Wall clock time and date at job start Mon Mar 30 2020 00:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35685 * 116.99944 * 2 1 4 4 N 1.32272 * 119.68376 * 0.02562 * 3 2 1 5 5 C 1.31930 * 121.64658 * 179.97438 * 4 3 2 6 6 C 1.38085 * 120.83544 * 0.02562 * 5 4 3 7 7 C 1.38783 * 119.28929 * 359.97313 * 6 5 4 8 8 C 1.38428 * 118.47978 * 359.73259 * 7 6 5 9 9 C 1.50700 * 120.43800 * 180.26201 * 8 7 6 10 10 O 1.42894 * 109.47713 * 0.29547 * 9 8 7 11 11 C 1.42894 * 114.00442 * 180.02562 * 10 9 8 12 12 H 1.09007 * 109.47307 * 29.99847 * 11 10 9 13 13 C 1.50700 * 109.47469 * 150.00000 * 11 10 9 14 14 H 1.07997 * 119.99821 * 359.97438 * 13 11 10 15 15 C 1.37884 * 120.00044 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99733 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 119.99634 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47410 * 60.00003 * 17 15 13 19 19 H 1.48511 * 109.46787 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47246 * 299.99494 * 17 15 13 21 21 C 1.53001 * 109.47152 * 269.99979 * 11 10 9 22 22 Cl 1.80296 * 109.46998 * 64.99734 * 21 11 10 23 23 H 1.09006 * 109.47331 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.47220 * 299.99758 * 1 2 3 25 25 H 1.08996 * 109.47672 * 59.99702 * 1 2 3 26 26 H 1.08010 * 119.58194 * 179.97438 * 5 4 3 27 27 H 1.08007 * 120.35517 * 179.97438 * 6 5 4 28 28 H 1.07997 * 120.75935 * 180.02562 * 7 6 5 29 29 H 1.09002 * 109.47277 * 120.29936 * 9 8 7 30 30 H 1.09007 * 109.47162 * 240.29078 * 9 8 7 31 31 H 0.96997 * 119.99347 * 180.02562 * 16 15 13 32 32 H 1.09002 * 109.47023 * 184.99637 * 21 11 10 33 33 H 1.08997 * 109.46914 * 304.99542 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 7 1.3184 2.3143 0.0005 5 6 1.8767 3.5096 0.0010 6 6 3.2505 3.6491 0.0005 7 6 4.0483 2.5135 0.0000 8 6 3.4321 1.2740 0.0057 9 6 4.2557 0.0120 0.0114 10 8 5.6443 0.3493 0.0167 11 6 6.5173 -0.7820 0.0217 12 1 6.0368 -1.6141 -0.4930 13 6 7.8012 -0.4289 -0.6839 14 1 7.9368 0.5603 -1.0954 15 6 8.8024 -1.3692 -0.8050 16 7 8.6371 -2.5739 -0.3042 17 14 10.3936 -0.9316 -1.6802 18 1 11.0488 0.2018 -0.9792 19 1 11.3010 -2.1073 -1.6748 20 1 10.0965 -0.5415 -3.0819 21 6 6.8229 -1.1838 1.4660 22 17 5.3086 -1.7463 2.2666 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.2513 4.3902 0.0010 27 1 3.6993 4.6315 0.0006 28 1 5.1251 2.5950 0.0001 29 1 4.0202 -0.5717 0.9014 30 1 4.0277 -0.5748 -0.8786 31 1 9.3416 -3.2352 -0.3891 32 1 7.5575 -1.9892 1.4713 33 1 7.2217 -0.3248 2.0055 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223780458.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:07 Heat of formation + Delta-G solvation = -80.803491 kcal Electronic energy + Delta-G solvation = -18534.597156 eV Core-core repulsion = 15392.976498 eV Total energy + Delta-G solvation = -3141.620658 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.65068 -39.11811 -38.70150 -36.53957 -35.37501 -33.78515 -32.11622 -30.85853 -28.18848 -27.38107 -27.07159 -23.96528 -23.11491 -22.67567 -19.36564 -18.74059 -18.14403 -17.33162 -17.09854 -16.83256 -16.32788 -16.06380 -15.55849 -15.08865 -14.94521 -14.48106 -14.37552 -13.99723 -13.90505 -13.36040 -13.14340 -12.91700 -12.83876 -12.66447 -12.42544 -12.21105 -12.14983 -11.66957 -11.34576 -11.20371 -10.76951 -10.65343 -10.56824 -9.99383 -9.27191 -8.30404 -6.45441 0.16540 0.32860 1.43464 1.45826 1.55226 1.63970 2.16417 2.34328 2.80044 2.92052 3.05266 3.46094 3.99335 4.07683 4.19158 4.35664 4.43160 4.43940 4.44982 4.49109 4.58978 4.67798 4.75586 4.82637 4.94090 5.16698 5.32260 5.36514 5.57296 5.60821 5.96276 6.26495 6.45012 6.78890 6.83810 7.27081 8.76274 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.021960 B = 0.005356 C = 0.004713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.734250 B = 5226.247818 C = 5939.878300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.326 6.326 3 C 0.305 3.695 4 N -0.547 5.547 5 C 0.128 3.872 6 C -0.199 4.199 7 C -0.034 4.034 8 C -0.170 4.170 9 C 0.106 3.894 10 O -0.390 6.390 11 C 0.221 3.779 12 H 0.004 0.996 13 C -0.541 4.541 14 H 0.067 0.933 15 C 0.022 3.978 16 N -0.913 5.913 17 Si 0.976 3.024 18 H -0.266 1.266 19 H -0.279 1.279 20 H -0.271 1.271 21 C -0.022 4.022 22 Cl -0.230 7.230 23 H 0.117 0.883 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.199 0.801 27 H 0.172 0.828 28 H 0.143 0.857 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.273 0.727 32 H 0.111 0.889 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 8.902 1.221 14.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.234 6.234 3 C 0.127 3.873 4 N -0.271 5.271 5 C -0.027 4.027 6 C -0.219 4.219 7 C -0.059 4.059 8 C -0.172 4.172 9 C 0.029 3.971 10 O -0.310 6.310 11 C 0.164 3.836 12 H 0.021 0.979 13 C -0.579 4.579 14 H 0.085 0.915 15 C -0.178 4.178 16 N -0.551 5.551 17 Si 0.800 3.200 18 H -0.191 1.191 19 H -0.204 1.204 20 H -0.196 1.196 21 C -0.085 4.085 22 Cl -0.204 7.204 23 H 0.135 0.865 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.216 0.784 27 H 0.189 0.811 28 H 0.160 0.840 29 H 0.091 0.909 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.910 8.502 1.307 14.691 hybrid contribution 1.339 -0.453 -0.299 1.444 sum -10.571 8.050 1.008 13.325 Atomic orbital electron populations 1.23054 0.75734 1.04452 1.02442 1.86260 1.24595 1.24721 1.87812 1.19569 0.88287 0.85504 0.93960 1.67395 1.40482 0.99096 1.20158 1.23082 0.93591 0.93846 0.92169 1.22356 0.94715 1.00246 1.04551 1.21519 1.01754 0.90712 0.91924 1.19923 0.91214 0.97058 1.09044 1.21172 0.81805 0.93486 1.00674 1.87726 1.14554 1.33677 1.95064 1.19769 0.89063 0.84445 0.90338 0.97858 1.21263 0.99818 0.99874 1.36900 0.91456 1.25766 1.02042 0.94314 0.95726 1.69906 1.35361 1.04608 1.45248 0.85326 0.77799 0.77985 0.78927 1.19054 1.20366 1.19630 1.25528 0.85468 1.02032 0.95464 1.98601 1.45871 1.91939 1.84007 0.86492 0.92169 0.92098 0.78393 0.81068 0.83971 0.90891 0.94419 0.91745 0.87091 0.90525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.86 10.38 113.37 1.18 2.03 16 2 O -0.33 -10.67 9.91 -90.03 -0.89 -11.56 16 3 C 0.30 10.28 7.47 84.78 0.63 10.91 16 4 N -0.55 -15.70 9.22 -308.94 -2.85 -18.54 16 5 C 0.13 2.86 11.18 84.64 0.95 3.80 16 6 C -0.20 -4.61 10.11 22.36 0.23 -4.38 16 7 C -0.03 -1.07 9.48 22.45 0.21 -0.86 16 8 C -0.17 -6.20 5.91 -19.67 -0.12 -6.31 16 9 C 0.11 4.45 5.42 71.24 0.39 4.83 16 10 O -0.39 -18.26 8.51 -148.98 -1.27 -19.53 16 11 C 0.22 11.25 2.38 29.85 0.07 11.32 16 12 H 0.00 0.21 7.79 -2.38 -0.02 0.19 16 13 C -0.54 -28.97 8.89 25.60 0.23 -28.74 16 14 H 0.07 3.59 7.81 -2.91 -0.02 3.57 16 15 C 0.02 1.14 5.29 84.66 0.45 1.59 16 16 N -0.91 -49.07 11.29 21.45 0.24 -48.83 16 17 Si 0.98 41.01 29.54 68.60 2.03 43.03 16 18 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 19 H -0.28 -11.36 7.11 99.48 0.71 -10.65 16 20 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 21 C -0.02 -1.04 6.17 71.98 0.44 -0.60 16 22 Cl -0.23 -9.75 26.09 -2.72 -0.07 -9.82 16 23 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.06 1.30 8.10 -2.39 -0.02 1.28 16 25 H 0.06 1.30 8.10 -2.39 -0.02 1.29 16 26 H 0.20 2.59 8.06 -2.91 -0.02 2.56 16 27 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 28 H 0.14 4.75 7.11 -2.91 -0.02 4.73 16 29 H 0.07 3.13 5.09 -2.39 -0.01 3.12 16 30 H 0.04 1.66 8.08 -2.38 -0.02 1.64 16 31 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 32 H 0.11 5.67 5.95 -2.39 -0.01 5.65 16 33 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -60.67 297.30 2.96 -57.70 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: 1.12 Total: 13.95 kcal Atomic # 6 Polarization: -11.06 SS G_CDS: 4.66 Total: -6.40 kcal Atomic # 7 Polarization: -64.77 SS G_CDS: -2.60 Total: -67.37 kcal Atomic # 8 Polarization: -28.93 SS G_CDS: -2.16 Total: -31.09 kcal Atomic # 14 Polarization: 41.01 SS G_CDS: 2.03 Total: 43.03 kcal Atomic # 17 Polarization: -9.75 SS G_CDS: -0.07 Total: -9.82 kcal Total: -60.67 2.96 -57.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223780458.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.100 kcal (2) G-P(sol) polarization free energy of solvation -60.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds