Wall clock time and date at job start Mon Mar 30 2020 00:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35764 * 116.99883 * 2 1 4 4 C 1.38827 * 119.88991 * 0.02562 * 3 2 1 5 5 C 1.38035 * 120.09604 * 179.97438 * 4 3 2 6 6 F 1.35096 * 120.06139 * 180.02562 * 5 4 3 7 7 C 1.40044 * 119.87181 * 359.97438 * 5 4 3 8 8 C 1.47347 * 120.10200 * 179.97438 * 7 5 4 9 9 O 1.21632 * 120.00346 * 303.89085 * 8 7 5 10 10 N 1.34777 * 119.99938 * 123.89845 * 8 7 5 11 11 C 1.46502 * 120.00014 * 3.72193 * 10 8 7 12 12 C 1.36918 * 120.00304 * 183.71991 * 10 8 7 13 13 H 1.08008 * 119.99586 * 351.49787 * 12 10 8 14 14 C 1.39008 * 120.00286 * 171.50309 * 12 10 8 15 15 N 1.31382 * 119.99948 * 7.64035 * 14 12 10 16 16 Si 1.86798 * 120.00086 * 187.64733 * 14 12 10 17 17 H 1.48505 * 109.47348 * 89.99541 * 16 14 12 18 18 H 1.48500 * 109.47294 * 209.99431 * 16 14 12 19 19 H 1.48501 * 109.47038 * 329.99597 * 16 14 12 20 20 C 1.39867 * 119.78456 * 0.02562 * 7 5 4 21 21 C 1.37792 * 119.90297 * 359.72464 * 20 7 5 22 22 F 1.35100 * 119.93925 * 180.27160 * 21 20 7 23 23 H 1.08999 * 109.46785 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47674 * 59.99002 * 1 2 3 25 25 H 1.09004 * 109.46851 * 299.99319 * 1 2 3 26 26 H 1.08000 * 119.95225 * 359.96861 * 4 3 2 27 27 H 1.08998 * 109.46657 * 356.60913 * 11 10 8 28 28 H 1.08994 * 109.47379 * 116.61417 * 11 10 8 29 29 H 1.09001 * 109.46843 * 236.61282 * 11 10 8 30 30 H 0.97006 * 119.99908 * 180.02562 * 15 14 12 31 31 H 1.08007 * 120.04644 * 180.02562 * 20 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2097 0.0000 4 6 1.2870 2.3725 0.0005 5 6 1.9092 3.6047 0.0011 6 9 1.1705 4.7358 0.0021 7 6 3.3076 3.6799 0.0016 8 6 3.9771 4.9925 0.0016 9 8 3.7305 5.8010 -0.8730 10 7 4.8628 5.2972 0.9707 11 6 5.2212 4.2947 1.9771 12 6 5.4276 6.5437 1.0147 13 1 5.2721 7.2360 0.2004 14 6 6.2013 6.9181 2.1072 15 7 6.5155 6.0313 3.0244 16 14 6.7940 8.6819 2.2715 17 1 5.7895 9.4734 3.0265 18 1 8.0888 8.7034 2.9983 19 1 6.9747 9.2712 0.9205 20 6 4.0666 2.5051 0.0011 21 6 3.4360 1.2799 0.0057 22 9 4.1684 0.1447 0.0108 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5140 -0.8898 25 1 -0.3633 0.5138 0.8901 26 1 0.2086 2.3130 0.0004 27 1 4.6311 3.3924 1.8172 28 1 6.2811 4.0559 1.8906 29 1 5.0179 4.6902 2.9723 30 1 7.0551 6.2927 3.7870 31 1 5.1453 2.5582 0.0019 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193971357.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:21 Heat of formation + Delta-G solvation = -130.656778 kcal Electronic energy + Delta-G solvation = -20793.610612 eV Core-core repulsion = 17098.031473 eV Total energy + Delta-G solvation = -3695.579139 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 271.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.09005 -49.94161 -41.33012 -40.38374 -38.07019 -36.81180 -33.79059 -31.95107 -31.28592 -28.54242 -28.27353 -26.56653 -24.36217 -23.98852 -21.46687 -19.69499 -19.16573 -18.82979 -18.48032 -17.78403 -17.36074 -17.08290 -16.56646 -16.33746 -16.13546 -15.95104 -15.77428 -15.67893 -15.40819 -14.92580 -14.30690 -13.88551 -13.62042 -13.39498 -13.20265 -12.87720 -12.85000 -12.68157 -12.51640 -12.41421 -12.13870 -11.83683 -11.08133 -10.64296 -10.10343 -10.00666 -9.36050 -8.33490 -5.98755 -0.33553 -0.24285 1.34214 1.40528 1.53281 1.77109 1.96577 2.14315 2.26520 2.82232 2.95982 2.96635 3.09527 3.43775 3.63949 3.84652 4.20080 4.26783 4.41907 4.45402 4.57878 4.60961 4.75420 4.84744 4.85564 5.09834 5.30780 5.36661 5.45920 5.93155 6.07105 6.36744 7.04191 7.31795 7.86686 8.56879 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.030586 B = 0.005348 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.224376 B = 5234.400778 C = 5758.992709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.311 6.311 3 C 0.146 3.854 4 C -0.203 4.203 5 C 0.152 3.848 6 F -0.134 7.134 7 C -0.157 4.157 8 C 0.461 3.539 9 O -0.632 6.632 10 N -0.440 5.440 11 C 0.112 3.888 12 C -0.345 4.345 13 H 0.081 0.919 14 C 0.001 3.999 15 N -0.886 5.886 16 Si 0.998 3.002 17 H -0.270 1.270 18 H -0.265 1.265 19 H -0.273 1.273 20 C -0.060 4.060 21 C 0.055 3.945 22 F -0.128 7.128 23 H 0.130 0.870 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.191 0.809 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.277 0.723 31 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.727 -12.947 -0.504 16.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.223 6.223 3 C 0.098 3.902 4 C -0.222 4.222 5 C 0.131 3.869 6 F -0.112 7.112 7 C -0.162 4.162 8 C 0.250 3.750 9 O -0.522 6.522 10 N -0.155 5.155 11 C -0.030 4.030 12 C -0.472 4.472 13 H 0.099 0.901 14 C -0.201 4.201 15 N -0.525 5.525 16 Si 0.821 3.179 17 H -0.195 1.195 18 H -0.189 1.189 19 H -0.198 1.198 20 C -0.080 4.080 21 C 0.035 3.965 22 F -0.106 7.106 23 H 0.148 0.852 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.208 0.792 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.608 -12.775 -0.679 15.999 hybrid contribution 0.376 1.165 0.096 1.227 sum -9.233 -11.610 -0.584 14.845 Atomic orbital electron populations 1.23633 0.74925 1.06725 1.03287 1.86139 1.24734 1.23993 1.87479 1.18658 0.89930 0.85820 0.95836 1.21074 1.02883 0.87940 1.10330 1.17540 0.87144 0.82740 0.99454 1.91513 1.76245 1.50196 1.93263 1.19703 0.92995 0.94185 1.09269 1.18001 0.84257 0.87722 0.84993 1.90591 1.68738 1.52598 1.40224 1.43885 1.34768 1.12656 1.24204 1.22020 0.99409 0.89101 0.92485 1.19825 1.29984 0.91259 1.06167 0.90121 1.26166 0.95826 1.03927 0.94181 1.70223 1.35998 1.34360 1.11912 0.84867 0.78000 0.76520 0.78548 1.19548 1.18942 1.19771 1.20934 1.01433 0.88384 0.97250 1.16631 0.86525 0.82194 1.11112 1.91508 1.76711 1.47945 1.94457 0.85180 0.90726 0.90678 0.79220 0.92132 0.92797 0.90901 0.91282 0.82570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 9.81 113.37 1.11 1.20 16 2 O -0.31 -6.58 10.34 -90.91 -0.94 -7.52 16 3 C 0.15 3.74 6.70 22.65 0.15 3.89 16 4 C -0.20 -5.17 8.99 22.36 0.20 -4.96 16 5 C 0.15 5.45 7.27 22.66 0.16 5.61 16 6 F -0.13 -5.36 16.70 44.97 0.75 -4.61 16 7 C -0.16 -6.44 4.81 -20.05 -0.10 -6.53 16 8 C 0.46 24.31 6.79 86.64 0.59 24.89 16 9 O -0.63 -38.39 16.53 -4.13 -0.07 -38.46 16 10 N -0.44 -23.67 3.02 -662.73 -2.00 -25.67 16 11 C 0.11 5.18 8.15 127.77 1.04 6.22 16 12 C -0.34 -19.91 9.54 84.08 0.80 -19.11 16 13 H 0.08 4.98 7.19 -2.91 -0.02 4.96 16 14 C 0.00 0.07 5.45 84.94 0.46 0.53 16 15 N -0.89 -45.47 9.49 21.67 0.21 -45.26 16 16 Si 1.00 42.06 29.56 68.60 2.03 44.09 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 19 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 20 C -0.06 -2.07 7.39 22.56 0.17 -1.90 16 21 C 0.06 1.65 7.30 22.41 0.16 1.81 16 22 F -0.13 -3.75 17.10 44.97 0.77 -2.98 16 23 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 24 H 0.07 0.65 7.65 -2.39 -0.02 0.64 16 25 H 0.07 0.65 7.65 -2.38 -0.02 0.64 16 26 H 0.19 3.24 6.27 -2.91 -0.02 3.22 16 27 H 0.06 2.37 4.59 -2.39 -0.01 2.36 16 28 H 0.05 2.53 7.56 -2.39 -0.02 2.51 16 29 H 0.07 3.57 6.48 -2.39 -0.02 3.56 16 30 H 0.28 13.16 8.31 -92.70 -0.77 12.39 16 31 H 0.16 5.23 7.51 -2.91 -0.02 5.21 16 Total: -1.00 -70.27 277.62 6.69 -63.58 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.19 Total: 5.19 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: 4.76 Total: 11.65 kcal Atomic # 7 Polarization: -69.14 SS G_CDS: -1.80 Total: -70.93 kcal Atomic # 8 Polarization: -44.97 SS G_CDS: -1.01 Total: -45.98 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 1.52 Total: -7.59 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -70.27 6.69 -63.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193971357.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.077 kcal (2) G-P(sol) polarization free energy of solvation -70.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds