Wall clock time and date at job start Mon Mar 30 2020 00:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 117.00225 * 2 1 4 4 C 1.38912 * 119.68725 * 180.02562 * 3 2 1 5 5 C 1.38387 * 119.11216 * 179.97438 * 4 3 2 6 6 C 1.38831 * 118.48089 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.35090 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46878 * 89.99819 * 7 6 5 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47444 * 29.99805 * 9 8 7 11 11 C 1.50704 * 109.47338 * 150.00083 * 9 8 7 12 12 H 1.08000 * 119.99136 * 0.02562 * 11 9 8 13 13 C 1.37871 * 120.00314 * 179.97438 * 11 9 8 14 14 N 1.31513 * 119.99948 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00045 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47248 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47402 * 120.00159 * 15 13 11 18 18 H 1.48505 * 109.47032 * 240.00181 * 15 13 11 19 19 C 1.53008 * 109.47438 * 270.00038 * 9 8 7 20 20 Cl 1.80300 * 109.46854 * 65.00099 * 19 9 8 21 21 C 1.38044 * 119.29170 * 0.24910 * 6 5 4 22 22 N 1.31961 * 120.83206 * 359.45437 * 21 6 5 23 23 H 1.09000 * 109.47246 * 60.00170 * 1 2 3 24 24 H 1.09005 * 109.46889 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46976 * 299.99742 * 1 2 3 26 26 H 1.07997 * 120.44736 * 0.02562 * 4 3 2 27 27 H 1.07994 * 120.75634 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47060 * 209.99949 * 7 6 5 29 29 H 1.09001 * 109.47380 * 330.00037 * 7 6 5 30 30 H 0.97004 * 119.99626 * 179.97438 * 14 13 11 31 31 H 1.08994 * 109.47264 * 185.00576 * 19 9 8 32 32 H 1.09000 * 109.46477 * 305.00136 * 19 9 8 33 33 H 1.07996 * 119.57883 * 179.72770 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2503 3.6492 -0.0005 7 6 3.8767 5.0199 -0.0005 8 8 4.0741 5.4533 -1.3478 9 6 4.6655 6.7493 -1.4606 10 1 5.3127 6.9293 -0.6022 11 6 5.4791 6.8217 -2.7271 12 1 5.5381 5.9640 -3.3806 13 6 6.1471 7.9833 -3.0518 14 7 6.0748 9.0279 -2.2562 15 14 7.1549 8.0732 -4.6220 16 1 7.0743 6.7742 -5.3371 17 1 6.6201 9.1509 -5.4926 18 1 8.5713 8.3663 -4.2851 19 6 3.5644 7.8109 -1.5004 20 17 2.6846 7.8234 0.0733 21 6 1.8770 3.5097 0.0058 22 7 1.3186 2.3140 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0228 0.3696 -0.0014 27 1 5.1253 2.5947 -0.0011 28 1 3.2184 5.7201 0.5138 29 1 4.8374 4.9804 0.5129 30 1 6.5451 9.8449 -2.4845 31 1 4.0098 8.7901 -1.6755 32 1 2.8663 7.5801 -2.3051 33 1 1.2517 4.3902 0.0107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223202113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:02 Heat of formation + Delta-G solvation = -63.869648 kcal Electronic energy + Delta-G solvation = -18165.887779 eV Core-core repulsion = 15025.001428 eV Total energy + Delta-G solvation = -3140.886351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.49310 -38.09982 -36.98226 -34.77075 -33.43198 -32.41638 -31.27857 -29.00534 -27.47312 -25.41091 -25.10596 -23.30495 -21.66997 -20.95525 -18.33128 -17.01083 -16.83064 -16.02474 -15.79809 -15.20105 -14.64466 -14.49800 -14.35101 -13.94872 -13.44975 -13.28589 -12.94726 -12.56892 -12.14437 -12.01824 -11.79894 -11.40856 -11.22615 -11.06841 -10.93745 -10.80100 -10.42066 -9.97254 -9.73924 -9.47811 -9.44091 -9.32354 -8.65014 -8.32300 -8.11895 -6.35036 -4.41243 1.28020 1.40826 3.11976 3.14754 3.24465 3.30045 3.43355 3.85247 4.19853 4.43439 4.83727 5.00197 5.11882 5.14051 5.20262 5.25544 5.30540 5.51542 5.61626 5.70423 6.03340 6.11626 6.17052 6.34542 6.43641 6.55603 6.62426 6.86922 7.26713 7.28321 7.61548 7.91510 7.95695 8.31881 8.76953 9.26916 10.72041 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.004549 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.082531 B = 6154.312398 C = 6947.006112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.309 3.691 4 C -0.193 4.193 5 C -0.025 4.025 6 C -0.156 4.156 7 C 0.094 3.906 8 O -0.381 6.381 9 C 0.213 3.787 10 H 0.033 0.967 11 C -0.514 4.514 12 H 0.074 0.926 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.911 3.089 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.281 1.281 19 C -0.031 4.031 20 Cl -0.252 7.252 21 C 0.156 3.844 22 N -0.543 5.543 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.057 0.943 26 H 0.139 0.861 27 H 0.143 0.857 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.269 0.731 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.375 -10.591 4.956 13.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.220 6.220 3 C 0.131 3.869 4 C -0.214 4.214 5 C -0.050 4.050 6 C -0.159 4.159 7 C 0.016 3.984 8 O -0.301 6.301 9 C 0.157 3.843 10 H 0.051 0.949 11 C -0.552 4.552 12 H 0.092 0.908 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.738 3.262 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.206 1.206 19 C -0.093 4.093 20 Cl -0.226 7.226 21 C 0.001 3.999 22 N -0.266 5.266 23 H 0.076 0.924 24 H 0.110 0.890 25 H 0.076 0.924 26 H 0.157 0.843 27 H 0.160 0.840 28 H 0.091 0.909 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.234 -10.862 4.915 13.945 hybrid contribution 1.158 0.569 -0.562 1.407 sum -6.076 -10.293 4.353 12.720 Atomic orbital electron populations 1.22804 0.77605 1.02514 1.02468 1.86205 1.22656 1.24894 1.88234 1.19831 0.89444 0.84647 0.93021 1.21008 0.91882 0.99384 1.09110 1.21414 1.00812 0.90631 0.92163 1.20743 0.94648 0.96387 1.04104 1.21447 0.98932 0.90650 0.87322 1.87932 1.82863 1.36474 1.22817 1.20027 0.88587 0.77284 0.98438 0.94948 1.21124 1.28133 0.99500 1.06416 0.90824 1.24995 0.96290 0.95175 0.97722 1.69817 1.42790 1.03354 1.36964 0.86210 0.79518 0.78416 0.82056 1.19375 1.20659 1.20635 1.25918 0.95061 1.07514 0.80842 1.98597 1.81835 1.98694 1.43511 1.22334 0.92486 0.93307 0.91788 1.67320 1.40840 0.98773 1.19673 0.92360 0.88966 0.92444 0.84342 0.83956 0.90887 0.93511 0.92113 0.85408 0.90952 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 10.38 101.05 1.05 1.48 16 2 O -0.31 -4.21 10.48 -18.74 -0.20 -4.41 16 3 C 0.31 4.64 7.49 -17.12 -0.13 4.51 16 4 C -0.19 -2.67 10.04 -39.28 -0.39 -3.07 16 5 C -0.02 -0.36 9.85 -39.31 -0.39 -0.75 16 6 C -0.16 -2.57 5.53 -104.47 -0.58 -3.15 16 7 C 0.09 1.73 5.69 36.01 0.20 1.93 16 8 O -0.38 -8.55 9.94 -35.23 -0.35 -8.90 16 9 C 0.21 5.15 2.38 -27.88 -0.07 5.09 16 10 H 0.03 0.84 7.79 -51.93 -0.40 0.43 16 11 C -0.51 -13.48 8.89 -34.44 -0.31 -13.78 16 12 H 0.07 1.97 7.81 -52.49 -0.41 1.56 16 13 C 0.06 1.56 5.29 -17.82 -0.09 1.46 16 14 N -0.89 -23.42 11.29 55.43 0.63 -22.80 16 15 Si 0.91 20.07 29.54 -169.99 -5.02 15.05 16 16 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.03 -0.70 6.17 37.16 0.23 -0.47 16 20 Cl -0.25 -4.98 26.09 -51.86 -1.35 -6.33 16 21 C 0.16 2.49 10.85 -17.57 -0.19 2.30 16 22 N -0.54 -8.56 9.22 -13.33 -0.12 -8.69 16 23 H 0.06 0.62 8.10 -51.93 -0.42 0.20 16 24 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.14 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.14 1.83 8.06 -52.49 -0.42 1.40 16 28 H 0.07 1.33 5.04 -51.93 -0.26 1.07 16 29 H 0.05 0.83 8.04 -51.93 -0.42 0.41 16 30 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 31 H 0.13 3.14 5.95 -51.93 -0.31 2.83 16 32 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.16 2.35 8.06 -52.49 -0.42 1.93 16 LS Contribution 300.03 15.07 4.52 4.52 Total: -1.00 -27.60 300.03 -6.45 -34.05 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -3.89 Total: 1.94 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -0.66 Total: -4.45 kcal Atomic # 7 Polarization: -31.99 SS G_CDS: 0.50 Total: -31.48 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.55 Total: -13.30 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -4.98 SS G_CDS: -1.35 Total: -6.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.60 -6.45 -34.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223202113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.820 kcal (2) G-P(sol) polarization free energy of solvation -27.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds