Wall clock time and date at job start Mon Mar 30 2020 00:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35675 * 117.00248 * 2 1 4 4 C 1.38915 * 119.68314 * 179.72716 * 3 2 1 5 5 C 1.38384 * 119.11112 * 179.75573 * 4 3 2 6 6 C 1.38826 * 118.48284 * 0.51069 * 5 4 3 7 7 C 1.38048 * 119.28948 * 359.72773 * 6 5 4 8 8 C 1.50704 * 119.58253 * 179.97438 * 7 6 5 9 9 O 1.42903 * 109.46819 * 0.02971 * 8 7 6 10 10 C 1.42903 * 113.99483 * 179.97438 * 9 8 7 11 11 H 1.08996 * 109.47529 * 29.99354 * 10 9 8 12 12 C 1.50699 * 109.46896 * 150.00026 * 10 9 8 13 13 H 1.07998 * 120.00314 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99844 * 179.97438 * 12 10 9 15 15 N 1.31514 * 119.99895 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 119.99755 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47419 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.47158 * 120.00244 * 16 14 12 19 19 H 1.48503 * 109.46962 * 240.00035 * 16 14 12 20 20 C 1.52999 * 109.46737 * 269.99630 * 10 9 8 21 21 Cl 1.80302 * 109.47494 * 65.00436 * 20 10 9 22 22 N 1.31963 * 120.83448 * 0.02569 * 7 6 5 23 23 H 1.08999 * 109.46969 * 59.99622 * 1 2 3 24 24 H 1.08996 * 109.47087 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46864 * 300.00240 * 1 2 3 26 26 H 1.08003 * 120.45041 * 0.02562 * 4 3 2 27 27 H 1.07999 * 120.75530 * 180.24165 * 5 4 3 28 28 H 1.08003 * 120.35720 * 179.75404 * 6 5 4 29 29 H 1.08999 * 109.46494 * 120.02268 * 8 7 6 30 30 H 1.08998 * 109.47012 * 240.02575 * 8 7 6 31 31 H 0.97007 * 119.99628 * 179.97438 * 15 14 12 32 32 H 1.09010 * 109.47111 * 185.00361 * 20 10 9 33 33 H 1.09005 * 109.47690 * 304.99950 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2738 0.0057 5 6 4.0487 2.5130 0.0005 6 6 3.2507 3.6490 0.0006 7 6 1.8773 3.5096 0.0000 8 6 1.0048 4.7384 0.0007 9 8 1.8275 5.9068 0.0011 10 6 1.0947 7.1336 0.0011 11 1 0.1442 6.9891 0.5145 12 6 1.8933 8.1957 0.7119 13 1 2.8632 7.9576 1.1229 14 6 1.3857 9.4715 0.8375 15 7 0.2048 9.7615 0.3365 16 14 2.3753 10.7878 1.7192 17 1 3.6612 10.2105 2.1865 18 1 2.6474 11.9106 0.7862 19 1 1.6043 11.2888 2.8852 20 6 0.8337 7.5716 -1.4414 21 17 -0.2442 6.3723 -2.2481 22 7 1.3188 2.3140 0.0000 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 4.0230 0.3694 0.0098 27 1 5.1256 2.5944 0.0009 28 1 3.6996 4.6313 0.0006 29 1 0.3755 4.7374 -0.8893 30 1 0.3755 4.7367 0.8907 31 1 -0.1525 10.6590 0.4253 32 1 0.3535 8.5503 -1.4428 33 1 1.7794 7.6303 -1.9802 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223468756.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:04 Heat of formation + Delta-G solvation = -79.291660 kcal Electronic energy + Delta-G solvation = -18316.742796 eV Core-core repulsion = 15175.187696 eV Total energy + Delta-G solvation = -3141.555100 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.62908 -39.39901 -38.52213 -36.52271 -35.27520 -33.68208 -32.34365 -30.78247 -28.56781 -27.30961 -27.03869 -23.96181 -23.17025 -22.73543 -19.26026 -18.75393 -17.84101 -17.34809 -17.07628 -16.85014 -16.55989 -16.34290 -15.67200 -15.13803 -14.86772 -14.56723 -14.29289 -13.95444 -13.87391 -13.26218 -13.02236 -12.91775 -12.86547 -12.68292 -12.58204 -12.20922 -12.06561 -11.76748 -11.30426 -11.21698 -10.86735 -10.64372 -10.55623 -10.00406 -9.35632 -8.30777 -6.45180 0.12703 0.34713 1.41545 1.46417 1.58728 1.63193 2.09194 2.33818 2.67609 2.74389 3.03107 3.69362 3.90740 4.13835 4.17711 4.37051 4.40531 4.41898 4.45028 4.50559 4.52493 4.63992 4.76379 4.77392 4.92706 5.15683 5.28421 5.35700 5.51387 5.61062 5.95695 6.20833 6.42468 6.77351 6.85528 7.27306 8.76294 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.023924 B = 0.004821 C = 0.004299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.072009 B = 5806.215059 C = 6511.356047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.300 3.700 4 C -0.191 4.191 5 C -0.032 4.032 6 C -0.194 4.194 7 C 0.154 3.846 8 C 0.100 3.900 9 O -0.386 6.386 10 C 0.221 3.779 11 H 0.007 0.993 12 C -0.538 4.538 13 H 0.068 0.932 14 C 0.023 3.977 15 N -0.913 5.913 16 Si 0.975 3.025 17 H -0.266 1.266 18 H -0.274 1.274 19 H -0.278 1.278 20 C -0.023 4.023 21 Cl -0.231 7.231 22 N -0.558 5.558 23 H 0.049 0.951 24 H 0.128 0.872 25 H 0.050 0.950 26 H 0.170 0.830 27 H 0.180 0.820 28 H 0.142 0.858 29 H 0.082 0.918 30 H 0.051 0.949 31 H 0.273 0.727 32 H 0.112 0.888 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.337 -13.390 -1.247 14.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.222 6.222 3 C 0.120 3.880 4 C -0.211 4.211 5 C -0.057 4.057 6 C -0.214 4.214 7 C 0.019 3.981 8 C 0.023 3.977 9 O -0.305 6.305 10 C 0.164 3.836 11 H 0.025 0.975 12 C -0.576 4.576 13 H 0.086 0.914 14 C -0.178 4.178 15 N -0.551 5.551 16 Si 0.799 3.201 17 H -0.190 1.190 18 H -0.199 1.199 19 H -0.204 1.204 20 C -0.086 4.086 21 Cl -0.205 7.205 22 N -0.285 5.285 23 H 0.068 0.932 24 H 0.146 0.854 25 H 0.069 0.931 26 H 0.188 0.812 27 H 0.198 0.802 28 H 0.160 0.840 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 3.517 -13.664 -1.330 14.172 hybrid contribution 0.164 1.063 0.285 1.113 sum 3.682 -12.601 -1.045 13.170 Atomic orbital electron populations 1.23010 0.76317 1.04597 1.01838 1.86211 1.23952 1.23888 1.88157 1.20101 0.90391 0.84273 0.93214 1.21409 0.91210 1.00790 1.07732 1.21848 1.02176 0.89912 0.91811 1.21961 0.93762 1.01460 1.04237 1.20546 0.92970 0.90509 0.94082 1.21207 0.91853 0.82980 1.01695 1.87751 1.34175 1.13496 1.95113 1.19812 0.92016 0.81358 0.90404 0.97482 1.21311 1.05198 0.94527 1.36515 0.91381 1.25741 0.95976 1.00304 0.95768 1.69913 1.17831 1.22079 1.45308 0.85235 0.78651 0.78060 0.78142 1.19040 1.19894 1.20362 1.25556 0.93677 0.94002 0.95338 1.98602 1.72568 1.65529 1.83805 1.66705 1.42229 0.98565 1.20957 0.93194 0.85383 0.93109 0.81216 0.80249 0.84038 0.90092 0.93066 0.91762 0.87031 0.90390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.38 113.37 1.18 1.97 16 2 O -0.31 -8.27 10.48 -89.92 -0.94 -9.21 16 3 C 0.30 8.90 7.49 84.79 0.63 9.54 16 4 C -0.19 -4.58 10.04 22.47 0.23 -4.35 16 5 C -0.03 -0.77 10.17 22.45 0.23 -0.55 16 6 C -0.19 -6.22 9.41 22.37 0.21 -6.01 16 7 C 0.15 5.62 6.78 42.49 0.29 5.91 16 8 C 0.10 4.08 6.08 71.24 0.43 4.51 16 9 O -0.39 -17.50 8.40 -148.98 -1.25 -18.75 16 10 C 0.22 10.94 2.38 29.85 0.07 11.01 16 11 H 0.01 0.40 7.79 -2.39 -0.02 0.38 16 12 C -0.54 -28.23 8.89 25.60 0.23 -28.00 16 13 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 14 C 0.02 1.15 5.29 84.66 0.45 1.60 16 15 N -0.91 -48.27 11.29 21.45 0.24 -48.03 16 16 Si 0.97 40.53 29.54 68.60 2.03 42.55 16 17 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 20 C -0.02 -1.06 6.17 71.98 0.44 -0.61 16 21 Cl -0.23 -9.52 26.09 -2.72 -0.07 -9.60 16 22 N -0.56 -19.36 9.13 -297.00 -2.71 -22.07 16 23 H 0.05 1.15 8.10 -2.39 -0.02 1.13 16 24 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 26 H 0.17 2.89 8.06 -2.91 -0.02 2.86 16 27 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 28 H 0.14 4.78 6.99 -2.91 -0.02 4.76 16 29 H 0.08 3.35 5.09 -2.39 -0.01 3.34 16 30 H 0.05 2.14 8.09 -2.39 -0.02 2.12 16 31 H 0.27 13.57 8.31 -92.70 -0.77 12.80 16 32 H 0.11 5.58 5.95 -2.38 -0.01 5.56 16 33 H 0.08 3.47 8.14 -2.38 -0.02 3.45 16 Total: -1.00 -58.41 297.95 2.80 -55.61 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 1.12 Total: 14.48 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 4.39 Total: -4.97 kcal Atomic # 7 Polarization: -67.64 SS G_CDS: -2.47 Total: -70.10 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -2.19 Total: -27.96 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.55 kcal Atomic # 17 Polarization: -9.52 SS G_CDS: -0.07 Total: -9.60 kcal Total: -58.41 2.80 -55.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223468756.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.685 kcal (2) G-P(sol) polarization free energy of solvation -58.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds