Wall clock time and date at job start Mon Mar 30 2020 00:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35665 * 116.99853 * 2 1 4 4 N 1.29455 * 125.42090 * 359.97438 * 3 2 1 5 5 N 1.37763 * 115.64052 * 180.02562 * 4 3 2 6 6 C 1.29452 * 115.64300 * 0.02562 * 5 4 3 7 7 O 1.35668 * 125.42109 * 179.97438 * 6 5 4 8 8 C 1.42906 * 116.99665 * 0.02562 * 7 6 5 9 9 C 1.53507 * 114.16874 * 210.00382 * 8 7 6 10 10 N 1.47489 * 87.92897 * 220.13926 * 9 8 7 11 11 C 1.46904 * 110.99948 * 138.70309 * 10 9 8 12 12 C 1.50696 * 109.46794 * 169.99650 * 11 10 9 13 13 H 1.07999 * 120.00319 * 0.02562 * 12 11 10 14 14 C 1.37885 * 119.99717 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99913 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 119.99766 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.47353 * 269.99586 * 16 14 12 18 18 H 1.48501 * 109.47293 * 30.00037 * 16 14 12 19 19 H 1.48504 * 109.46680 * 149.99835 * 16 14 12 20 20 C 1.47481 * 87.83412 * 27.01215 * 10 9 8 21 21 S 1.76053 * 109.16867 * 0.23888 * 6 5 4 22 22 H 1.08998 * 109.47588 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.47081 * 299.99524 * 1 2 3 24 24 H 1.08997 * 109.47313 * 59.99533 * 1 2 3 25 25 H 1.08995 * 113.25323 * 342.95507 * 8 7 6 26 26 H 1.08997 * 113.47543 * 105.37735 * 9 8 7 27 27 H 1.08997 * 113.47777 * 334.89811 * 9 8 7 28 28 H 1.09005 * 109.47078 * 49.99935 * 11 10 9 29 29 H 1.09002 * 109.47005 * 290.00151 * 11 10 9 30 30 H 0.97001 * 119.99646 * 179.97438 * 15 14 12 31 31 H 1.08990 * 113.47671 * 87.75950 * 20 10 9 32 32 H 1.09001 * 113.47203 * 218.22506 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2088 0.0000 4 7 1.4455 2.3562 -0.0005 5 7 2.2703 3.4597 -0.0009 6 6 3.5404 3.2096 -0.0013 7 8 4.5255 4.1425 -0.0023 8 6 4.1209 5.5131 -0.0024 9 6 5.1056 6.4591 -0.7037 10 7 4.8537 7.4339 0.3741 11 6 6.1002 8.0879 0.7943 12 6 5.7786 9.2398 1.7112 13 1 4.7511 9.4634 1.9575 14 6 6.7963 10.0077 2.2365 15 7 6.5157 11.0126 3.0371 16 14 8.5734 9.6204 1.8110 17 1 9.1219 8.6601 2.8021 18 1 8.6384 9.0220 0.4535 19 1 9.3730 10.8716 1.8392 20 6 4.5324 6.2943 1.2534 21 16 3.7865 1.4664 -0.0081 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 3.0806 5.6547 -0.2952 26 1 4.7626 6.7954 -1.6821 27 1 6.1294 6.0855 -0.7205 28 1 6.6296 8.4590 -0.0833 29 1 6.7282 7.3690 1.3204 30 1 7.2316 11.5525 3.4070 31 1 5.4031 5.8767 1.7587 32 1 3.7035 6.4909 1.9335 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226529895.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:47 Heat of formation + Delta-G solvation = 25.165194 kcal Electronic energy + Delta-G solvation = -17767.838631 eV Core-core repulsion = 14665.149578 eV Total energy + Delta-G solvation = -3102.689053 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.078 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.79479 -41.01800 -39.70403 -38.32704 -34.98125 -32.08725 -31.50891 -28.85921 -27.75524 -27.03120 -25.66865 -23.76109 -22.15324 -21.35808 -20.67040 -19.41395 -18.94720 -17.95240 -17.75979 -17.02721 -16.89888 -16.40499 -16.09205 -15.76511 -15.39122 -14.81444 -14.36478 -14.26808 -14.05749 -13.86770 -13.44578 -13.06039 -12.98663 -12.61259 -12.47336 -11.81540 -11.78908 -11.73239 -11.61174 -11.58724 -11.43864 -10.81588 -10.45154 -10.18946 -9.83889 -8.31024 -6.36384 -1.17927 -0.33992 -0.18241 1.00511 1.34339 1.36777 1.47243 1.49523 2.25390 2.32768 2.96640 3.01423 3.11747 3.19507 3.54416 3.87637 4.12492 4.30920 4.32293 4.36546 4.48807 4.52891 4.67463 4.69719 4.75142 4.80140 5.38909 5.54176 5.59303 5.63122 5.86347 6.46411 6.64252 6.70154 7.26879 8.86130 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.049831 B = 0.003326 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.763908 B = 8416.203495 C = 8644.910708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.273 6.273 3 C 0.216 3.784 4 N -0.343 5.343 5 N -0.346 5.346 6 C 0.216 3.784 7 O -0.259 6.259 8 C 0.071 3.929 9 C 0.004 3.996 10 N -0.476 5.476 11 C 0.141 3.859 12 C -0.523 4.523 13 H 0.031 0.969 14 C 0.006 3.994 15 N -0.949 5.949 16 Si 0.952 3.048 17 H -0.265 1.265 18 H -0.244 1.244 19 H -0.281 1.281 20 C -0.006 4.006 21 S 0.224 5.776 22 H 0.145 0.855 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.127 0.873 26 H 0.112 0.888 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.010 0.990 30 H 0.268 0.732 31 H 0.080 0.920 32 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.705 -26.335 -8.909 28.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.176 6.176 3 C -0.111 4.111 4 N -0.189 5.189 5 N -0.192 5.192 6 C -0.111 4.111 7 O -0.160 6.160 8 C 0.011 3.989 9 C -0.124 4.124 10 N -0.200 5.200 11 C 0.013 3.987 12 C -0.561 4.561 13 H 0.049 0.951 14 C -0.192 4.192 15 N -0.589 5.589 16 Si 0.774 3.226 17 H -0.190 1.190 18 H -0.167 1.167 19 H -0.206 1.206 20 C -0.135 4.135 21 S 0.460 5.540 22 H 0.163 0.837 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.145 0.855 26 H 0.130 0.870 27 H 0.107 0.893 28 H 0.056 0.944 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.004 -25.703 -8.909 27.858 hybrid contribution 0.753 0.286 0.538 0.969 sum -5.251 -25.417 -8.372 27.271 Atomic orbital electron populations 1.23524 0.73888 1.06576 1.03174 1.86371 1.25285 1.18396 1.87500 1.27593 0.94988 0.90223 0.98281 1.75290 1.25814 0.93574 1.24227 1.75306 0.99521 1.20249 1.24150 1.27608 0.90381 0.94890 0.98221 1.86438 1.27132 1.15817 1.86639 1.24415 1.01424 0.74906 0.98147 1.24263 0.99361 0.90186 0.98630 1.68907 1.30187 1.15396 1.05526 1.20540 0.88339 0.94206 0.95618 1.21193 0.93889 1.13320 1.27736 0.95062 1.25949 1.04495 0.94378 0.94356 1.70063 1.34675 1.20320 1.33851 0.85648 0.78271 0.78282 0.80367 1.18956 1.16707 1.20642 1.24346 1.02017 0.90587 0.96545 1.85707 0.97487 0.93621 1.77172 0.83696 0.91775 0.91583 0.85529 0.87010 0.89332 0.94439 0.97228 0.92290 0.90234 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.66 113.37 1.21 1.47 16 2 O -0.27 -4.45 10.56 -89.82 -0.95 -5.40 16 3 C 0.22 4.52 8.45 130.59 1.10 5.63 16 4 N -0.34 -9.11 11.43 -172.70 -1.97 -11.08 16 5 N -0.35 -10.19 10.88 -172.70 -1.88 -12.07 16 6 C 0.22 5.57 8.45 130.59 1.10 6.67 16 7 O -0.26 -7.01 10.26 -89.85 -0.92 -7.93 16 8 C 0.07 2.11 4.61 30.94 0.14 2.25 16 9 C 0.00 0.14 7.52 83.57 0.63 0.77 16 10 N -0.48 -19.61 6.32 -932.93 -5.89 -25.51 16 11 C 0.14 6.61 3.64 85.55 0.31 6.92 16 12 C -0.52 -30.76 9.94 25.60 0.25 -30.51 16 13 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 14 C 0.01 0.33 5.47 84.66 0.46 0.79 16 15 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 16 Si 0.95 43.26 27.47 68.60 1.88 45.15 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.24 -10.08 6.54 99.48 0.65 -9.43 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C -0.01 -0.20 7.56 83.58 0.63 0.43 16 21 S 0.22 4.12 23.40 -56.49 -1.32 2.80 16 22 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 23 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 24 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.13 3.86 7.18 -2.39 -0.02 3.84 16 26 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 27 H 0.09 2.50 7.91 -2.39 -0.02 2.48 16 28 H 0.04 1.72 7.14 -2.38 -0.02 1.70 16 29 H 0.01 0.45 6.73 -2.39 -0.02 0.43 16 30 H 0.27 15.69 8.31 -92.71 -0.77 14.91 16 31 H 0.08 2.80 7.42 -2.39 -0.02 2.79 16 32 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 Total: -1.00 -71.39 294.78 -3.82 -75.21 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 1.09 Total: 4.03 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 5.85 Total: -5.58 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -9.45 Total: -108.28 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.87 Total: -13.33 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 16 Polarization: 4.12 SS G_CDS: -1.32 Total: 2.80 kcal Total: -71.39 -3.82 -75.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226529895.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.375 kcal (2) G-P(sol) polarization free energy of solvation -71.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds