Wall clock time and date at job start Mon Mar 30 2020 00:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35678 * 117.00225 * 2 1 4 4 C 1.38912 * 119.68725 * 180.02562 * 3 2 1 5 5 C 1.38387 * 119.11216 * 179.97438 * 4 3 2 6 6 C 1.38831 * 118.48089 * 0.02562 * 5 4 3 7 7 C 1.50701 * 120.35090 * 179.97438 * 6 5 4 8 8 O 1.42903 * 109.46878 * 89.99819 * 7 6 5 9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6 10 10 H 1.08999 * 109.47444 * 29.99805 * 9 8 7 11 11 C 1.50704 * 109.47338 * 150.00083 * 9 8 7 12 12 H 1.08000 * 119.99136 * 0.02562 * 11 9 8 13 13 C 1.37871 * 120.00314 * 179.97438 * 11 9 8 14 14 N 1.31513 * 119.99948 * 0.02562 * 13 11 9 15 15 Si 1.86797 * 120.00045 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47248 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47402 * 120.00159 * 15 13 11 18 18 H 1.48505 * 109.47032 * 240.00181 * 15 13 11 19 19 C 1.53008 * 109.47438 * 270.00038 * 9 8 7 20 20 Cl 1.80300 * 109.46854 * 65.00099 * 19 9 8 21 21 C 1.38044 * 119.29170 * 0.24910 * 6 5 4 22 22 N 1.31961 * 120.83206 * 359.45437 * 21 6 5 23 23 H 1.09000 * 109.47246 * 60.00170 * 1 2 3 24 24 H 1.09005 * 109.46889 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46976 * 299.99742 * 1 2 3 26 26 H 1.07997 * 120.44736 * 0.02562 * 4 3 2 27 27 H 1.07994 * 120.75634 * 179.97438 * 5 4 3 28 28 H 1.09002 * 109.47060 * 209.99949 * 7 6 5 29 29 H 1.09001 * 109.47380 * 330.00037 * 7 6 5 30 30 H 0.97004 * 119.99626 * 179.97438 * 14 13 11 31 31 H 1.08994 * 109.47264 * 185.00576 * 19 9 8 32 32 H 1.09000 * 109.46477 * 305.00136 * 19 9 8 33 33 H 1.07996 * 119.57883 * 179.72770 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4326 1.2739 -0.0005 5 6 4.0485 2.5132 -0.0011 6 6 3.2503 3.6492 -0.0005 7 6 3.8767 5.0199 -0.0005 8 8 4.0741 5.4533 -1.3478 9 6 4.6655 6.7493 -1.4606 10 1 5.3127 6.9293 -0.6022 11 6 5.4791 6.8217 -2.7271 12 1 5.5381 5.9640 -3.3806 13 6 6.1471 7.9833 -3.0518 14 7 6.0748 9.0279 -2.2562 15 14 7.1549 8.0732 -4.6220 16 1 7.0743 6.7742 -5.3371 17 1 6.6201 9.1509 -5.4926 18 1 8.5713 8.3663 -4.2851 19 6 3.5644 7.8109 -1.5004 20 17 2.6846 7.8234 0.0733 21 6 1.8770 3.5097 0.0058 22 7 1.3186 2.3140 0.0005 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 4.0228 0.3696 -0.0014 27 1 5.1253 2.5947 -0.0011 28 1 3.2184 5.7201 0.5138 29 1 4.8374 4.9804 0.5129 30 1 6.5451 9.8449 -2.4845 31 1 4.0098 8.7901 -1.6755 32 1 2.8663 7.5801 -2.3051 33 1 1.2517 4.3902 0.0107 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223202113.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:01 Heat of formation + Delta-G solvation = -81.120969 kcal Electronic energy + Delta-G solvation = -18166.635853 eV Core-core repulsion = 15025.001428 eV Total energy + Delta-G solvation = -3141.634425 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.63247 -39.36666 -38.51073 -36.47856 -35.27833 -33.68471 -32.56906 -30.75959 -28.46010 -27.21893 -26.57024 -24.43469 -22.97559 -22.75676 -19.39788 -18.73735 -18.17079 -17.62477 -16.97774 -16.74574 -16.21125 -16.01883 -15.50318 -15.18125 -15.04683 -14.54562 -14.18741 -14.05774 -13.87873 -13.47166 -13.11193 -12.92361 -12.79916 -12.65764 -12.49280 -12.19876 -12.12244 -11.62418 -11.27081 -11.18241 -10.88573 -10.65845 -10.56562 -9.87380 -9.46413 -8.30135 -6.44383 0.09410 0.23989 1.40671 1.45557 1.57663 1.65099 2.11829 2.35242 2.65086 3.02376 3.29054 3.39850 3.94894 3.99197 4.03160 4.24925 4.43865 4.46347 4.47589 4.51399 4.58213 4.72822 4.75970 4.82592 4.93992 4.99323 5.34552 5.38584 5.42984 5.61322 5.98757 6.20065 6.48385 6.77982 6.83511 7.28673 8.76358 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023904 B = 0.004549 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.082531 B = 6154.312398 C = 6947.006112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.316 6.316 3 C 0.301 3.699 4 C -0.189 4.189 5 C -0.025 4.025 6 C -0.175 4.175 7 C 0.096 3.904 8 O -0.395 6.395 9 C 0.220 3.780 10 H 0.011 0.989 11 C -0.540 4.540 12 H 0.061 0.939 13 C 0.024 3.976 14 N -0.911 5.911 15 Si 0.972 3.028 16 H -0.270 1.270 17 H -0.274 1.274 18 H -0.275 1.275 19 C -0.023 4.023 20 Cl -0.226 7.226 21 C 0.150 3.850 22 N -0.553 5.553 23 H 0.052 0.948 24 H 0.126 0.874 25 H 0.056 0.944 26 H 0.167 0.833 27 H 0.159 0.841 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.273 0.727 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.421 -11.699 4.807 14.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.122 3.878 4 C -0.209 4.209 5 C -0.051 4.051 6 C -0.177 4.177 7 C 0.019 3.981 8 O -0.316 6.316 9 C 0.163 3.837 10 H 0.029 0.971 11 C -0.578 4.578 12 H 0.080 0.920 13 C -0.177 4.177 14 N -0.549 5.549 15 Si 0.796 3.204 16 H -0.194 1.194 17 H -0.199 1.199 18 H -0.200 1.200 19 C -0.086 4.086 20 Cl -0.200 7.200 21 C -0.005 4.005 22 N -0.277 5.277 23 H 0.071 0.929 24 H 0.144 0.856 25 H 0.075 0.925 26 H 0.184 0.816 27 H 0.176 0.824 28 H 0.091 0.909 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.128 0.872 32 H 0.091 0.909 33 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.297 -11.981 4.783 14.822 hybrid contribution 1.085 0.818 -0.422 1.422 sum -6.212 -11.164 4.362 13.500 Atomic orbital electron populations 1.23058 0.75971 1.04691 1.02126 1.86212 1.24292 1.23995 1.87876 1.20170 0.90172 0.84928 0.92486 1.21294 0.91750 1.00038 1.07789 1.21638 1.01610 0.90424 0.91396 1.20637 0.95092 0.95819 1.06177 1.21500 0.99282 0.91886 0.85450 1.87895 1.82660 1.35598 1.25423 1.19775 0.88655 0.78511 0.96803 0.97126 1.21327 1.29595 0.99589 1.07274 0.92035 1.25700 0.96935 0.94635 1.00395 1.69902 1.43118 1.03711 1.38216 0.85282 0.78177 0.78330 0.78575 1.19420 1.19937 1.20039 1.25512 0.94913 1.05898 0.82265 1.98592 1.81094 1.98680 1.41652 1.22410 0.92462 0.93742 0.91898 1.67332 1.41184 0.98919 1.20250 0.92938 0.85593 0.92530 0.81593 0.82365 0.90891 0.93203 0.91758 0.87205 0.90893 0.81831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.38 113.37 1.18 1.85 16 2 O -0.32 -7.89 10.48 -89.95 -0.94 -8.83 16 3 C 0.30 8.56 7.49 84.79 0.63 9.20 16 4 C -0.19 -4.83 10.04 22.47 0.23 -4.60 16 5 C -0.03 -0.71 9.85 22.45 0.22 -0.49 16 6 C -0.17 -5.65 5.53 -19.77 -0.11 -5.76 16 7 C 0.10 3.52 5.69 71.24 0.41 3.93 16 8 O -0.40 -17.90 9.94 -148.98 -1.48 -19.38 16 9 C 0.22 10.77 2.38 29.85 0.07 10.85 16 10 H 0.01 0.58 7.79 -2.39 -0.02 0.56 16 11 C -0.54 -28.68 8.89 25.60 0.23 -28.45 16 12 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 13 C 0.02 1.23 5.29 84.65 0.45 1.68 16 14 N -0.91 -48.00 11.29 21.44 0.24 -47.76 16 15 Si 0.97 40.86 29.54 68.60 2.03 42.89 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 19 C -0.02 -1.05 6.17 71.98 0.44 -0.60 16 20 Cl -0.23 -8.84 26.09 -2.72 -0.07 -8.91 16 21 C 0.15 4.70 10.85 84.63 0.92 5.62 16 22 N -0.55 -16.94 9.22 -308.96 -2.85 -19.78 16 23 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16 24 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 25 H 0.06 1.06 8.10 -2.39 -0.02 1.05 16 26 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16 28 H 0.07 2.65 5.04 -2.39 -0.01 2.63 16 29 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16 30 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16 31 H 0.11 5.46 5.95 -2.39 -0.01 5.44 16 32 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 33 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16 Total: -1.00 -57.83 300.03 2.71 -55.13 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 1.12 Total: 13.44 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: 4.66 Total: -6.79 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: -2.61 Total: -67.55 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -2.42 Total: -28.22 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Atomic # 17 Polarization: -8.84 SS G_CDS: -0.07 Total: -8.91 kcal Total: -57.83 2.71 -55.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223202113.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.993 kcal (2) G-P(sol) polarization free energy of solvation -57.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds