Wall clock time and date at job start Mon Mar 30 2020 01:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99727 * 2 1 4 4 C 1.50696 * 109.47000 * 293.95191 * 3 2 1 5 5 H 1.07999 * 120.00020 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00135 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99897 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99614 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47229 * 89.99948 * 8 6 4 10 10 H 1.48501 * 109.46621 * 210.00080 * 8 6 4 11 11 H 1.48492 * 109.47292 * 329.99312 * 8 6 4 12 12 C 1.46903 * 110.99907 * 123.94720 * 2 1 3 13 13 C 1.52997 * 109.46827 * 66.05023 * 12 2 1 14 14 C 1.50702 * 109.47100 * 179.97438 * 13 12 2 15 15 C 1.38250 * 119.98297 * 265.25498 * 14 13 12 16 16 C 1.38180 * 120.03849 * 180.29853 * 15 14 13 17 17 C 1.38490 * 120.00167 * 359.72524 * 16 15 14 18 18 F 1.35100 * 120.02139 * 180.02562 * 17 16 15 19 19 C 1.38416 * 119.96045 * 0.02562 * 17 16 15 20 20 C 1.38341 * 119.97819 * 85.00185 * 14 13 12 21 21 Cl 1.73599 * 120.00413 * 359.97438 * 20 14 13 22 22 H 1.08993 * 109.47553 * 296.04615 * 1 2 3 23 23 H 1.08997 * 109.47299 * 56.05279 * 1 2 3 24 24 H 1.09002 * 109.46651 * 176.04735 * 1 2 3 25 25 H 1.09003 * 109.46996 * 53.94880 * 3 2 1 26 26 H 1.08997 * 109.46833 * 173.95032 * 3 2 1 27 27 H 0.97008 * 119.99772 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47444 * 306.05404 * 12 2 1 29 29 H 1.08998 * 109.47245 * 186.04846 * 12 2 1 30 30 H 1.09005 * 109.47281 * 60.00258 * 13 12 2 31 31 H 1.09004 * 109.47486 * 300.00068 * 13 12 2 32 32 H 1.07999 * 119.98219 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.99944 * 179.70122 * 16 15 14 34 34 H 1.08002 * 120.01901 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5290 7 7 1.7151 3.9385 -2.6623 8 14 3.0019 4.2754 -0.2319 9 1 4.4540 4.0618 -0.4573 10 1 2.6946 5.7254 -0.3238 11 1 2.6314 3.7755 1.1163 12 6 1.9954 -0.7659 1.1377 13 6 1.6315 -2.2425 0.9705 14 6 2.1721 -3.0283 2.1373 15 6 3.4003 -3.6552 2.0384 16 6 3.8942 -4.3812 3.1053 17 6 3.1615 -4.4764 4.2766 18 9 3.6442 -5.1856 5.3202 19 6 1.9341 -3.8445 4.3775 20 6 1.4413 -3.1176 3.3085 21 17 -0.0976 -2.3240 3.4343 22 1 -0.3634 0.4512 0.9232 23 1 -0.3634 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0708 25 1 1.5609 1.9274 0.8309 26 1 3.0796 1.3445 0.1083 27 1 1.9903 4.8545 -2.8246 28 1 1.5610 -0.3872 2.0628 29 1 3.0797 -0.6610 1.1758 30 1 2.0659 -2.6213 0.0453 31 1 0.5472 -2.3475 0.9324 32 1 3.9720 -3.5812 1.1252 33 1 4.8516 -4.8747 3.0257 34 1 1.3620 -3.9177 5.2906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209109806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:57 Heat of formation + Delta-G solvation = -27.937265 kcal Electronic energy + Delta-G solvation = -17961.981851 eV Core-core repulsion = 14835.026434 eV Total energy + Delta-G solvation = -3126.955417 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.19076 -39.65125 -36.91632 -36.62568 -33.26998 -32.15096 -31.21875 -28.75332 -27.33894 -25.34282 -23.39646 -22.77665 -21.08993 -20.01935 -18.07384 -16.97806 -16.82100 -16.00585 -15.89529 -15.00367 -14.79842 -14.45366 -14.30162 -13.97520 -13.81569 -13.61008 -12.97121 -12.75018 -12.36762 -11.96479 -11.82023 -11.62447 -11.48754 -11.31499 -11.05423 -10.98903 -10.59930 -10.48684 -10.23930 -9.89373 -9.31259 -9.24624 -8.72955 -8.57032 -7.38611 -6.05388 -4.02595 0.72639 0.81059 1.86480 3.15780 3.28138 3.35720 3.37984 3.95767 4.39528 4.41890 4.48682 4.59974 4.87336 5.02911 5.24152 5.27413 5.33095 5.51122 5.61610 5.69287 5.83705 5.90407 5.93142 6.10479 6.24908 6.32271 6.38386 6.47791 6.69834 6.87680 6.99898 7.58640 7.88911 8.04161 8.65546 9.03223 9.56500 11.07721 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.004125 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.763449 B = 6786.739141 C = 7139.943155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.530 5.530 3 C 0.162 3.838 4 C -0.509 4.509 5 H 0.081 0.919 6 C 0.068 3.932 7 N -0.901 5.901 8 Si 0.874 3.126 9 H -0.275 1.275 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.060 3.940 13 C -0.084 4.084 14 C -0.071 4.071 15 C -0.075 4.075 16 C -0.147 4.147 17 C 0.100 3.900 18 F -0.137 7.137 19 C -0.146 4.146 20 C -0.009 4.009 21 Cl -0.051 7.051 22 H 0.011 0.989 23 H 0.079 0.921 24 H 0.049 0.951 25 H -0.012 1.012 26 H 0.023 0.977 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.146 0.854 33 H 0.141 0.859 34 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.275 -17.274 13.693 22.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.254 5.254 3 C 0.036 3.964 4 C -0.547 4.547 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.540 5.540 8 Si 0.701 3.299 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.193 1.193 12 C -0.069 4.069 13 C -0.121 4.121 14 C -0.073 4.073 15 C -0.093 4.093 16 C -0.165 4.165 17 C 0.080 3.920 18 F -0.115 7.115 19 C -0.166 4.166 20 C -0.036 4.036 21 Cl -0.021 7.021 22 H 0.030 0.970 23 H 0.098 0.902 24 H 0.068 0.932 25 H 0.006 0.994 26 H 0.041 0.959 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.086 0.914 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.325 -17.264 13.209 21.778 hybrid contribution 0.255 0.953 1.690 1.957 sum 1.581 -16.311 14.899 22.148 Atomic orbital electron populations 1.22280 0.88295 0.99959 1.00816 1.61939 1.07451 1.16410 1.39581 1.20183 0.94860 0.84114 0.97292 1.21037 1.35588 0.97212 1.00857 0.90072 1.24892 0.95811 0.97352 0.95253 1.69894 1.46937 1.13308 1.23836 0.86883 0.80919 0.79322 0.82778 1.20123 1.21193 1.19309 1.22016 1.00022 0.91814 0.93033 1.20759 1.01944 0.94695 0.94751 1.20025 0.94339 0.98071 0.94827 1.20989 0.94340 0.95072 0.98875 1.21258 1.01201 1.01741 0.92339 1.17434 0.93555 0.95689 0.85285 1.91514 1.87784 1.76097 1.56132 1.20933 0.95970 0.99798 0.99885 1.20567 0.89591 0.98554 0.94920 1.98398 1.27312 1.78498 1.97936 0.97040 0.90202 0.93214 0.99405 0.95877 0.92672 0.95477 0.91375 0.89401 0.89988 0.83630 0.84134 0.83867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.14 60.06 0.55 1.21 16 2 N -0.53 -10.86 4.75 -244.37 -1.16 -12.02 16 3 C 0.16 3.91 3.79 -4.97 -0.02 3.90 16 4 C -0.51 -14.38 9.01 -34.44 -0.31 -14.69 16 5 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 8 Si 0.87 21.48 27.47 -169.99 -4.67 16.81 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.40 6.54 56.52 0.37 -6.03 16 12 C 0.06 0.99 4.94 -3.82 -0.02 0.97 16 13 C -0.08 -1.11 4.78 -27.88 -0.13 -1.24 16 14 C -0.07 -0.82 5.14 -104.58 -0.54 -1.36 16 15 C -0.07 -0.73 9.68 -39.60 -0.38 -1.11 16 16 C -0.15 -1.35 10.03 -39.51 -0.40 -1.75 16 17 C 0.10 1.03 7.30 -39.42 -0.29 0.74 16 18 F -0.14 -1.45 17.27 2.25 0.04 -1.41 16 19 C -0.15 -1.53 9.81 -39.48 -0.39 -1.91 16 20 C -0.01 -0.11 6.31 -39.51 -0.25 -0.36 16 21 Cl -0.05 -0.60 27.15 -51.86 -1.41 -2.01 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.08 1.69 6.76 -51.93 -0.35 1.34 16 24 H 0.05 0.80 6.47 -51.93 -0.34 0.46 16 25 H -0.01 -0.29 7.18 -51.93 -0.37 -0.66 16 26 H 0.02 0.56 7.36 -51.93 -0.38 0.18 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.03 0.46 7.88 -51.93 -0.41 0.05 16 29 H 0.07 1.11 7.93 -51.93 -0.41 0.70 16 30 H 0.09 1.12 8.05 -51.93 -0.42 0.70 16 31 H 0.08 1.09 5.54 -51.93 -0.29 0.81 16 32 H 0.15 1.18 8.06 -52.49 -0.42 0.75 16 33 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 34 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 301.90 15.07 4.55 4.55 Total: -1.00 -30.23 301.90 -8.36 -38.59 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -4.21 Total: -4.03 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.27 Total: -13.74 kcal Atomic # 7 Polarization: -38.37 SS G_CDS: -0.39 Total: -38.76 kcal Atomic # 9 Polarization: -1.45 SS G_CDS: 0.04 Total: -1.41 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.41 Total: -2.01 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.23 -8.36 -38.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209109806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.651 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds