327 -12.34999 -12.29140 -11.88878 -11.27392 -11.07338 -10.88914 -10.42968 -9.95685 -9.08718 -8.76815 -7.49514 0.22064 1.06815 1.29975 1.30893 1.46382 1.92443 2.15323 2.18048 2.55136 2.72430 3.52697 3.72492 3.75043 3.93690 4.08031 4.13602 4.26716 4.37279 4.40318 4.46455 4.50966 4.65587 4.74837 4.81013 4.86616 5.12637 5.20987 5.27233 5.44275 5.76834 5.83274 5.89410 6.37924 6.77001 7.14935 8.18675 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021115 B = 0.007418 C = 0.006871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.769382 B = 3773.754934 C = 4074.411047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.449 5.449 3 C 0.182 3.818 4 N -0.526 5.526 5 C -0.010 4.010 6 C -0.052 4.052 7 C 0.208 3.792 8 N -1.005 6.005 9 S 2.726 3.274 10 O -1.031 7.031 11 O -1.034 7.034 12 C -1.038 5.038 13 H 0.108 0.892 14 C 0.075 3.925 15 N -0.891 5.891 16 Si 0.983 3.017 17 H -0.254 1.254 18 H -0.258 1.258 19 H -0.256 1.256 20 C 0.122 3.878 21 C -0.049 4.049 22 H 0.099 0.901 23 H 0.083 0.917 24 H 0.118 0.882 25 H 0.248 0.752 26 H 0.099 0.901 27 H 0.086 0.914 28 H 0.300 0.700 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 13.719 6.851 16.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.132 5.132 3 C -0.099 4.099 4 N -0.245 5.245 5 C -0.139 4.139 6 C -0.170 4.170 7 C 0.081 3.919 8 N -0.842 5.842 9 S 2.828 3.172 10 O -1.022 7.022 11 O -1.024 7.024 12 C -1.171 5.171 13 H 0.126 0.874 14 C -0.138 4.138 15 N -0.523 5.523 16 Si 0.802 3.198 17 H -0.178 1.178 18 H -0.182 1.182 19 H -0.179 1.179 20 C -0.004 4.004 21 C -0.089 4.089 22 H 0.117 0.883 23 H 0.102 0.898 24 H 0.137 0.863 25 H 0.264 0.736 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.110 0.890 29 H 0.112 0.888 30 H 0.110 0.890 31 H 0.122 0.878 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.864 13.118 7.079 15.680 hybrid contribution -0.367 -0.015 -1.267 1.319 sum -5.230 13.104 5.812 15.259 Atomic orbital electron populations 1.22448 0.73750 1.06306 1.05437 1.45141 1.09092 1.05365 1.53572 1.25802 0.84501 0.94757 1.04874 1.69931 1.21668 1.11329 1.21575 1.20520 0.94254 0.90681 1.08482 1.21148 0.92045 0.90778 1.13019 1.19586 0.86097 0.83450 1.02732 1.57860 1.15911 1.50462 1.59991 0.99883 0.71908 0.71510 0.73914 1.93306 1.57136 1.66245 1.85468 1.93297 1.39895 1.80688 1.88500 1.30939 1.63984 1.05808 1.16388 0.87364 1.25899 0.88506 0.93860 1.05529 1.69962 1.41072 1.05262 1.35964 0.85229 0.79967 0.79484 0.75145 1.17766 1.18184 1.17939 1.21533 0.85510 0.95660 0.97673 1.20318 0.93953 0.92034 1.02558 0.88253 0.89842 0.86342 0.73577 0.88327 0.89596 0.88987 0.88814 0.89013 0.87818 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.83 11.06 127.77 1.41 2.24 16 2 N -0.45 -10.83 3.14 -537.70 -1.69 -12.52 16 3 C 0.18 4.35 12.58 180.10 2.27 6.61 16 4 N -0.53 -17.12 11.25 -187.86 -2.11 -19.23 16 5 C -0.01 -0.34 7.01 41.58 0.29 -0.05 16 6 C -0.05 -1.68 6.82 41.21 0.28 -1.40 16 7 C 0.21 7.17 6.33 85.49 0.54 7.72 16 8 N -1.01 -41.37 3.27 -515.35 -1.69 -43.06 16 9 S 2.73 146.85 4.99 -56.49 -0.28 146.57 16 10 O -1.03 -60.85 16.64 -128.00 -2.13 -62.98 16 11 O -1.03 -60.32 16.93 -128.00 -2.17 -62.49 16 12 C -1.04 -58.24 9.74 67.73 0.66 -57.58 16 13 H 0.11 5.74 7.81 -2.91 -0.02 5.72 16 14 C 0.08 4.23 5.46 84.65 0.46 4.69 16 15 N -0.89 -53.10 13.19 21.45 0.28 -52.82 16 16 Si 0.98 42.19 29.54 68.60 2.03 44.22 16 17 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 20 C 0.12 4.25 6.39 86.40 0.55 4.81 16 21 C -0.05 -1.63 6.46 30.01 0.19 -1.44 16 22 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 23 H 0.08 1.27 8.00 -2.39 -0.02 1.25 16 24 H 0.12 0.88 8.14 -2.38 -0.02 0.86 16 25 H 0.25 3.21 8.06 -2.91 -0.02 3.18 16 26 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 27 H 0.09 3.09 7.46 -2.39 -0.02 3.07 16 28 H 0.30 16.00 8.31 -92.71 -0.77 15.23 16 29 H 0.09 2.71 8.14 -2.38 -0.02 2.69 16 30 H 0.09 3.38 6.96 -2.39 -0.02 3.36 16 31 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 32 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -81.39 287.59 0.04 -81.36 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 1.13 Total: 15.34 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 6.66 Total: -34.39 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.20 Total: -127.62 kcal Atomic # 8 Polarization: -121.17 SS G_CDS: -4.30 Total: -125.47 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Atomic # 16 Polarization: 146.85 SS G_CDS: -0.28 Total: 146.57 kcal Total: -81.39 0.04 -81.36 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192972890.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.943 kcal (2) G-P(sol) polarization free energy of solvation -81.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds