Wall clock time and date at job start Mon Mar 30 2020 00:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35675 * 116.99715 * 2 1 4 4 N 1.29453 * 125.41742 * 359.97438 * 3 2 1 5 5 N 1.37760 * 115.64473 * 180.02562 * 4 3 2 6 6 C 1.29460 * 115.63607 * 359.97438 * 5 4 3 7 7 O 1.35662 * 125.41903 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99715 * 0.02562 * 7 6 5 9 9 H 1.08990 * 110.88506 * 32.42770 * 8 7 6 10 10 C 1.55165 * 111.00385 * 156.35255 * 8 7 6 11 11 C 1.54327 * 103.02096 * 153.38359 * 10 8 7 12 12 N 1.47032 * 107.26586 * 338.13514 * 11 10 8 13 13 C 1.36931 * 125.64719 * 178.85180 * 12 11 10 14 14 H 1.08002 * 120.00103 * 179.69760 * 13 12 11 15 15 C 1.38812 * 120.00429 * 359.69263 * 13 12 11 16 16 N 1.31624 * 119.99535 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48490 * 109.47339 * 180.02562 * 17 15 13 19 19 H 1.48493 * 109.47239 * 300.00542 * 17 15 13 20 20 H 1.48504 * 109.46636 * 60.00101 * 17 15 13 21 21 C 1.47428 * 108.70123 * 358.58848 * 12 11 10 22 22 S 1.76049 * 109.16998 * 0.23965 * 6 5 4 23 23 H 1.09002 * 109.47300 * 60.00369 * 1 2 3 24 24 H 1.09005 * 109.47133 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47386 * 299.99492 * 1 2 3 26 26 H 1.09004 * 110.71558 * 271.93916 * 10 8 7 27 27 H 1.08999 * 110.71844 * 35.03066 * 10 8 7 28 28 H 1.09006 * 109.99153 * 218.66631 * 11 10 8 29 29 H 1.08994 * 109.78600 * 97.49281 * 11 10 8 30 30 H 0.97005 * 119.99717 * 179.97438 * 16 15 13 31 31 H 1.08997 * 110.36556 * 143.19064 * 21 12 11 32 32 H 1.08991 * 110.36533 * 265.40365 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 7 1.4454 2.3563 -0.0005 5 7 2.2700 3.4598 -0.0009 6 6 3.5402 3.2098 -0.0003 7 8 4.5251 4.1427 -0.0011 8 6 4.1205 5.5133 -0.0021 9 1 3.1861 5.6430 0.5438 10 6 5.2356 6.4229 0.5781 11 6 4.9659 7.7812 -0.1031 12 7 4.1914 7.5113 -1.3233 13 6 3.7306 8.4557 -2.2013 14 1 3.1725 8.1538 -3.0753 15 6 3.9807 9.8010 -1.9681 16 7 4.6613 10.1688 -0.9032 17 14 3.3528 11.0893 -3.1662 18 1 3.7500 12.4399 -2.6939 19 1 3.9373 10.8432 -4.5089 20 1 1.8722 11.0087 -3.2485 21 6 3.9984 6.0550 -1.4483 22 16 3.7864 1.4666 -0.0060 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5137 0.8900 26 1 5.1407 6.5063 1.6608 27 1 6.2214 6.0453 0.3067 28 1 5.9093 8.2622 -0.3617 29 1 4.3920 8.4220 0.5661 30 1 4.8365 11.1089 -0.7404 31 1 3.0102 5.8367 -1.8530 32 1 4.7716 5.6231 -2.0836 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226524508.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:53 Heat of formation + Delta-G solvation = 37.729119 kcal Electronic energy + Delta-G solvation = -18217.647725 eV Core-core repulsion = 15115.503484 eV Total energy + Delta-G solvation = -3102.144241 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.29964 -39.41508 -37.90760 -36.32905 -32.37220 -30.64010 -29.33590 -28.11688 -27.54063 -25.04500 -24.18710 -21.89569 -20.34824 -20.09344 -19.76352 -18.11403 -17.08671 -16.76824 -16.66081 -15.56435 -15.19282 -14.80917 -14.45264 -14.26935 -13.41423 -13.30328 -13.01486 -12.49384 -12.42290 -12.15721 -11.84833 -11.53306 -10.99605 -10.83337 -10.65559 -10.56787 -10.37539 -10.30717 -10.12831 -9.96027 -9.74154 -9.45172 -8.99505 -8.64362 -6.91571 -5.75741 -3.10211 -0.12486 0.77581 0.89749 2.18367 2.61900 3.39475 3.41705 3.44923 3.46827 4.13717 4.48538 4.60560 4.92469 4.92960 5.14247 5.24883 5.32446 5.50756 5.58106 5.65431 6.05145 6.27439 6.35965 6.41896 6.46582 6.56543 7.09958 7.47740 7.50276 7.75497 7.79585 8.18559 9.16121 9.75445 10.39111 11.36200 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.034705 B = 0.003989 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.614176 B = 7017.359156 C = 7568.297097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.276 6.276 3 C 0.213 3.787 4 N -0.316 5.316 5 N -0.315 5.315 6 C 0.242 3.758 7 O -0.263 6.263 8 C 0.069 3.931 9 H 0.098 0.902 10 C -0.136 4.136 11 C 0.179 3.821 12 N -0.600 5.600 13 C -0.230 4.230 14 H 0.079 0.921 15 C -0.006 4.006 16 N -0.923 5.923 17 Si 0.916 3.084 18 H -0.289 1.289 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.124 3.876 22 S 0.147 5.853 23 H 0.067 0.933 24 H 0.108 0.892 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.254 0.746 31 H 0.049 0.951 32 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.835 -19.548 4.078 20.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.179 6.179 3 C -0.115 4.115 4 N -0.161 5.161 5 N -0.162 5.162 6 C -0.086 4.086 7 O -0.164 6.164 8 C 0.010 3.990 9 H 0.116 0.884 10 C -0.174 4.174 11 C 0.055 3.945 12 N -0.328 5.328 13 C -0.358 4.358 14 H 0.097 0.903 15 C -0.202 4.202 16 N -0.570 5.570 17 Si 0.746 3.254 18 H -0.215 1.215 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.003 4.003 22 S 0.382 5.618 23 H 0.085 0.915 24 H 0.126 0.874 25 H 0.085 0.915 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.733 -19.349 4.058 19.958 hybrid contribution -0.677 0.878 -0.595 1.258 sum -3.410 -18.471 3.463 19.100 Atomic orbital electron populations 1.23193 0.75718 1.04147 1.03387 1.86314 1.23536 1.19781 1.88259 1.27258 0.93823 0.90010 1.00404 1.75300 1.25891 0.93133 1.21734 1.75460 0.98603 1.18259 1.23863 1.27363 0.90472 0.93275 0.97442 1.86384 1.26925 1.16771 1.86309 1.24236 1.00223 0.74058 1.00491 0.88423 1.23134 0.97249 0.96851 1.00193 1.21231 0.96752 0.89222 0.87315 1.44307 1.63515 0.99095 1.25885 1.19026 1.28988 0.85855 1.01974 0.90269 1.24816 1.00364 0.96933 0.98128 1.69923 1.44121 1.15613 1.27377 0.86138 0.78498 0.80673 0.80102 1.21511 1.21087 1.21035 1.21844 0.99241 0.86897 0.92331 1.85782 0.99379 0.97847 1.78770 0.91464 0.87355 0.91512 0.91005 0.90940 0.92994 0.92778 0.93538 0.93315 0.95383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.66 101.05 1.08 1.33 16 2 O -0.28 -2.92 10.56 -18.73 -0.20 -3.12 16 3 C 0.21 2.75 8.45 51.76 0.44 3.19 16 4 N -0.32 -4.94 11.43 30.17 0.34 -4.60 16 5 N -0.32 -5.51 11.02 30.17 0.33 -5.18 16 6 C 0.24 3.82 8.44 51.76 0.44 4.25 16 7 O -0.26 -4.42 10.02 -18.69 -0.19 -4.61 16 8 C 0.07 1.30 3.35 -24.58 -0.08 1.22 16 9 H 0.10 1.91 7.44 -51.93 -0.39 1.52 16 10 C -0.14 -2.53 6.68 -24.89 -0.17 -2.70 16 11 C 0.18 4.32 5.38 -3.06 -0.02 4.30 16 12 N -0.60 -15.60 3.39 -170.06 -0.58 -16.18 16 13 C -0.23 -6.50 10.28 -15.06 -0.15 -6.66 16 14 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 15 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 16 N -0.92 -26.90 10.31 55.49 0.57 -26.32 16 17 Si 0.92 22.16 29.55 -169.99 -5.02 17.14 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.12 2.71 6.97 -2.53 -0.02 2.69 16 22 S 0.15 1.75 23.40 -107.50 -2.52 -0.76 16 23 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.05 1.36 7.52 -51.93 -0.39 0.97 16 29 H 0.05 1.42 7.37 -51.93 -0.38 1.04 16 30 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 LS Contribution 292.15 15.07 4.40 4.40 Total: -1.00 -31.35 292.15 -5.09 -36.44 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -3.66 Total: -4.57 kcal Atomic # 6 Polarization: 5.94 SS G_CDS: 1.42 Total: 7.36 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: 0.67 Total: -52.28 kcal Atomic # 8 Polarization: -7.34 SS G_CDS: -0.38 Total: -7.73 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.52 Total: -0.76 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -31.35 -5.09 -36.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226524508.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.172 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds