Wall clock time and date at job start Mon Mar 30 2020 00:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 117.00282 * 2 1 4 4 C 1.39139 * 120.47490 * 179.97438 * 3 2 1 5 5 C 1.38542 * 118.37524 * 180.02562 * 4 3 2 6 6 C 1.38260 * 119.21834 * 359.97025 * 5 4 3 7 7 C 1.50699 * 119.55481 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.47254 * 359.97438 * 7 6 5 9 9 C 1.42893 * 114.00174 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47367 * 29.99511 * 9 8 7 11 11 C 1.50702 * 109.47542 * 149.99946 * 9 8 7 12 12 H 1.08006 * 119.99619 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00622 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99263 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00318 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46872 * 60.00234 * 15 13 11 17 17 H 1.48494 * 109.47125 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47248 * 300.00396 * 15 13 11 19 19 C 1.53003 * 109.46931 * 269.99514 * 9 8 7 20 20 Cl 1.80301 * 109.46744 * 65.00354 * 19 9 8 21 21 N 1.31846 * 120.88733 * 0.02755 * 6 5 4 22 22 C 1.31844 * 121.78099 * 359.97438 * 21 6 5 23 23 H 1.09007 * 109.46745 * 60.00676 * 1 2 3 24 24 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47133 * 300.00865 * 1 2 3 26 26 H 1.07997 * 120.81305 * 0.03448 * 4 3 2 27 27 H 1.07994 * 120.39104 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47230 * 119.97621 * 7 6 5 29 29 H 1.08999 * 109.46965 * 239.97980 * 7 6 5 30 30 H 0.97001 * 119.99663 * 180.02562 * 14 13 11 31 31 H 1.09005 * 109.46943 * 184.99492 * 19 9 8 32 32 H 1.08996 * 109.47717 * 305.00188 * 19 9 8 33 33 H 1.08004 * 119.65420 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0183 2.5518 0.0011 6 6 3.2080 3.6721 0.0004 7 6 3.8345 5.0426 0.0004 8 8 5.2579 4.9158 0.0017 9 6 5.9527 6.1644 0.0024 10 1 5.3513 6.9146 0.5155 11 6 7.2716 6.0051 0.7140 12 1 7.5513 5.0460 1.1243 13 6 8.1215 7.0833 0.8403 14 7 7.7810 8.2510 0.3402 15 14 9.7559 6.8859 1.7231 16 1 10.5753 5.8631 1.0246 17 1 10.4780 8.1834 1.7236 18 1 9.5134 6.4543 3.1231 19 6 6.2021 6.6099 -1.4399 20 17 4.6247 6.9423 -2.2475 21 7 1.8945 3.5574 -0.0002 22 6 1.3003 2.3804 -0.0006 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8899 26 1 4.0433 0.4029 0.0004 27 1 5.0933 2.6551 0.0011 28 1 3.5190 5.5864 -0.8901 29 1 3.5175 5.5870 0.8899 30 1 8.3791 9.0095 0.4287 31 1 6.8086 7.5157 -1.4407 32 1 6.7269 5.8209 -1.9785 33 1 0.2216 2.3265 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224014335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:14 Heat of formation + Delta-G solvation = -62.192882 kcal Electronic energy + Delta-G solvation = -18170.586573 eV Core-core repulsion = 15029.772932 eV Total energy + Delta-G solvation = -3140.813641 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.52840 -38.31161 -37.02844 -34.73742 -33.34904 -32.27287 -31.09158 -28.93798 -27.76254 -25.69332 -25.16889 -23.19099 -21.67541 -20.88459 -18.16528 -16.97924 -16.88659 -15.96364 -15.72380 -15.55987 -14.92813 -14.50182 -14.24695 -14.06595 -13.38307 -13.36463 -12.92626 -12.41282 -12.10105 -12.05263 -11.94321 -11.68370 -11.24451 -11.09749 -11.02966 -10.80787 -10.41157 -9.99178 -9.53167 -9.42910 -9.37421 -9.21096 -8.63254 -8.44221 -7.92077 -6.33767 -4.40386 1.30741 1.41830 3.11555 3.18887 3.24856 3.27211 3.46670 3.93319 4.06625 4.31387 4.67686 4.80363 4.94311 5.00491 5.03334 5.15427 5.25124 5.47087 5.59065 5.91035 6.04651 6.15074 6.25403 6.32173 6.36899 6.51247 6.71949 6.89265 7.19031 7.28558 7.61450 7.91802 8.12634 8.31905 8.75781 9.27375 10.73381 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.004487 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.760400 B = 6239.053668 C = 7075.074839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.316 6.316 3 C 0.059 3.941 4 C -0.110 4.110 5 C -0.104 4.104 6 C 0.108 3.892 7 C 0.101 3.899 8 O -0.386 6.386 9 C 0.217 3.783 10 H 0.034 0.966 11 C -0.516 4.516 12 H 0.073 0.927 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.913 3.087 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.273 1.273 19 C -0.032 4.032 20 Cl -0.250 7.250 21 N -0.452 5.452 22 C 0.018 3.982 23 H 0.056 0.944 24 H 0.099 0.901 25 H 0.056 0.944 26 H 0.140 0.860 27 H 0.157 0.843 28 H 0.086 0.914 29 H 0.060 0.940 30 H 0.270 0.730 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.940 -10.898 -1.305 14.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.228 6.228 3 C 0.012 3.988 4 C -0.137 4.137 5 C -0.124 4.124 6 C -0.030 4.030 7 C 0.023 3.977 8 O -0.306 6.306 9 C 0.161 3.839 10 H 0.052 0.948 11 C -0.554 4.554 12 H 0.092 0.908 13 C -0.142 4.142 14 N -0.529 5.529 15 Si 0.740 3.260 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.199 1.199 19 C -0.095 4.095 20 Cl -0.224 7.224 21 N -0.163 5.163 22 C -0.140 4.140 23 H 0.074 0.926 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.158 0.842 27 H 0.175 0.825 28 H 0.104 0.896 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.091 0.909 33 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.302 -10.301 -1.381 14.633 hybrid contribution 0.866 -0.411 0.327 1.013 sum -9.436 -10.712 -1.054 14.314 Atomic orbital electron populations 1.23060 0.78481 1.03934 1.01495 1.86049 1.21271 1.26422 1.89065 1.20042 0.93332 0.85478 0.99936 1.20982 0.91407 0.99002 1.02294 1.21986 1.03041 0.90781 0.96599 1.21128 0.88519 0.96318 0.97072 1.21217 0.83468 0.90661 1.02328 1.87744 1.14649 1.33074 1.95120 1.20011 0.92567 0.81402 0.89969 0.94786 1.21025 1.01269 0.97424 1.35649 0.90834 1.24995 0.99045 0.94719 0.95397 1.69803 1.37509 1.00784 1.44759 0.86299 0.82115 0.77483 0.80142 1.19860 1.21018 1.19852 1.25907 0.82534 1.05256 0.95790 1.98607 1.42855 1.96669 1.84264 1.67124 1.11759 1.26622 1.10797 1.22727 1.00056 0.87024 1.04233 0.92565 0.88233 0.92554 0.84229 0.82509 0.89640 0.92248 0.91979 0.85357 0.90919 0.82869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.82 101.05 0.99 1.19 16 2 O -0.32 -3.78 10.51 -19.45 -0.20 -3.98 16 3 C 0.06 0.82 6.71 -39.07 -0.26 0.56 16 4 C -0.11 -1.59 10.13 -39.13 -0.40 -1.99 16 5 C -0.10 -1.74 9.41 -39.46 -0.37 -2.11 16 6 C 0.11 1.97 6.78 -82.58 -0.56 1.41 16 7 C 0.10 2.01 6.08 36.01 0.22 2.23 16 8 O -0.39 -8.59 8.40 -35.23 -0.30 -8.89 16 9 C 0.22 5.26 2.38 -27.88 -0.07 5.20 16 10 H 0.03 0.89 7.79 -51.93 -0.40 0.49 16 11 C -0.52 -13.40 8.89 -34.44 -0.31 -13.70 16 12 H 0.07 1.91 7.81 -52.48 -0.41 1.50 16 13 C 0.06 1.56 5.29 -17.82 -0.09 1.47 16 14 N -0.89 -23.47 11.29 55.43 0.63 -22.84 16 15 Si 0.91 20.00 29.54 -169.99 -5.02 14.97 16 16 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 17 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 19 C -0.03 -0.74 6.17 37.16 0.23 -0.51 16 20 Cl -0.25 -5.16 26.09 -51.86 -1.35 -6.52 16 21 N -0.45 -7.82 10.27 -9.35 -0.10 -7.91 16 22 C 0.02 0.25 10.22 -17.37 -0.18 0.08 16 23 H 0.06 0.38 7.68 -51.92 -0.40 -0.02 16 24 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 26 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.16 2.65 6.99 -52.49 -0.37 2.28 16 28 H 0.09 1.74 5.09 -51.93 -0.26 1.47 16 29 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.13 3.16 5.95 -51.93 -0.31 2.85 16 32 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 33 H 0.15 1.68 6.32 -52.48 -0.33 1.35 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -27.70 295.34 -6.39 -34.09 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -3.71 Total: 2.81 kcal Atomic # 6 Polarization: -5.39 SS G_CDS: -0.79 Total: -6.18 kcal Atomic # 7 Polarization: -31.29 SS G_CDS: 0.53 Total: -30.76 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.50 Total: -12.87 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 17 Polarization: -5.16 SS G_CDS: -1.35 Total: -6.52 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.70 -6.39 -34.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224014335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.100 kcal (2) G-P(sol) polarization free energy of solvation -27.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds