Wall clock time and date at job start Mon Mar 30 2020 00:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 8 8 C 1.50704 * 119.58253 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.46819 * 0.02971 * 8 7 6 10 10 C 1.42903 * 113.99483 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47529 * 29.99354 * 10 9 8 12 12 C 1.50699 * 109.46896 * 150.00026 * 10 9 8 13 13 H 1.07998 * 120.00314 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99844 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99895 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99755 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47419 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47158 * 120.00244 * 16 14 12 19 19 H 1.48503 * 109.46962 * 240.00035 * 16 14 12 20 20 C 1.52999 * 109.46737 * 269.99630 * 10 9 8 21 21 Cl 1.80302 * 109.47494 * 65.00436 * 20 10 9 22 22 N 1.31963 * 120.83448 * 0.02569 * 7 6 5 23 23 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 24 24 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 26 26 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 27 27 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 28 28 H 1.08003 * 120.35720 * 179.75404 * 6 5 4 29 29 H 1.08999 * 109.46494 * 120.02268 * 8 7 6 30 30 H 1.08998 * 109.47012 * 240.02575 * 8 7 6 31 31 H 0.97007 * 119.99628 * 179.97438 * 15 14 12 32 32 H 1.09010 * 109.47111 * 185.00361 * 20 10 9 33 33 H 1.09005 * 109.47690 * 304.99950 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 1.8773 3.5096 0.0000 8 6 1.0048 4.7384 0.0007 9 8 1.8275 5.9068 0.0011 10 6 1.0947 7.1336 0.0011 11 1 0.1442 6.9891 0.5145 12 6 1.8933 8.1957 0.7119 13 1 2.8632 7.9576 1.1229 14 6 1.3857 9.4715 0.8375 15 7 0.2048 9.7615 0.3365 16 14 2.3753 10.7878 1.7192 17 1 3.6612 10.2105 2.1865 18 1 2.6474 11.9106 0.7862 19 1 1.6043 11.2888 2.8852 20 6 0.8337 7.5716 -1.4414 21 17 -0.2442 6.3723 -2.2481 22 7 1.3188 2.3140 0.0000 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.0230 0.3694 0.0098 27 1 5.1256 2.5944 0.0009 28 1 3.6996 4.6313 0.0006 29 1 0.3755 4.7374 -0.8893 30 1 0.3755 4.7367 0.8907 31 1 -0.1525 10.6590 0.4253 32 1 0.3535 8.5503 -1.4428 33 1 1.7794 7.6303 -1.9802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223468756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:04 Heat of formation + Delta-G solvation = -62.386174 kcal Electronic energy + Delta-G solvation = -18316.009719 eV Core-core repulsion = 15175.187696 eV Total energy + Delta-G solvation = -3140.822023 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.44503 -38.05299 -37.00234 -34.77147 -33.40516 -32.44768 -30.95808 -29.08742 -27.41238 -25.86980 -25.21683 -22.76528 -21.86637 -20.91724 -18.06896 -17.03518 -16.34598 -15.97274 -15.73231 -15.61332 -14.90294 -14.64638 -14.25205 -13.91919 -13.38173 -13.21615 -12.90372 -12.35793 -12.11364 -11.97969 -11.63749 -11.50790 -11.18266 -11.08480 -10.94221 -10.81330 -10.42905 -10.06219 -9.71622 -9.44648 -9.39223 -9.31144 -8.65813 -8.39425 -8.00538 -6.36284 -4.42690 1.33097 1.51552 3.14342 3.16194 3.23979 3.29050 3.43464 3.96401 3.98509 4.25465 4.97765 5.03892 5.15967 5.23488 5.27855 5.34061 5.34387 5.61710 5.69270 5.83093 6.05215 6.17431 6.30414 6.33667 6.45359 6.47802 6.67276 6.86301 7.25458 7.34765 7.59749 7.89051 8.06066 8.28081 8.74020 9.25285 10.70968 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.004821 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.072009 B = 5806.215059 C = 6511.356047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.313 6.313 3 C 0.315 3.685 4 C -0.203 4.203 5 C -0.046 4.046 6 C -0.182 4.182 7 C 0.180 3.820 8 C 0.096 3.904 9 O -0.384 6.384 10 C 0.216 3.784 11 H 0.034 0.966 12 C -0.514 4.514 13 H 0.075 0.925 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.912 3.088 17 H -0.269 1.269 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.032 4.032 21 Cl -0.250 7.250 22 N -0.540 5.540 23 H 0.058 0.942 24 H 0.092 0.908 25 H 0.058 0.942 26 H 0.136 0.864 27 H 0.139 0.861 28 H 0.152 0.848 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.269 0.731 32 H 0.129 0.871 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.823 -12.256 -1.285 12.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.221 6.221 3 C 0.136 3.864 4 C -0.224 4.224 5 C -0.072 4.072 6 C -0.202 4.202 7 C 0.045 3.955 8 C 0.018 3.982 9 O -0.303 6.303 10 C 0.160 3.840 11 H 0.052 0.948 12 C -0.552 4.552 13 H 0.093 0.907 14 C -0.142 4.142 15 N -0.528 5.528 16 Si 0.739 3.261 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.095 4.095 21 Cl -0.225 7.225 22 N -0.266 5.266 23 H 0.077 0.923 24 H 0.110 0.890 25 H 0.077 0.923 26 H 0.154 0.846 27 H 0.157 0.843 28 H 0.170 0.830 29 H 0.106 0.894 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.013 -12.515 -1.360 12.748 hybrid contribution 0.681 0.869 0.317 1.149 sum 2.694 -11.646 -1.043 11.999 Atomic orbital electron populations 1.22809 0.77528 1.02460 1.02662 1.86201 1.22729 1.24781 1.88340 1.19670 0.89270 0.84372 0.93112 1.20959 0.91877 0.99417 1.10125 1.21442 1.00471 0.91249 0.93993 1.21940 0.94187 1.00605 1.03449 1.20810 0.92435 0.90936 0.91349 1.21295 0.91630 0.82803 1.02460 1.87776 1.33986 1.13412 1.95115 1.20036 0.93288 0.80708 0.89998 0.94814 1.21098 1.05135 0.93503 1.35481 0.90700 1.24998 0.95148 0.98633 0.95394 1.69820 1.16740 1.21471 1.44819 0.86196 0.80034 0.80661 0.79219 1.19351 1.20669 1.20653 1.25915 0.93335 0.94447 0.95771 1.98606 1.73166 1.66377 1.84302 1.66829 1.41265 0.98307 1.20170 0.92317 0.88988 0.92321 0.84643 0.84307 0.83005 0.89419 0.92004 0.92078 0.85332 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.51 16 2 O -0.31 -4.40 10.48 -18.73 -0.20 -4.60 16 3 C 0.31 4.92 7.49 -17.12 -0.13 4.80 16 4 C -0.20 -2.75 10.04 -39.28 -0.39 -3.15 16 5 C -0.05 -0.62 10.17 -39.31 -0.40 -1.02 16 6 C -0.18 -2.98 9.41 -39.43 -0.37 -3.35 16 7 C 0.18 3.27 6.78 -82.60 -0.56 2.71 16 8 C 0.10 1.88 6.08 36.01 0.22 2.10 16 9 O -0.38 -8.44 8.40 -35.23 -0.30 -8.74 16 10 C 0.22 5.19 2.38 -27.88 -0.07 5.13 16 11 H 0.03 0.88 7.79 -51.93 -0.40 0.47 16 12 C -0.51 -13.25 8.89 -34.44 -0.31 -13.56 16 13 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 14 C 0.06 1.55 5.29 -17.82 -0.09 1.45 16 15 N -0.89 -23.30 11.29 55.43 0.63 -22.68 16 16 Si 0.91 19.86 29.54 -169.99 -5.02 14.84 16 17 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 18 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 20 C -0.03 -0.73 6.17 37.16 0.23 -0.50 16 21 Cl -0.25 -5.12 26.09 -51.86 -1.35 -6.47 16 22 N -0.54 -9.40 9.13 -9.55 -0.09 -9.48 16 23 H 0.06 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.68 8.10 -51.93 -0.42 0.26 16 26 H 0.14 1.47 8.06 -52.48 -0.42 1.05 16 27 H 0.14 1.38 8.06 -52.49 -0.42 0.96 16 28 H 0.15 2.57 6.99 -52.48 -0.37 2.20 16 29 H 0.09 1.76 5.09 -51.93 -0.26 1.49 16 30 H 0.06 1.22 8.09 -51.93 -0.42 0.80 16 31 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 32 H 0.13 3.15 5.95 -51.92 -0.31 2.84 16 33 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 297.95 15.07 4.49 4.49 Total: -1.00 -27.07 297.95 -6.50 -33.58 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -3.84 Total: 2.95 kcal Atomic # 6 Polarization: -3.06 SS G_CDS: -0.82 Total: -3.88 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: 0.54 Total: -32.16 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -0.49 Total: -13.34 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Atomic # 17 Polarization: -5.12 SS G_CDS: -1.35 Total: -6.47 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -27.07 -6.50 -33.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223468756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.811 kcal (2) G-P(sol) polarization free energy of solvation -27.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds