Wall clock time and date at job start Mon Mar 30 2020 01:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99727 * 2 1 4 4 C 1.50696 * 109.47000 * 293.95191 * 3 2 1 5 5 H 1.07999 * 120.00020 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00135 * 180.02562 * 4 3 2 7 7 N 1.31510 * 119.99897 * 179.97438 * 6 4 3 8 8 Si 1.86803 * 119.99614 * 0.02562 * 6 4 3 9 9 H 1.48497 * 109.47229 * 89.99948 * 8 6 4 10 10 H 1.48501 * 109.46621 * 210.00080 * 8 6 4 11 11 H 1.48492 * 109.47292 * 329.99312 * 8 6 4 12 12 C 1.46903 * 110.99907 * 123.94720 * 2 1 3 13 13 C 1.52997 * 109.46827 * 66.05023 * 12 2 1 14 14 C 1.50702 * 109.47100 * 179.97438 * 13 12 2 15 15 C 1.38250 * 119.98297 * 265.25498 * 14 13 12 16 16 C 1.38180 * 120.03849 * 180.29853 * 15 14 13 17 17 C 1.38490 * 120.00167 * 359.72524 * 16 15 14 18 18 F 1.35100 * 120.02139 * 180.02562 * 17 16 15 19 19 C 1.38416 * 119.96045 * 0.02562 * 17 16 15 20 20 C 1.38341 * 119.97819 * 85.00185 * 14 13 12 21 21 Cl 1.73599 * 120.00413 * 359.97438 * 20 14 13 22 22 H 1.08993 * 109.47553 * 296.04615 * 1 2 3 23 23 H 1.08997 * 109.47299 * 56.05279 * 1 2 3 24 24 H 1.09002 * 109.46651 * 176.04735 * 1 2 3 25 25 H 1.09003 * 109.46996 * 53.94880 * 3 2 1 26 26 H 1.08997 * 109.46833 * 173.95032 * 3 2 1 27 27 H 0.97008 * 119.99772 * 180.02562 * 7 6 4 28 28 H 1.08996 * 109.47444 * 306.05404 * 12 2 1 29 29 H 1.08998 * 109.47245 * 186.04846 * 12 2 1 30 30 H 1.09005 * 109.47281 * 60.00258 * 13 12 2 31 31 H 1.09004 * 109.47486 * 300.00068 * 13 12 2 32 32 H 1.07999 * 119.98219 * 0.02562 * 15 14 13 33 33 H 1.08004 * 119.99944 * 179.70122 * 16 15 14 34 34 H 1.08002 * 120.01901 * 180.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0276 3.3491 -1.5290 7 7 1.7151 3.9385 -2.6623 8 14 3.0019 4.2754 -0.2319 9 1 4.4540 4.0618 -0.4573 10 1 2.6946 5.7254 -0.3238 11 1 2.6314 3.7755 1.1163 12 6 1.9954 -0.7659 1.1377 13 6 1.6315 -2.2425 0.9705 14 6 2.1721 -3.0283 2.1373 15 6 3.4003 -3.6552 2.0384 16 6 3.8942 -4.3812 3.1053 17 6 3.1615 -4.4764 4.2766 18 9 3.6442 -5.1856 5.3202 19 6 1.9341 -3.8445 4.3775 20 6 1.4413 -3.1176 3.3085 21 17 -0.0976 -2.3240 3.4343 22 1 -0.3634 0.4512 0.9232 23 1 -0.3634 0.5739 -0.8525 24 1 -0.3633 -1.0253 -0.0708 25 1 1.5609 1.9274 0.8309 26 1 3.0796 1.3445 0.1083 27 1 1.9903 4.8545 -2.8246 28 1 1.5610 -0.3872 2.0628 29 1 3.0797 -0.6610 1.1758 30 1 2.0659 -2.6213 0.0453 31 1 0.5472 -2.3475 0.9324 32 1 3.9720 -3.5812 1.1252 33 1 4.8516 -4.8747 3.0257 34 1 1.3620 -3.9177 5.2906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209109806.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:56 Heat of formation + Delta-G solvation = -45.782600 kcal Electronic energy + Delta-G solvation = -17962.755682 eV Core-core repulsion = 14835.026434 eV Total energy + Delta-G solvation = -3127.729249 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.98687 -40.50254 -38.43841 -37.49122 -34.93091 -33.74318 -31.99426 -30.31140 -28.83876 -26.85457 -24.17593 -24.16812 -22.35181 -21.54327 -18.96336 -18.86525 -17.80628 -17.07136 -16.70925 -16.44718 -16.12894 -15.96732 -15.47527 -15.06355 -14.85848 -14.75169 -14.39862 -14.13407 -14.03635 -13.28855 -13.12877 -12.87231 -12.69808 -12.46752 -12.36685 -12.31841 -12.11141 -11.90588 -11.81109 -11.60028 -11.42538 -10.76936 -10.03445 -9.60409 -9.02325 -8.27072 -6.30123 -0.07932 0.03130 1.01319 1.35396 1.36783 1.47196 2.35194 2.36065 3.06037 3.14089 3.26041 3.64922 3.81499 3.92400 4.07579 4.21311 4.34039 4.44684 4.52244 4.66632 4.68020 4.83460 4.87542 4.94996 4.96358 5.03962 5.08050 5.13904 5.30172 5.39127 5.54554 5.69801 5.99824 6.35926 6.66111 6.76455 7.33542 8.89461 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.004125 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.763449 B = 6786.739141 C = 7139.943155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.171 3.829 4 C -0.515 4.515 5 H 0.040 0.960 6 C 0.009 3.991 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.254 1.254 12 C 0.062 3.938 13 C -0.073 4.073 14 C -0.083 4.083 15 C -0.071 4.071 16 C -0.139 4.139 17 C 0.094 3.906 18 F -0.139 7.139 19 C -0.149 4.149 20 C -0.019 4.019 21 Cl -0.061 7.061 22 H 0.014 0.986 23 H 0.047 0.953 24 H 0.080 0.920 25 H -0.016 1.016 26 H 0.030 0.970 27 H 0.267 0.733 28 H 0.025 0.975 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.165 0.835 33 H 0.166 0.834 34 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.757 -18.389 15.488 24.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.043 3.957 4 C -0.554 4.554 5 H 0.059 0.941 6 C -0.188 4.188 7 N -0.589 5.589 8 Si 0.768 3.232 9 H -0.187 1.187 10 H -0.208 1.208 11 H -0.178 1.178 12 C -0.066 4.066 13 C -0.110 4.110 14 C -0.084 4.084 15 C -0.089 4.089 16 C -0.157 4.157 17 C 0.075 3.925 18 F -0.118 7.118 19 C -0.169 4.169 20 C -0.046 4.046 21 Cl -0.032 7.032 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.098 0.902 25 H 0.002 0.998 26 H 0.048 0.952 27 H 0.076 0.924 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.183 0.817 33 H 0.184 0.816 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.802 -18.411 15.017 23.923 hybrid contribution -0.236 1.193 1.104 1.643 sum 2.566 -17.218 16.121 23.726 Atomic orbital electron populations 1.22207 0.87675 1.01350 0.99485 1.61850 1.08161 1.14582 1.42071 1.19951 0.95173 0.85941 0.94601 1.21272 1.34808 0.97516 1.01764 0.94124 1.25814 0.97038 0.98419 0.97563 1.70046 1.48655 1.13933 1.26233 0.85753 0.79638 0.77688 0.80106 1.18733 1.20805 1.17844 1.22071 1.00030 0.93214 0.91251 1.20581 1.01925 0.92614 0.95915 1.19934 0.95310 0.98975 0.94227 1.21215 0.93624 0.94289 0.99778 1.21529 1.01877 1.00908 0.91427 1.17598 0.93652 0.95646 0.85631 1.91512 1.87776 1.76146 1.56345 1.21051 0.96258 0.99486 1.00057 1.20639 0.89412 0.99134 0.95374 1.98393 1.28026 1.78766 1.97974 0.96732 0.93359 0.90176 0.99849 0.95208 0.92444 0.95631 0.90966 0.88828 0.90285 0.81709 0.81616 0.82826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.55 9.14 127.69 1.17 2.72 16 2 N -0.54 -21.87 4.75 -927.06 -4.41 -26.27 16 3 C 0.17 8.15 3.79 85.55 0.32 8.47 16 4 C -0.52 -29.74 9.01 25.60 0.23 -29.51 16 5 H 0.04 2.61 7.37 -2.91 -0.02 2.59 16 6 C 0.01 0.52 5.47 84.66 0.46 0.98 16 7 N -0.95 -59.20 13.96 21.45 0.30 -58.90 16 8 Si 0.94 43.98 27.47 68.60 1.88 45.86 16 9 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.25 -11.19 6.54 99.48 0.65 -10.54 16 12 C 0.06 1.95 4.94 86.30 0.43 2.37 16 13 C -0.07 -1.78 4.78 29.85 0.14 -1.64 16 14 C -0.08 -1.73 5.14 -19.84 -0.10 -1.83 16 15 C -0.07 -1.17 9.68 22.26 0.22 -0.96 16 16 C -0.14 -2.10 10.03 22.32 0.22 -1.88 16 17 C 0.09 1.70 7.30 22.37 0.16 1.86 16 18 F -0.14 -2.64 17.27 44.97 0.78 -1.86 16 19 C -0.15 -2.81 9.81 22.34 0.22 -2.59 16 20 C -0.02 -0.40 6.31 22.32 0.14 -0.26 16 21 Cl -0.06 -1.37 27.15 -2.72 -0.07 -1.45 16 22 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 23 H 0.05 2.11 6.76 -2.39 -0.02 2.09 16 24 H 0.08 2.50 6.47 -2.39 -0.02 2.48 16 25 H -0.02 -0.78 7.18 -2.39 -0.02 -0.80 16 26 H 0.03 1.39 7.36 -2.39 -0.02 1.37 16 27 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 28 H 0.03 0.81 7.88 -2.39 -0.02 0.79 16 29 H 0.07 2.19 7.93 -2.39 -0.02 2.17 16 30 H 0.09 2.17 8.05 -2.38 -0.02 2.15 16 31 H 0.08 1.96 5.54 -2.39 -0.01 1.95 16 32 H 0.17 2.06 8.06 -2.91 -0.02 2.03 16 33 H 0.17 1.65 8.06 -2.91 -0.02 1.62 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -65.53 301.90 3.14 -62.39 By element: Atomic # 1 Polarization: 1.44 SS G_CDS: 1.05 Total: 2.49 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: 3.61 Total: -22.25 kcal Atomic # 7 Polarization: -81.07 SS G_CDS: -4.11 Total: -85.18 kcal Atomic # 9 Polarization: -2.64 SS G_CDS: 0.78 Total: -1.86 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Atomic # 17 Polarization: -1.37 SS G_CDS: -0.07 Total: -1.45 kcal Total: -65.53 3.14 -62.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209109806.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.604 kcal (2) G-P(sol) polarization free energy of solvation -65.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds