Wall clock time and date at job start Mon Mar 30 2020 00:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35909 * 117.00282 * 2 1 4 4 C 1.39139 * 120.47490 * 179.97438 * 3 2 1 5 5 C 1.38542 * 118.37524 * 180.02562 * 4 3 2 6 6 C 1.38260 * 119.21834 * 359.97025 * 5 4 3 7 7 C 1.50699 * 119.55481 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.47254 * 359.97438 * 7 6 5 9 9 C 1.42893 * 114.00174 * 180.02562 * 8 7 6 10 10 H 1.08994 * 109.47367 * 29.99511 * 9 8 7 11 11 C 1.50702 * 109.47542 * 149.99946 * 9 8 7 12 12 H 1.08006 * 119.99619 * 0.02562 * 11 9 8 13 13 C 1.37877 * 120.00622 * 179.97438 * 11 9 8 14 14 N 1.31515 * 119.99263 * 0.02562 * 13 11 9 15 15 Si 1.86798 * 120.00318 * 179.97438 * 13 11 9 16 16 H 1.48506 * 109.46872 * 60.00234 * 15 13 11 17 17 H 1.48494 * 109.47125 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47248 * 300.00396 * 15 13 11 19 19 C 1.53003 * 109.46931 * 269.99514 * 9 8 7 20 20 Cl 1.80301 * 109.46744 * 65.00354 * 19 9 8 21 21 N 1.31846 * 120.88733 * 0.02755 * 6 5 4 22 22 C 1.31844 * 121.78099 * 359.97438 * 21 6 5 23 23 H 1.09007 * 109.46745 * 60.00676 * 1 2 3 24 24 H 1.08999 * 109.47164 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.47133 * 300.00865 * 1 2 3 26 26 H 1.07997 * 120.81305 * 0.03448 * 4 3 2 27 27 H 1.07994 * 120.39104 * 180.02562 * 5 4 3 28 28 H 1.09001 * 109.47230 * 119.97621 * 7 6 5 29 29 H 1.08999 * 109.46965 * 239.97980 * 7 6 5 30 30 H 0.97001 * 119.99663 * 180.02562 * 14 13 11 31 31 H 1.09005 * 109.46943 * 184.99492 * 19 9 8 32 32 H 1.08996 * 109.47717 * 305.00188 * 19 9 8 33 33 H 1.08004 * 119.65420 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 3.4349 1.2952 0.0005 5 6 4.0183 2.5518 0.0011 6 6 3.2080 3.6721 0.0004 7 6 3.8345 5.0426 0.0004 8 8 5.2579 4.9158 0.0017 9 6 5.9527 6.1644 0.0024 10 1 5.3513 6.9146 0.5155 11 6 7.2716 6.0051 0.7140 12 1 7.5513 5.0460 1.1243 13 6 8.1215 7.0833 0.8403 14 7 7.7810 8.2510 0.3402 15 14 9.7559 6.8859 1.7231 16 1 10.5753 5.8631 1.0246 17 1 10.4780 8.1834 1.7236 18 1 9.5134 6.4543 3.1231 19 6 6.2021 6.6099 -1.4399 20 17 4.6247 6.9423 -2.2475 21 7 1.8945 3.5574 -0.0002 22 6 1.3003 2.3804 -0.0006 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8899 26 1 4.0433 0.4029 0.0004 27 1 5.0933 2.6551 0.0011 28 1 3.5190 5.5864 -0.8901 29 1 3.5175 5.5870 0.8899 30 1 8.3791 9.0095 0.4287 31 1 6.8086 7.5157 -1.4407 32 1 6.7269 5.8209 -1.9785 33 1 0.2216 2.3265 -0.0007 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224014335.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:14 Heat of formation + Delta-G solvation = -78.869952 kcal Electronic energy + Delta-G solvation = -18171.309745 eV Core-core repulsion = 15029.772932 eV Total energy + Delta-G solvation = -3141.536813 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.66160 -39.50731 -38.62595 -36.50302 -35.25179 -33.44349 -32.52439 -30.67098 -28.56103 -27.27523 -26.92451 -24.34631 -23.03311 -22.66535 -19.19159 -18.71849 -18.22046 -17.31539 -17.08804 -16.86746 -16.49700 -16.18505 -15.60385 -15.08392 -14.97127 -14.69128 -14.28625 -13.93361 -13.86295 -13.42193 -13.15247 -12.90759 -12.83784 -12.67693 -12.60961 -12.30727 -12.18788 -11.70596 -11.30465 -11.19439 -10.72030 -10.58349 -10.44821 -10.04121 -9.25191 -8.29519 -6.44186 0.10855 0.23328 1.44525 1.46876 1.56127 1.65092 2.23109 2.33811 2.70843 2.74471 3.04396 3.62897 3.73108 3.83542 4.11387 4.31412 4.41491 4.43444 4.44153 4.47727 4.57248 4.72081 4.73889 4.78273 4.92216 4.95113 5.15196 5.36246 5.51157 5.61547 5.97024 6.22364 6.43878 6.78774 6.92278 7.28125 8.77106 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025316 B = 0.004487 C = 0.003957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1105.760400 B = 6239.053668 C = 7075.074839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.321 6.321 3 C 0.072 3.928 4 C -0.111 4.111 5 C -0.113 4.113 6 C 0.079 3.921 7 C 0.105 3.895 8 O -0.389 6.389 9 C 0.222 3.778 10 H 0.008 0.992 11 C -0.540 4.540 12 H 0.068 0.932 13 C 0.022 3.978 14 N -0.913 5.913 15 Si 0.975 3.025 16 H -0.266 1.266 17 H -0.279 1.279 18 H -0.271 1.271 19 C -0.023 4.023 20 Cl -0.230 7.230 21 N -0.471 5.471 22 C 0.018 3.982 23 H 0.067 0.933 24 H 0.126 0.874 25 H 0.067 0.933 26 H 0.163 0.837 27 H 0.147 0.853 28 H 0.080 0.920 29 H 0.049 0.951 30 H 0.273 0.727 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 -12.646 -1.267 16.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.234 6.234 3 C 0.024 3.976 4 C -0.137 4.137 5 C -0.133 4.133 6 C -0.058 4.058 7 C 0.028 3.972 8 O -0.309 6.309 9 C 0.164 3.836 10 H 0.026 0.974 11 C -0.578 4.578 12 H 0.086 0.914 13 C -0.178 4.178 14 N -0.551 5.551 15 Si 0.799 3.201 16 H -0.191 1.191 17 H -0.204 1.204 18 H -0.196 1.196 19 C -0.086 4.086 20 Cl -0.204 7.204 21 N -0.182 5.182 22 C -0.141 4.141 23 H 0.086 0.914 24 H 0.144 0.856 25 H 0.086 0.914 26 H 0.181 0.819 27 H 0.165 0.835 28 H 0.097 0.903 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.095 0.905 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -11.061 -12.056 -1.352 16.417 hybrid contribution 0.881 0.010 0.294 0.929 sum -10.180 -12.046 -1.057 15.807 Atomic orbital electron populations 1.23460 0.75949 1.06174 1.02597 1.86065 1.23818 1.25106 1.88392 1.20077 0.93237 0.86230 0.98064 1.21195 0.92285 0.98799 1.01438 1.21885 1.02460 0.91458 0.97519 1.20837 0.89341 0.95557 1.00021 1.21140 0.82150 0.92401 1.01547 1.87724 1.16046 1.31976 1.95116 1.19792 0.91888 0.81482 0.90388 0.97442 1.21265 1.02311 0.97547 1.36691 0.91407 1.25746 1.02052 0.94241 0.95777 1.69902 1.38590 1.01331 1.45255 0.85335 0.78147 0.77670 0.78947 1.19119 1.20425 1.19640 1.25549 0.83289 1.04415 0.95348 1.98603 1.41451 1.96613 1.83759 1.67070 1.11275 1.28389 1.11475 1.23256 1.01602 0.86239 1.02974 0.91426 0.85614 0.91409 0.81896 0.83520 0.90284 0.93307 0.91748 0.87023 0.90462 0.79547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.82 113.37 1.11 1.25 16 2 O -0.32 -6.65 10.51 -92.52 -0.97 -7.62 16 3 C 0.07 1.82 6.71 22.60 0.15 1.97 16 4 C -0.11 -3.03 10.13 22.56 0.23 -2.80 16 5 C -0.11 -3.77 9.41 22.35 0.21 -3.56 16 6 C 0.08 2.93 6.78 42.56 0.29 3.22 16 7 C 0.10 4.33 6.08 71.24 0.43 4.77 16 8 O -0.39 -17.88 8.40 -148.98 -1.25 -19.13 16 9 C 0.22 11.08 2.38 29.85 0.07 11.15 16 10 H 0.01 0.43 7.79 -2.39 -0.02 0.41 16 11 C -0.54 -28.65 8.89 25.60 0.23 -28.42 16 12 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 13 C 0.02 1.15 5.29 84.65 0.45 1.60 16 14 N -0.91 -48.64 11.29 21.45 0.24 -48.40 16 15 Si 0.97 40.85 29.54 68.60 2.03 42.88 16 16 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 17 H -0.28 -11.36 7.11 99.48 0.71 -10.66 16 18 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 19 C -0.02 -1.08 6.17 71.98 0.44 -0.63 16 20 Cl -0.23 -9.59 26.09 -2.72 -0.07 -9.66 16 21 N -0.47 -15.99 10.27 -183.48 -1.88 -17.87 16 22 C 0.02 0.48 10.22 84.80 0.87 1.34 16 23 H 0.07 0.65 7.68 -2.38 -0.02 0.64 16 24 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.07 0.65 7.68 -2.39 -0.02 0.64 16 26 H 0.16 3.57 8.06 -2.91 -0.02 3.54 16 27 H 0.15 5.08 6.99 -2.91 -0.02 5.06 16 28 H 0.08 3.31 5.09 -2.39 -0.01 3.29 16 29 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 30 H 0.27 13.76 8.31 -92.71 -0.77 12.99 16 31 H 0.11 5.63 5.95 -2.38 -0.01 5.61 16 32 H 0.08 3.48 8.14 -2.39 -0.02 3.46 16 33 H 0.19 3.46 6.32 -2.91 -0.02 3.45 16 Total: -1.00 -59.42 295.34 3.70 -55.72 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.13 Total: 14.20 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: 4.48 Total: -10.11 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: -1.64 Total: -66.27 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -2.22 Total: -26.75 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 2.03 Total: 42.88 kcal Atomic # 17 Polarization: -9.59 SS G_CDS: -0.07 Total: -9.66 kcal Total: -59.42 3.70 -55.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224014335.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.149 kcal (2) G-P(sol) polarization free energy of solvation -59.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds