Wall clock time and date at job start Mon Mar 30 2020 00:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 117.00185 * 2 1 4 4 C 1.38591 * 120.06411 * 0.02562 * 3 2 1 5 5 C 1.38235 * 120.01632 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.15682 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.93578 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47248 * 260.00049 * 7 6 5 9 9 C 1.46497 * 119.99662 * 270.00015 * 8 7 6 10 10 C 1.36933 * 120.00157 * 89.99724 * 8 7 6 11 11 H 1.07996 * 120.00059 * 22.36091 * 10 8 7 12 12 C 1.38813 * 119.99917 * 202.36132 * 10 8 7 13 13 N 1.31619 * 119.99964 * 11.81381 * 12 10 8 14 14 Si 1.86803 * 119.99916 * 191.81488 * 12 10 8 15 15 H 1.48501 * 109.47097 * 59.99791 * 14 12 10 16 16 H 1.48497 * 109.47160 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47201 * 300.00029 * 14 12 10 18 18 C 1.38333 * 120.13140 * 0.02562 * 6 5 4 19 19 Cl 1.73593 * 120.01056 * 179.97438 * 18 6 5 20 20 C 1.38665 * 119.98017 * 359.72390 * 18 6 5 21 21 O 1.36019 * 120.08185 * 180.27532 * 20 18 6 22 22 H 1.08995 * 109.47384 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47383 * 59.99117 * 1 2 3 24 24 H 1.09008 * 109.46735 * 299.99643 * 1 2 3 25 25 H 1.07998 * 119.99342 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.92046 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47096 * 19.99688 * 7 6 5 28 28 H 1.09002 * 109.47016 * 139.99541 * 7 6 5 29 29 H 1.09001 * 109.47475 * 92.72216 * 9 8 7 30 30 H 1.09001 * 109.47284 * 212.72353 * 9 8 7 31 31 H 1.09006 * 109.47365 * 332.72381 * 9 8 7 32 32 H 0.97001 * 119.99937 * 180.02562 * 13 12 10 33 33 H 0.96698 * 114.00035 * 270.25314 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2930 2.3749 0.0005 5 6 1.9216 3.6060 0.0000 6 6 3.3021 3.6810 -0.0005 7 6 3.9822 5.0257 -0.0005 8 7 4.4161 5.3536 -1.3609 9 6 5.7481 4.9535 -1.8212 10 6 3.5767 6.0338 -2.2021 11 1 2.7767 6.6354 -1.7963 12 6 3.7539 5.9503 -3.5763 13 7 4.5674 5.0472 -4.0812 14 14 2.8378 7.1196 -4.7090 15 1 3.2123 8.5193 -4.3833 16 1 3.1983 6.8266 -6.1194 17 1 1.3750 6.9430 -4.5245 18 6 4.0604 2.5240 -0.0011 19 17 5.7935 2.6217 -0.0024 20 6 3.4356 1.2861 0.0047 21 8 4.1791 0.1471 0.0099 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8901 25 1 0.2144 2.3195 0.0014 26 1 1.3329 4.5115 0.0000 27 1 3.2846 5.7858 0.3513 28 1 4.8489 4.9945 0.6598 29 1 5.6857 3.9842 -2.3159 30 1 6.1281 5.6958 -2.5231 31 1 6.4217 4.8828 -0.9671 32 1 4.6916 4.9891 -5.0415 33 1 4.3973 -0.1842 -0.8720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233400565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:25 Heat of formation + Delta-G solvation = -30.501378 kcal Electronic energy + Delta-G solvation = -19055.958631 eV Core-core repulsion = 15916.519237 eV Total energy + Delta-G solvation = -3139.439395 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.10762 -37.81789 -36.73244 -35.73301 -35.01592 -31.64059 -29.69328 -29.53877 -27.44817 -25.89703 -25.22391 -22.30356 -21.91412 -20.38968 -18.24629 -17.31319 -16.83853 -16.23994 -15.72257 -15.00917 -14.79342 -14.60419 -14.04842 -13.79880 -13.64190 -13.14725 -12.51165 -12.29029 -12.13828 -11.57430 -11.47739 -11.33012 -11.04361 -10.86009 -10.78124 -10.51377 -10.46690 -10.30958 -10.10703 -9.87131 -9.66725 -8.54910 -8.20969 -7.71221 -6.77824 -5.74905 -3.18669 1.47006 1.69207 2.58080 3.36197 3.42062 3.42501 3.51652 3.87750 4.46331 4.50970 5.01512 5.16638 5.21815 5.36911 5.41123 5.47050 5.66101 5.71793 5.77007 5.89348 6.24973 6.43129 6.51530 6.62901 6.87454 6.90923 7.01342 7.40109 7.44031 7.75023 7.84649 7.96555 8.36915 9.20959 9.83222 10.33176 11.29278 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.007127 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.360838 B = 3927.753148 C = 4739.551376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.311 6.311 3 C 0.091 3.909 4 C -0.192 4.192 5 C -0.067 4.067 6 C -0.090 4.090 7 C 0.180 3.820 8 N -0.585 5.585 9 C 0.165 3.835 10 C -0.255 4.255 11 H 0.069 0.931 12 C 0.004 3.996 13 N -0.901 5.901 14 Si 0.905 3.095 15 H -0.283 1.283 16 H -0.291 1.291 17 H -0.283 1.283 18 C -0.013 4.013 19 Cl -0.051 7.051 20 C 0.076 3.924 21 O -0.481 6.481 22 H 0.096 0.904 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.129 0.871 26 H 0.131 0.869 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.031 0.969 30 H 0.043 0.957 31 H 0.001 0.999 32 H 0.253 0.747 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.081 -7.170 8.128 11.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.045 3.955 4 C -0.211 4.211 5 C -0.086 4.086 6 C -0.096 4.096 7 C 0.053 3.947 8 N -0.305 5.305 9 C 0.020 3.980 10 C -0.384 4.384 11 H 0.087 0.913 12 C -0.195 4.195 13 N -0.545 5.545 14 Si 0.735 3.265 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.210 1.210 18 C -0.042 4.042 19 Cl -0.022 7.022 20 C 0.030 3.970 21 O -0.289 6.289 22 H 0.114 0.886 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.064 0.936 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -4.771 -7.287 8.522 12.185 hybrid contribution -0.719 0.446 -1.499 1.722 sum -5.491 -6.841 7.022 11.236 Atomic orbital electron populations 1.23016 0.78955 1.03475 1.01277 1.86085 1.20768 1.26381 1.89265 1.18999 0.90897 0.84756 1.00854 1.21139 0.99734 0.92008 1.08213 1.20759 0.93508 0.96901 0.97473 1.20996 0.93462 0.97307 0.97796 1.20002 0.96532 0.89148 0.89017 1.44108 1.13066 1.63509 1.09845 1.20947 0.83192 0.99671 0.94154 1.19197 1.11731 1.20318 0.87192 0.91287 1.25063 0.99348 0.97960 0.97118 1.70077 1.39411 1.33655 1.11388 0.86337 0.79445 0.80789 0.79961 1.20978 1.21639 1.20981 1.20806 0.85490 0.92939 1.04945 1.98340 1.08978 1.98320 1.96518 1.17251 0.86257 0.85409 1.08114 1.84855 1.71720 1.39211 1.33151 0.88570 0.92738 0.92860 0.85350 0.85089 0.92449 0.92704 0.95102 0.93828 0.98085 0.93645 0.76188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.79 10.28 -34.25 -0.35 -5.14 16 3 C 0.09 1.56 6.70 -39.13 -0.26 1.29 16 4 C -0.19 -3.07 9.04 -39.45 -0.36 -3.43 16 5 C -0.07 -1.18 9.66 -39.58 -0.38 -1.57 16 6 C -0.09 -1.79 5.47 -104.58 -0.57 -2.36 16 7 C 0.18 3.72 5.40 -5.19 -0.03 3.69 16 8 N -0.58 -14.49 2.91 -182.50 -0.53 -15.02 16 9 C 0.16 4.08 7.33 59.85 0.44 4.52 16 10 C -0.25 -6.82 9.67 -15.06 -0.15 -6.97 16 11 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 12 C 0.00 0.11 5.11 -17.43 -0.09 0.02 16 13 N -0.90 -26.04 10.62 55.49 0.59 -25.45 16 14 Si 0.90 21.55 29.57 -169.99 -5.03 16.52 16 15 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 C -0.01 -0.26 6.32 -39.39 -0.25 -0.51 16 19 Cl -0.05 -0.95 23.62 -51.86 -1.22 -2.18 16 20 C 0.08 1.40 6.71 -39.10 -0.26 1.14 16 21 O -0.48 -8.07 12.75 -34.33 -0.44 -8.51 16 22 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.05 0.54 7.66 -51.93 -0.40 0.15 16 24 H 0.05 0.49 7.66 -51.92 -0.40 0.10 16 25 H 0.13 1.65 6.30 -52.49 -0.33 1.32 16 26 H 0.13 2.10 8.03 -52.48 -0.42 1.68 16 27 H 0.06 1.10 7.89 -51.93 -0.41 0.69 16 28 H 0.05 1.06 7.08 -51.93 -0.37 0.70 16 29 H 0.03 0.82 6.97 -51.93 -0.36 0.46 16 30 H 0.04 1.17 7.10 -51.93 -0.37 0.80 16 31 H 0.00 0.02 6.74 -51.93 -0.35 -0.34 16 32 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.38 5.09 9.06 45.56 0.41 5.51 16 LS Contribution 291.09 15.07 4.39 4.39 Total: -1.00 -31.35 291.09 -6.47 -37.83 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -2.96 Total: 0.45 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -0.92 Total: -2.89 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.06 Total: -40.48 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: -0.79 Total: -13.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.22 Total: -2.18 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -31.35 -6.47 -37.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233400565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.328 kcal (2) G-P(sol) polarization free energy of solvation -31.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds