Wall clock time and date at job start Mon Mar 30 2020 01:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47320 * 2 1 4 4 C 1.52994 * 109.47320 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.47257 * 180.02562 * 4 3 2 6 6 C 1.36994 * 119.99843 * 270.00173 * 5 4 3 7 7 H 1.07994 * 120.00022 * 126.19500 * 6 5 4 8 8 C 1.38970 * 119.99534 * 306.19850 * 6 5 4 9 9 N 1.31417 * 119.99639 * 174.21052 * 8 6 5 10 10 Si 1.86797 * 120.00267 * 354.20826 * 8 6 5 11 11 H 1.48502 * 109.47235 * 94.97171 * 10 8 6 12 12 H 1.48501 * 109.46917 * 214.96952 * 10 8 6 13 13 H 1.48492 * 109.47134 * 334.96876 * 10 8 6 14 14 C 1.34775 * 120.00545 * 89.99682 * 5 4 3 15 15 O 1.21632 * 119.99382 * 3.26395 * 14 5 4 16 16 C 1.47311 * 120.00414 * 183.53327 * 14 5 4 17 17 C 1.38130 * 126.42707 * 351.92331 * 16 14 5 18 18 N 1.34265 * 107.42285 * 179.83380 * 17 16 14 19 19 H 0.97006 * 125.73438 * 180.15911 * 18 17 16 20 20 N 1.39922 * 108.52686 * 0.43052 * 18 17 16 21 21 C 1.30530 * 108.91487 * 359.72609 * 20 18 17 22 22 Cl 1.73598 * 126.00390 * 180.02562 * 21 20 18 23 23 H 1.09010 * 109.47240 * 299.99800 * 1 2 3 24 24 H 1.09003 * 109.47480 * 59.99893 * 1 2 3 25 25 H 1.08995 * 109.47573 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47139 * 240.00404 * 2 1 3 27 27 H 1.09003 * 109.47480 * 120.00107 * 2 1 3 28 28 H 1.09010 * 109.46801 * 59.99931 * 3 2 1 29 29 H 1.08997 * 109.47529 * 300.00782 * 3 2 1 30 30 H 1.08993 * 109.47139 * 60.00404 * 4 3 2 31 31 H 1.09003 * 109.47480 * 300.00107 * 4 3 2 32 32 H 0.97002 * 119.99942 * 180.02562 * 9 8 6 33 33 H 1.07998 * 126.29057 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 7 4.0583 2.8237 0.0013 6 6 4.2871 3.4698 -1.1849 7 1 3.8250 4.4270 -1.3763 8 6 5.1138 2.8935 -2.1418 9 7 5.2435 3.4557 -3.3225 10 14 6.0406 1.3197 -1.7498 11 1 5.2602 0.1523 -2.2328 12 1 7.3637 1.3436 -2.4235 13 1 6.2346 1.2122 -0.2815 14 6 4.2824 3.4588 1.1687 15 8 4.1362 2.8665 2.2209 16 6 4.6987 4.8719 1.1704 17 6 5.0484 5.6253 0.0668 18 7 5.3572 6.8572 0.5025 19 1 5.6375 7.6011 -0.0535 20 7 5.2126 6.8860 1.8939 21 6 4.8210 5.7099 2.3030 22 17 4.5053 5.2547 3.9482 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6766 1.9563 0.8901 29 1 1.6766 1.9564 -0.8899 30 1 3.9336 0.9286 -0.8891 31 1 3.9330 0.9288 0.8908 32 1 5.8202 3.0532 -3.9906 33 1 5.0668 5.2867 -0.9586 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001194956921.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:18 Heat of formation + Delta-G solvation = 17.578679 kcal Electronic energy + Delta-G solvation = -19036.225591 eV Core-core repulsion = 15931.163855 eV Total energy + Delta-G solvation = -3105.061736 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.32354 -40.23044 -37.72902 -37.11235 -35.64978 -33.80238 -32.44409 -31.75412 -29.58740 -26.92481 -25.08445 -23.47069 -22.53919 -22.04783 -20.90630 -19.98806 -17.80918 -17.62772 -16.78357 -16.32069 -16.22216 -16.10023 -15.78174 -15.47457 -14.68596 -14.32435 -14.21342 -14.14488 -13.75140 -13.24072 -13.09087 -12.99404 -12.92941 -12.56666 -12.09057 -12.01837 -11.81246 -11.77945 -11.74567 -11.35016 -11.00172 -10.50503 -10.46805 -9.81099 -9.39847 -8.45102 -6.28042 0.55881 0.66529 0.92616 1.25798 1.38396 1.48255 2.13807 2.23089 2.59012 2.75158 3.00534 3.77536 4.01174 4.11153 4.27277 4.34759 4.39771 4.53888 4.62740 4.69781 4.82728 4.96587 4.99071 5.10408 5.13192 5.29388 5.41245 5.48519 5.63478 6.08078 6.17025 6.28511 6.42869 6.99778 7.46670 7.87326 8.62331 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.014837 B = 0.008358 C = 0.006150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.699386 B = 3349.318509 C = 4551.653152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.104 3.896 5 N -0.480 5.480 6 C -0.342 4.342 7 H 0.100 0.900 8 C 0.049 3.951 9 N -0.889 5.889 10 Si 0.916 3.084 11 H -0.261 1.261 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.559 3.441 15 O -0.604 6.604 16 C -0.291 4.291 17 C 0.145 3.855 18 N -0.440 5.440 19 H 0.463 0.537 20 N -0.307 5.307 21 C 0.154 3.846 22 Cl 0.019 6.981 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.281 0.719 33 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.440 0.587 2.530 3.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.018 4.018 5 N -0.201 5.201 6 C -0.469 4.469 7 H 0.117 0.883 8 C -0.157 4.157 9 N -0.525 5.525 10 Si 0.743 3.257 11 H -0.186 1.186 12 H -0.213 1.213 13 H -0.199 1.199 14 C 0.350 3.650 15 O -0.489 6.489 16 C -0.306 4.306 17 C -0.007 4.007 18 N -0.150 5.150 19 H 0.313 0.687 20 N -0.133 5.133 21 C -0.039 4.039 22 Cl 0.047 6.953 23 H 0.071 0.929 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -2.159 1.405 3.350 4.226 hybrid contribution 0.501 -1.118 -0.475 1.315 sum -1.658 0.287 2.875 3.331 Atomic orbital electron populations 1.21712 0.94377 1.02300 1.01800 1.21480 0.97150 0.95156 1.02114 1.21769 0.94264 0.98047 1.01419 1.21658 0.95419 0.84461 1.00277 1.43536 1.59217 1.12332 1.05006 1.19008 1.28669 1.06945 0.92298 0.88274 1.25820 0.95691 0.99415 0.94811 1.69669 1.37500 1.40896 1.04458 0.86208 0.78843 0.81875 0.78803 1.18646 1.21290 1.19909 1.17727 0.77911 0.85744 0.83612 1.90624 1.57641 1.68430 1.32192 1.20147 1.21517 0.97003 0.91955 1.25197 0.90265 0.83205 1.02043 1.46128 1.52539 1.12079 1.04259 0.68712 1.76907 1.25422 1.19172 0.91829 1.22724 1.00342 0.92191 0.88658 1.98364 1.93492 1.91042 1.12389 0.92937 0.92708 0.91196 0.91748 0.91805 0.93244 0.92118 0.92304 0.92089 0.90866 0.75002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.91 71.98 0.71 -2.73 16 2 C -0.12 -3.47 5.93 30.59 0.18 -3.29 16 3 C -0.12 -4.21 5.54 30.59 0.17 -4.04 16 4 C 0.10 4.36 4.02 86.38 0.35 4.71 16 5 N -0.48 -21.89 1.95 -639.37 -1.24 -23.13 16 6 C -0.34 -15.67 6.79 84.06 0.57 -15.10 16 7 H 0.10 4.62 6.07 -2.91 -0.02 4.60 16 8 C 0.05 2.29 5.45 84.93 0.46 2.75 16 9 N -0.89 -42.80 13.96 21.67 0.30 -42.50 16 10 Si 0.92 39.32 24.90 68.60 1.71 41.03 16 11 H -0.26 -10.66 6.98 99.48 0.69 -9.96 16 12 H -0.29 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.27 -12.53 6.94 99.48 0.69 -11.84 16 14 C 0.56 26.33 7.63 86.63 0.66 26.99 16 15 O -0.60 -30.36 15.31 -4.13 -0.06 -30.43 16 16 C -0.29 -12.31 6.03 -20.13 -0.12 -12.44 16 17 C 0.14 5.22 10.26 84.30 0.86 6.09 16 18 N -0.44 -13.13 7.28 -56.26 -0.41 -13.54 16 19 H 0.46 9.50 8.96 -213.43 -1.91 7.59 16 20 N -0.31 -10.85 12.63 -48.94 -0.62 -11.47 16 21 C 0.15 6.10 7.88 85.67 0.67 6.77 16 22 Cl 0.02 0.72 28.03 -2.72 -0.08 0.64 16 23 H 0.05 1.24 8.14 -2.38 -0.02 1.23 16 24 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 25 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 28 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 29 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.06 2.45 4.31 -2.39 -0.01 2.44 16 31 H 0.06 2.62 7.38 -2.39 -0.02 2.60 16 32 H 0.28 12.88 8.31 -92.71 -0.77 12.10 16 33 H 0.23 8.71 4.76 -2.91 -0.01 8.70 16 Total: -1.00 -56.77 291.32 3.34 -53.43 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -0.79 Total: 16.25 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 4.52 Total: 9.71 kcal Atomic # 7 Polarization: -88.67 SS G_CDS: -1.97 Total: -90.64 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -0.06 Total: -30.43 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.71 Total: 41.03 kcal Atomic # 17 Polarization: 0.72 SS G_CDS: -0.08 Total: 0.64 kcal Total: -56.77 3.34 -53.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001194956921.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.011 kcal (2) G-P(sol) polarization free energy of solvation -56.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds