Wall clock time and date at job start Mon Mar 30 2020 00:51:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42895 * 1
3 3 C 1.35678 * 117.00225 * 2 1
4 4 C 1.38912 * 119.68725 * 180.02562 * 3 2 1
5 5 C 1.38387 * 119.11216 * 179.97438 * 4 3 2
6 6 C 1.38831 * 118.48089 * 0.02562 * 5 4 3
7 7 C 1.50701 * 120.35090 * 179.97438 * 6 5 4
8 8 O 1.42903 * 109.46878 * 89.99819 * 7 6 5
9 9 C 1.42899 * 113.99629 * 179.97438 * 8 7 6
10 10 H 1.08999 * 109.47444 * 29.99805 * 9 8 7
11 11 C 1.50704 * 109.47338 * 150.00083 * 9 8 7
12 12 H 1.08000 * 119.99136 * 0.02562 * 11 9 8
13 13 C 1.37871 * 120.00314 * 179.97438 * 11 9 8
14 14 N 1.31513 * 119.99948 * 0.02562 * 13 11 9
15 15 Si 1.86797 * 120.00045 * 180.02562 * 13 11 9
16 16 H 1.48502 * 109.47248 * 0.02562 * 15 13 11
17 17 H 1.48501 * 109.47402 * 120.00159 * 15 13 11
18 18 H 1.48505 * 109.47032 * 240.00181 * 15 13 11
19 19 C 1.53008 * 109.47438 * 270.00038 * 9 8 7
20 20 Cl 1.80300 * 109.46854 * 65.00099 * 19 9 8
21 21 C 1.38044 * 119.29170 * 0.24910 * 6 5 4
22 22 N 1.31961 * 120.83206 * 359.45437 * 21 6 5
23 23 H 1.09000 * 109.47246 * 60.00170 * 1 2 3
24 24 H 1.09005 * 109.46889 * 179.97438 * 1 2 3
25 25 H 1.09000 * 109.46976 * 299.99742 * 1 2 3
26 26 H 1.07997 * 120.44736 * 0.02562 * 4 3 2
27 27 H 1.07994 * 120.75634 * 179.97438 * 5 4 3
28 28 H 1.09002 * 109.47060 * 209.99949 * 7 6 5
29 29 H 1.09001 * 109.47380 * 330.00037 * 7 6 5
30 30 H 0.97004 * 119.99626 * 179.97438 * 14 13 11
31 31 H 1.08994 * 109.47264 * 185.00576 * 19 9 8
32 32 H 1.09000 * 109.46477 * 305.00136 * 19 9 8
33 33 H 1.07996 * 119.57883 * 179.72770 * 21 6 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4289 0.0000 0.0000
3 6 2.0450 1.2089 0.0000
4 6 3.4326 1.2739 -0.0005
5 6 4.0485 2.5132 -0.0011
6 6 3.2503 3.6492 -0.0005
7 6 3.8767 5.0199 -0.0005
8 8 4.0741 5.4533 -1.3478
9 6 4.6655 6.7493 -1.4606
10 1 5.3127 6.9293 -0.6022
11 6 5.4791 6.8217 -2.7271
12 1 5.5381 5.9640 -3.3806
13 6 6.1471 7.9833 -3.0518
14 7 6.0748 9.0279 -2.2562
15 14 7.1549 8.0732 -4.6220
16 1 7.0743 6.7742 -5.3371
17 1 6.6201 9.1509 -5.4926
18 1 8.5713 8.3663 -4.2851
19 6 3.5644 7.8109 -1.5004
20 17 2.6846 7.8234 0.0733
21 6 1.8770 3.5097 0.0058
22 7 1.3186 2.3140 0.0005
23 1 -0.3634 0.5138 -0.8900
24 1 -0.3633 -1.0277 -0.0005
25 1 -0.3633 0.5138 0.8900
26 1 4.0228 0.3696 -0.0014
27 1 5.1253 2.5947 -0.0011
28 1 3.2184 5.7201 0.5138
29 1 4.8374 4.9804 0.5129
30 1 6.5451 9.8449 -2.4845
31 1 4.0098 8.7901 -1.6755
32 1 2.8663 7.5801 -2.3051
33 1 1.2517 4.3902 0.0107
RHF calculation, no. of doubly occupied orbitals= 47
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001223202113.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:51:01
Heat of formation + Delta-G solvation = -81.120969 kcal
Electronic energy + Delta-G solvation = -18166.635853 eV
Core-core repulsion = 15025.001428 eV
Total energy + Delta-G solvation = -3141.634425 eV
No. of doubly occupied orbitals = 47
Molecular weight
(most abundant/longest-lived isotopes) = 271.076 amu
Computer time = 0.31 seconds
Orbital eigenvalues (eV)
-41.63247 -39.36666 -38.51073 -36.47856 -35.27833 -33.68471 -32.56906 -30.75959
-28.46010 -27.21893 -26.57024 -24.43469 -22.97559 -22.75676 -19.39788 -18.73735
-18.17079 -17.62477 -16.97774 -16.74574 -16.21125 -16.01883 -15.50318 -15.18125
-15.04683 -14.54562 -14.18741 -14.05774 -13.87873 -13.47166 -13.11193 -12.92361
-12.79916 -12.65764 -12.49280 -12.19876 -12.12244 -11.62418 -11.27081 -11.18241
-10.88573 -10.65845 -10.56562 -9.87380 -9.46413 -8.30135 -6.44383 0.09410
0.23989 1.40671 1.45557 1.57663 1.65099 2.11829 2.35242 2.65086
3.02376 3.29054 3.39850 3.94894 3.99197 4.03160 4.24925 4.43865
4.46347 4.47589 4.51399 4.58213 4.72822 4.75970 4.82592 4.93992
4.99323 5.34552 5.38584 5.42984 5.61322 5.98757 6.20065 6.48385
6.77982 6.83511 7.28673 8.76358
Molecular weight = 271.08amu
Principal moments of inertia in cm(-1)
A = 0.023904 B = 0.004549 C = 0.004030
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1171.082531 B = 6154.312398 C = 6947.006112
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.036 3.964
2 O -0.316 6.316
3 C 0.301 3.699
4 C -0.189 4.189
5 C -0.025 4.025
6 C -0.175 4.175
7 C 0.096 3.904
8 O -0.395 6.395
9 C 0.220 3.780
10 H 0.011 0.989
11 C -0.540 4.540
12 H 0.061 0.939
13 C 0.024 3.976
14 N -0.911 5.911
15 Si 0.972 3.028
16 H -0.270 1.270
17 H -0.274 1.274
18 H -0.275 1.275
19 C -0.023 4.023
20 Cl -0.226 7.226
21 C 0.150 3.850
22 N -0.553 5.553
23 H 0.052 0.948
24 H 0.126 0.874
25 H 0.056 0.944
26 H 0.167 0.833
27 H 0.159 0.841
28 H 0.073 0.927
29 H 0.050 0.950
30 H 0.273 0.727
31 H 0.110 0.890
32 H 0.072 0.928
33 H 0.165 0.835
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.421 -11.699 4.807 14.185
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.058 4.058
2 O -0.224 6.224
3 C 0.122 3.878
4 C -0.209 4.209
5 C -0.051 4.051
6 C -0.177 4.177
7 C 0.019 3.981
8 O -0.316 6.316
9 C 0.163 3.837
10 H 0.029 0.971
11 C -0.578 4.578
12 H 0.080 0.920
13 C -0.177 4.177
14 N -0.549 5.549
15 Si 0.796 3.204
16 H -0.194 1.194
17 H -0.199 1.199
18 H -0.200 1.200
19 C -0.086 4.086
20 Cl -0.200 7.200
21 C -0.005 4.005
22 N -0.277 5.277
23 H 0.071 0.929
24 H 0.144 0.856
25 H 0.075 0.925
26 H 0.184 0.816
27 H 0.176 0.824
28 H 0.091 0.909
29 H 0.068 0.932
30 H 0.082 0.918
31 H 0.128 0.872
32 H 0.091 0.909
33 H 0.182 0.818
Dipole moment (debyes) X Y Z Total
from point charges -7.297 -11.981 4.783 14.822
hybrid contribution 1.085 0.818 -0.422 1.422
sum -6.212 -11.164 4.362 13.500
Atomic orbital electron populations
1.23058 0.75971 1.04691 1.02126 1.86212 1.24292 1.23995 1.87876
1.20170 0.90172 0.84928 0.92486 1.21294 0.91750 1.00038 1.07789
1.21638 1.01610 0.90424 0.91396 1.20637 0.95092 0.95819 1.06177
1.21500 0.99282 0.91886 0.85450 1.87895 1.82660 1.35598 1.25423
1.19775 0.88655 0.78511 0.96803 0.97126 1.21327 1.29595 0.99589
1.07274 0.92035 1.25700 0.96935 0.94635 1.00395 1.69902 1.43118
1.03711 1.38216 0.85282 0.78177 0.78330 0.78575 1.19420 1.19937
1.20039 1.25512 0.94913 1.05898 0.82265 1.98592 1.81094 1.98680
1.41652 1.22410 0.92462 0.93742 0.91898 1.67332 1.41184 0.98919
1.20250 0.92938 0.85593 0.92530 0.81593 0.82365 0.90891 0.93203
0.91758 0.87205 0.90893 0.81831
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.67 10.38 113.37 1.18 1.85 16
2 O -0.32 -7.89 10.48 -89.95 -0.94 -8.83 16
3 C 0.30 8.56 7.49 84.79 0.63 9.20 16
4 C -0.19 -4.83 10.04 22.47 0.23 -4.60 16
5 C -0.03 -0.71 9.85 22.45 0.22 -0.49 16
6 C -0.17 -5.65 5.53 -19.77 -0.11 -5.76 16
7 C 0.10 3.52 5.69 71.24 0.41 3.93 16
8 O -0.40 -17.90 9.94 -148.98 -1.48 -19.38 16
9 C 0.22 10.77 2.38 29.85 0.07 10.85 16
10 H 0.01 0.58 7.79 -2.39 -0.02 0.56 16
11 C -0.54 -28.68 8.89 25.60 0.23 -28.45 16
12 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16
13 C 0.02 1.23 5.29 84.65 0.45 1.68 16
14 N -0.91 -48.00 11.29 21.44 0.24 -47.76 16
15 Si 0.97 40.86 29.54 68.60 2.03 42.89 16
16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16
17 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16
18 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16
19 C -0.02 -1.05 6.17 71.98 0.44 -0.60 16
20 Cl -0.23 -8.84 26.09 -2.72 -0.07 -8.91 16
21 C 0.15 4.70 10.85 84.63 0.92 5.62 16
22 N -0.55 -16.94 9.22 -308.96 -2.85 -19.78 16
23 H 0.05 1.04 8.10 -2.39 -0.02 1.02 16
24 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16
25 H 0.06 1.06 8.10 -2.39 -0.02 1.05 16
26 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16
27 H 0.16 3.81 8.06 -2.91 -0.02 3.79 16
28 H 0.07 2.65 5.04 -2.39 -0.01 2.63 16
29 H 0.05 1.78 8.04 -2.39 -0.02 1.76 16
30 H 0.27 13.52 8.31 -92.71 -0.77 12.75 16
31 H 0.11 5.46 5.95 -2.39 -0.01 5.44 16
32 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16
33 H 0.16 4.80 8.06 -2.91 -0.02 4.78 16
Total: -1.00 -57.83 300.03 2.71 -55.13
By element:
Atomic # 1 Polarization: 12.32 SS G_CDS: 1.12 Total: 13.44 kcal
Atomic # 6 Polarization: -11.45 SS G_CDS: 4.66 Total: -6.79 kcal
Atomic # 7 Polarization: -64.94 SS G_CDS: -2.61 Total: -67.55 kcal
Atomic # 8 Polarization: -25.79 SS G_CDS: -2.42 Total: -28.22 kcal
Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal
Atomic # 17 Polarization: -8.84 SS G_CDS: -0.07 Total: -8.91 kcal
Total: -57.83 2.71 -55.13 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001223202113.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.993 kcal
(2) G-P(sol) polarization free energy of solvation -57.835 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.827 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.706 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.128 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.121 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.31 seconds