Wall clock time and date at job start Mon Mar 30 2020 00:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35665 * 116.99853 * 2 1 4 4 N 1.29455 * 125.42090 * 359.97438 * 3 2 1 5 5 N 1.37763 * 115.64052 * 180.02562 * 4 3 2 6 6 C 1.29452 * 115.64300 * 0.02562 * 5 4 3 7 7 O 1.35668 * 125.42109 * 179.97438 * 6 5 4 8 8 C 1.42906 * 116.99665 * 0.02562 * 7 6 5 9 9 C 1.53507 * 114.16874 * 210.00382 * 8 7 6 10 10 N 1.47489 * 87.92897 * 220.13926 * 9 8 7 11 11 C 1.46904 * 110.99948 * 138.70309 * 10 9 8 12 12 C 1.50696 * 109.46794 * 169.99650 * 11 10 9 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47481 * 87.83412 * 27.01215 * 10 9 8 21 21 S 1.76053 * 109.16867 * 0.23888 * 6 5 4 22 22 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47081 * 299.99524 * 1 2 3 24 24 H 1.08997 * 109.47313 * 59.99533 * 1 2 3 25 25 H 1.08995 * 113.25323 * 342.95507 * 8 7 6 26 26 H 1.08997 * 113.47543 * 105.37735 * 9 8 7 27 27 H 1.08997 * 113.47777 * 334.89811 * 9 8 7 28 28 H 1.09005 * 109.47078 * 49.99935 * 11 10 9 29 29 H 1.09002 * 109.47005 * 290.00151 * 11 10 9 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.08990 * 113.47671 * 87.75950 * 20 10 9 32 32 H 1.09001 * 113.47203 * 218.22506 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 7 1.4455 2.3562 -0.0005 5 7 2.2703 3.4597 -0.0009 6 6 3.5404 3.2096 -0.0013 7 8 4.5255 4.1425 -0.0023 8 6 4.1209 5.5131 -0.0024 9 6 5.1056 6.4591 -0.7037 10 7 4.8537 7.4339 0.3741 11 6 6.1002 8.0879 0.7943 12 6 5.7786 9.2398 1.7112 13 1 4.7511 9.4634 1.9575 14 6 6.7963 10.0077 2.2365 15 7 6.5157 11.0126 3.0371 16 14 8.5734 9.6204 1.8110 17 1 9.1219 8.6601 2.8021 18 1 8.6384 9.0220 0.4535 19 1 9.3730 10.8716 1.8392 20 6 4.5324 6.2943 1.2534 21 16 3.7865 1.4664 -0.0081 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 3.0806 5.6547 -0.2952 26 1 4.7626 6.7954 -1.6821 27 1 6.1294 6.0855 -0.7205 28 1 6.6296 8.4590 -0.0833 29 1 6.7282 7.3690 1.3204 30 1 7.2316 11.5525 3.4070 31 1 5.4031 5.8767 1.7587 32 1 3.7035 6.4909 1.9335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226529895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:48 Heat of formation + Delta-G solvation = 54.958597 kcal Electronic energy + Delta-G solvation = -17766.546693 eV Core-core repulsion = 14665.149578 eV Total energy + Delta-G solvation = -3101.397115 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.62874 -40.00127 -38.67894 -37.22365 -32.85740 -30.88458 -29.90338 -28.23751 -26.11835 -25.66190 -24.55932 -22.32587 -20.73111 -20.30234 -19.55488 -18.32389 -17.01835 -16.91827 -16.81919 -15.85866 -15.59306 -15.28769 -14.78744 -14.24574 -14.03091 -13.46173 -13.16451 -12.97567 -12.55414 -12.42583 -12.25643 -11.93587 -11.76965 -11.17990 -10.80467 -10.76549 -10.58164 -10.34652 -10.13636 -9.85773 -9.60714 -9.43289 -9.16569 -8.63725 -8.23938 -6.09970 -4.08423 -0.28832 0.59896 0.73804 1.99307 2.43819 3.21030 3.23565 3.31871 3.32025 3.93606 4.36221 4.37791 4.48983 4.57498 4.81629 4.82102 5.13909 5.15465 5.19633 5.49837 5.68650 5.82552 5.95466 6.06604 6.28561 6.28781 6.58203 6.78613 7.16851 7.54407 7.60616 7.69044 8.55018 9.00333 9.50073 11.03218 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.049831 B = 0.003326 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.763908 B = 8416.203495 C = 8644.910708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.275 6.275 3 C 0.216 3.784 4 N -0.316 5.316 5 N -0.319 5.319 6 C 0.239 3.761 7 O -0.260 6.260 8 C 0.047 3.953 9 C -0.002 4.002 10 N -0.444 5.444 11 C 0.130 3.870 12 C -0.510 4.510 13 H 0.082 0.918 14 C 0.069 3.931 15 N -0.897 5.897 16 Si 0.875 3.125 17 H -0.276 1.276 18 H -0.267 1.267 19 H -0.284 1.284 20 C 0.001 3.999 21 S 0.155 5.845 22 H 0.109 0.891 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.128 0.872 26 H 0.093 0.907 27 H 0.074 0.926 28 H 0.032 0.968 29 H 0.000 1.000 30 H 0.265 0.735 31 H 0.077 0.923 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.059 -23.504 -7.541 25.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.178 6.178 3 C -0.112 4.112 4 N -0.161 5.161 5 N -0.165 5.165 6 C -0.089 4.089 7 O -0.161 6.161 8 C -0.011 4.011 9 C -0.131 4.131 10 N -0.168 5.168 11 C 0.003 3.997 12 C -0.548 4.548 13 H 0.100 0.900 14 C -0.133 4.133 15 N -0.536 5.536 16 Si 0.702 3.298 17 H -0.202 1.202 18 H -0.192 1.192 19 H -0.210 1.210 20 C -0.129 4.129 21 S 0.390 5.610 22 H 0.128 0.872 23 H 0.086 0.914 24 H 0.085 0.915 25 H 0.146 0.854 26 H 0.111 0.889 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.017 0.983 30 H 0.075 0.925 31 H 0.095 0.905 32 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.329 -22.827 -7.526 25.128 hybrid contribution 1.355 -0.445 0.081 1.429 sum -5.973 -23.272 -7.445 25.154 Atomic orbital electron populations 1.23215 0.75559 1.04300 1.03408 1.86327 1.23661 1.19669 1.88093 1.27280 0.93899 0.90037 1.00000 1.75309 1.25591 0.93087 1.22112 1.75360 0.98574 1.18744 1.23798 1.27346 0.90519 0.93361 0.97630 1.86469 1.27026 1.16382 1.86257 1.24894 1.01743 0.74032 1.00478 1.24230 0.98307 0.91452 0.99154 1.69052 1.31455 1.13138 1.03177 1.20774 0.86774 0.95508 0.96601 1.20926 0.95990 1.11330 1.26577 0.90009 1.24917 0.98816 0.94846 0.94744 1.69891 1.32748 1.18760 1.32209 0.86869 0.85477 0.78129 0.79338 1.20205 1.19207 1.20957 1.24315 1.02219 0.90657 0.95669 1.85905 0.99245 0.97430 1.78426 0.87240 0.91401 0.91460 0.85389 0.88905 0.90737 0.95020 0.98256 0.92541 0.90502 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.66 101.05 1.08 1.28 16 2 O -0.27 -2.55 10.56 -18.70 -0.20 -2.75 16 3 C 0.22 2.45 8.45 51.76 0.44 2.89 16 4 N -0.32 -4.34 11.43 30.17 0.34 -4.00 16 5 N -0.32 -4.80 10.88 30.17 0.33 -4.47 16 6 C 0.24 3.25 8.45 51.76 0.44 3.69 16 7 O -0.26 -3.75 10.26 -18.71 -0.19 -3.94 16 8 C 0.05 0.73 4.61 -26.20 -0.12 0.61 16 9 C 0.00 -0.03 7.52 -7.54 -0.06 -0.09 16 10 N -0.44 -9.20 6.32 -246.10 -1.55 -10.76 16 11 C 0.13 3.11 3.64 -4.98 -0.02 3.09 16 12 C -0.51 -14.59 9.94 -34.44 -0.34 -14.94 16 13 H 0.08 2.58 8.06 -52.49 -0.42 2.15 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -27.53 13.96 55.43 0.77 -26.75 16 16 Si 0.87 21.21 27.47 -169.99 -4.67 16.54 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 C 0.00 0.01 7.56 -7.54 -0.06 -0.04 16 21 S 0.15 1.61 23.40 -107.50 -2.52 -0.91 16 22 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 24 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.13 1.98 7.18 -51.93 -0.37 1.61 16 26 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 27 H 0.07 1.17 7.91 -51.93 -0.41 0.76 16 28 H 0.03 0.76 7.14 -51.93 -0.37 0.39 16 29 H 0.00 -0.01 6.73 -51.93 -0.35 -0.36 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.08 1.38 7.42 -51.93 -0.39 0.99 16 32 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 294.78 15.07 4.44 4.44 Total: -1.00 -32.15 294.78 -5.57 -37.72 By element: Atomic # 1 Polarization: 0.08 SS G_CDS: -3.59 Total: -3.51 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 1.26 Total: -1.61 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.11 Total: -45.98 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.39 Total: -6.70 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.67 Total: 16.54 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.52 Total: -0.91 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -32.15 -5.57 -37.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226529895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.678 kcal (2) G-P(sol) polarization free energy of solvation -32.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds