Wall clock time and date at job start Mon Mar 30 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35918 * 116.99793 * 2 1 4 4 C 1.39133 * 120.47403 * 0.20640 * 3 2 1 5 5 C 1.38538 * 118.37537 * 180.23828 * 4 3 2 6 6 C 1.38250 * 119.22004 * 359.53705 * 5 4 3 7 7 N 1.31849 * 120.88785 * 0.24657 * 6 5 4 8 8 C 1.31841 * 121.77895 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.65818 * 180.02562 * 8 7 6 10 10 O 1.42907 * 109.47356 * 89.99751 * 9 8 7 11 11 C 1.42903 * 113.99789 * 179.97438 * 10 9 8 12 12 H 1.08996 * 109.47322 * 30.00112 * 11 10 9 13 13 C 1.50703 * 109.46442 * 149.99712 * 11 10 9 14 14 H 1.07995 * 120.00644 * 5.45962 * 13 11 10 15 15 C 1.37875 * 119.99576 * 185.45125 * 13 11 10 16 16 N 1.31515 * 120.00262 * 9.49304 * 15 13 11 17 17 Si 1.86798 * 119.99931 * 189.49386 * 15 13 11 18 18 H 1.48499 * 109.47710 * 84.99428 * 17 15 13 19 19 H 1.48504 * 109.47507 * 204.99699 * 17 15 13 20 20 H 1.48504 * 109.47412 * 324.99259 * 17 15 13 21 21 C 1.52999 * 109.47040 * 269.99445 * 11 10 9 22 22 Cl 1.80297 * 109.46739 * 66.36498 * 21 11 10 23 23 H 1.08995 * 109.47315 * 300.00446 * 1 2 3 24 24 H 1.09004 * 109.46876 * 60.00355 * 1 2 3 25 25 H 1.09004 * 109.47012 * 180.02562 * 1 2 3 26 26 H 1.08007 * 120.81430 * 0.02562 * 4 3 2 27 27 H 1.08003 * 120.39038 * 179.80664 * 5 4 3 28 28 H 1.07995 * 119.55572 * 180.22365 * 6 5 4 29 29 H 1.09007 * 109.47246 * 209.99447 * 9 8 7 30 30 H 1.09003 * 109.47097 * 329.99443 * 9 8 7 31 31 H 0.96998 * 120.00268 * 179.97438 * 16 15 13 32 32 H 1.08995 * 109.46691 * 186.35844 * 21 11 10 33 33 H 1.08988 * 109.47221 * 306.36211 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2979 2.3841 0.0043 5 6 1.9715 3.5947 -0.0009 6 6 3.3540 3.5977 -0.0005 7 7 4.0334 2.4677 0.0000 8 6 3.4306 1.2952 -0.0004 9 6 4.2543 0.0332 0.0007 10 8 4.5132 -0.3654 1.3484 11 6 5.2912 -1.5587 1.4623 12 1 5.9587 -1.6405 0.6044 13 6 6.1056 -1.5082 2.7293 14 1 5.9712 -0.6938 3.4257 15 6 7.0223 -2.5020 2.9996 16 7 7.3226 -3.3886 2.0758 17 14 7.8377 -2.5892 4.6779 18 1 6.9626 -3.3381 5.6152 19 1 9.1444 -3.2846 4.5580 20 1 8.0546 -1.2141 5.1950 21 6 4.3606 -2.7724 1.5021 22 17 3.5235 -2.9401 -0.0859 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3633 -1.0277 0.0005 26 1 0.2183 2.3518 0.0081 27 1 1.4232 4.5251 -0.0010 28 1 3.8847 4.5383 -0.0009 29 1 3.7081 -0.7577 -0.5135 30 1 5.1987 0.2153 -0.5122 31 1 7.9677 -4.0875 2.2658 32 1 4.9441 -3.6711 1.7019 33 1 3.6204 -2.6370 2.2906 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223353582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:11 Heat of formation + Delta-G solvation = -79.961043 kcal Electronic energy + Delta-G solvation = -18725.024276 eV Core-core repulsion = 15583.440149 eV Total energy + Delta-G solvation = -3141.584127 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.64673 -39.10855 -38.82180 -36.49523 -35.24303 -33.48394 -32.20876 -30.90694 -28.30160 -27.50336 -27.09776 -23.79575 -23.13502 -22.82808 -19.09132 -18.69102 -18.16948 -17.70566 -17.18002 -16.73036 -16.27673 -16.01978 -15.51439 -15.22773 -14.78915 -14.62289 -14.32842 -14.03346 -14.01213 -13.30162 -13.11259 -12.88712 -12.80150 -12.67665 -12.30439 -12.25199 -12.17871 -11.67010 -11.33625 -11.15437 -10.70480 -10.56569 -10.46858 -9.91952 -9.34420 -8.31998 -6.44769 0.08701 0.33783 1.40433 1.42701 1.53880 1.61796 2.31602 2.34656 2.67133 3.00022 3.21762 3.64809 3.74034 3.86065 4.11880 4.33160 4.37879 4.41070 4.43749 4.45686 4.54491 4.64625 4.73234 4.79467 4.87885 5.07799 5.14190 5.32176 5.55238 5.58430 5.95467 6.33083 6.46264 6.81303 7.07587 7.26720 8.76309 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021119 B = 0.005898 C = 0.005009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.524939 B = 4746.081791 C = 5588.882066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.321 6.321 3 C 0.089 3.911 4 C -0.165 4.165 5 C -0.116 4.116 6 C 0.043 3.957 7 N -0.473 5.473 8 C 0.069 3.931 9 C 0.109 3.891 10 O -0.394 6.394 11 C 0.219 3.781 12 H 0.007 0.993 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.025 3.975 16 N -0.909 5.909 17 Si 0.972 3.028 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.272 1.272 21 C -0.012 4.012 22 Cl -0.217 7.217 23 H 0.069 0.931 24 H 0.075 0.925 25 H 0.110 0.890 26 H 0.177 0.823 27 H 0.184 0.816 28 H 0.185 0.815 29 H 0.084 0.916 30 H 0.031 0.969 31 H 0.273 0.727 32 H 0.092 0.908 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.813 9.531 -4.282 18.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.040 3.960 4 C -0.192 4.192 5 C -0.135 4.135 6 C -0.115 4.115 7 N -0.184 5.184 8 C -0.069 4.069 9 C 0.032 3.968 10 O -0.313 6.313 11 C 0.162 3.838 12 H 0.025 0.975 13 C -0.584 4.584 14 H 0.076 0.924 15 C -0.176 4.176 16 N -0.546 5.546 17 Si 0.795 3.205 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.196 1.196 21 C -0.075 4.075 22 Cl -0.191 7.191 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.194 0.806 27 H 0.201 0.799 28 H 0.202 0.798 29 H 0.102 0.898 30 H 0.049 0.951 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.852 9.240 -4.282 17.193 hybrid contribution -0.242 -0.431 0.369 0.617 sum -14.093 8.809 -3.913 17.074 Atomic orbital electron populations 1.23415 0.76320 1.05542 1.02642 1.86250 1.23550 1.25676 1.87814 1.19995 0.92482 0.86735 0.96774 1.22117 1.02293 0.91015 1.03739 1.22472 0.94926 0.99632 0.96471 1.23272 0.93040 0.96106 0.99100 1.67441 1.41995 0.98543 1.10419 1.20411 0.89502 0.93291 1.03697 1.21323 0.96845 0.92892 0.85741 1.87854 1.73661 1.44905 1.24915 1.19765 0.87049 0.80053 0.96950 0.97533 1.21204 1.21490 1.10074 1.05590 0.92401 1.25760 0.95868 0.94725 1.01235 1.70051 1.33655 1.16827 1.34099 0.85361 0.77814 0.78535 0.78771 1.18982 1.20056 1.19645 1.25265 0.96178 1.03265 0.82784 1.98600 1.82568 1.97910 1.39986 0.91268 0.90604 0.87153 0.80618 0.79864 0.79811 0.89804 0.95059 0.91747 0.88955 0.90256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.83 113.37 1.11 1.39 16 2 O -0.32 -10.04 9.55 -92.63 -0.88 -10.92 16 3 C 0.09 2.85 6.67 22.60 0.15 3.00 16 4 C -0.17 -3.65 9.14 22.56 0.21 -3.45 16 5 C -0.12 -2.25 10.11 22.34 0.23 -2.03 16 6 C 0.04 1.12 11.18 84.69 0.95 2.06 16 7 N -0.47 -17.75 10.27 -183.51 -1.88 -19.64 16 8 C 0.07 2.73 6.43 42.67 0.27 3.01 16 9 C 0.11 5.01 5.62 71.24 0.40 5.41 16 10 O -0.39 -20.72 9.94 -148.98 -1.48 -22.20 16 11 C 0.22 11.93 2.23 29.85 0.07 12.00 16 12 H 0.01 0.41 7.73 -2.39 -0.02 0.39 16 13 C -0.55 -31.47 8.81 25.60 0.23 -31.25 16 14 H 0.06 3.41 7.83 -2.91 -0.02 3.39 16 15 C 0.03 1.39 5.14 84.65 0.44 1.83 16 16 N -0.91 -51.22 12.17 21.45 0.26 -50.96 16 17 Si 0.97 43.05 29.55 68.60 2.03 45.07 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 19 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 20 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 21 C -0.01 -0.57 6.23 71.98 0.45 -0.13 16 22 Cl -0.22 -9.20 26.16 -2.72 -0.07 -9.27 16 23 H 0.07 1.05 7.69 -2.39 -0.02 1.04 16 24 H 0.08 1.02 7.71 -2.39 -0.02 1.00 16 25 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.18 2.40 6.45 -2.91 -0.02 2.38 16 27 H 0.18 1.74 8.06 -2.91 -0.02 1.72 16 28 H 0.18 3.47 8.06 -2.91 -0.02 3.44 16 29 H 0.08 3.72 4.53 -2.38 -0.01 3.71 16 30 H 0.03 1.50 8.09 -2.39 -0.02 1.48 16 31 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 32 H 0.09 4.76 6.78 -2.39 -0.02 4.74 16 33 H 0.08 3.72 8.14 -2.39 -0.02 3.70 16 Total: -1.00 -70.06 297.85 3.58 -66.48 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 1.12 Total: 9.59 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: 4.49 Total: -8.15 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -1.62 Total: -70.59 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -2.37 Total: -33.12 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -9.20 SS G_CDS: -0.07 Total: -9.27 kcal Total: -70.06 3.58 -66.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223353582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.479 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds