Wall clock time and date at job start Mon Mar 30 2020 00:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35995 * 117.00185 * 2 1 4 4 C 1.38591 * 120.06411 * 0.02562 * 3 2 1 5 5 C 1.38235 * 120.01632 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.15682 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.93578 * 180.02562 * 6 5 4 8 8 N 1.46501 * 109.47248 * 260.00049 * 7 6 5 9 9 C 1.46497 * 119.99662 * 270.00015 * 8 7 6 10 10 C 1.36933 * 120.00157 * 89.99724 * 8 7 6 11 11 H 1.07996 * 120.00059 * 22.36091 * 10 8 7 12 12 C 1.38813 * 119.99917 * 202.36132 * 10 8 7 13 13 N 1.31619 * 119.99964 * 11.81381 * 12 10 8 14 14 Si 1.86803 * 119.99916 * 191.81488 * 12 10 8 15 15 H 1.48501 * 109.47097 * 59.99791 * 14 12 10 16 16 H 1.48497 * 109.47160 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47201 * 300.00029 * 14 12 10 18 18 C 1.38333 * 120.13140 * 0.02562 * 6 5 4 19 19 Cl 1.73593 * 120.01056 * 179.97438 * 18 6 5 20 20 C 1.38665 * 119.98017 * 359.72390 * 18 6 5 21 21 O 1.36019 * 120.08185 * 180.27532 * 20 18 6 22 22 H 1.08995 * 109.47384 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47383 * 59.99117 * 1 2 3 24 24 H 1.09008 * 109.46735 * 299.99643 * 1 2 3 25 25 H 1.07998 * 119.99342 * 0.02562 * 4 3 2 26 26 H 1.08004 * 119.92046 * 179.97438 * 5 4 3 27 27 H 1.09004 * 109.47096 * 19.99688 * 7 6 5 28 28 H 1.09002 * 109.47016 * 139.99541 * 7 6 5 29 29 H 1.09001 * 109.47475 * 92.72216 * 9 8 7 30 30 H 1.09001 * 109.47284 * 212.72353 * 9 8 7 31 31 H 1.09006 * 109.47365 * 332.72381 * 9 8 7 32 32 H 0.97001 * 119.99937 * 180.02562 * 13 12 10 33 33 H 0.96698 * 114.00035 * 270.25314 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2930 2.3749 0.0005 5 6 1.9216 3.6060 0.0000 6 6 3.3021 3.6810 -0.0005 7 6 3.9822 5.0257 -0.0005 8 7 4.4161 5.3536 -1.3609 9 6 5.7481 4.9535 -1.8212 10 6 3.5767 6.0338 -2.2021 11 1 2.7767 6.6354 -1.7963 12 6 3.7539 5.9503 -3.5763 13 7 4.5674 5.0472 -4.0812 14 14 2.8378 7.1196 -4.7090 15 1 3.2123 8.5193 -4.3833 16 1 3.1983 6.8266 -6.1194 17 1 1.3750 6.9430 -4.5245 18 6 4.0604 2.5240 -0.0011 19 17 5.7935 2.6217 -0.0024 20 6 3.4356 1.2861 0.0047 21 8 4.1791 0.1471 0.0099 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 0.5138 0.8901 25 1 0.2144 2.3195 0.0014 26 1 1.3329 4.5115 0.0000 27 1 3.2846 5.7858 0.3513 28 1 4.8489 4.9945 0.6598 29 1 5.6857 3.9842 -2.3159 30 1 6.1281 5.6958 -2.5231 31 1 6.4217 4.8828 -0.9671 32 1 4.6916 4.9891 -5.0415 33 1 4.3973 -0.1842 -0.8720 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233400565.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:25 Heat of formation + Delta-G solvation = -51.112258 kcal Electronic energy + Delta-G solvation = -19056.852386 eV Core-core repulsion = 15916.519237 eV Total energy + Delta-G solvation = -3140.333149 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.39099 -39.10068 -38.17170 -37.18422 -36.72481 -33.47316 -31.25974 -30.87471 -28.56269 -27.85958 -26.77618 -23.73964 -23.50660 -21.96177 -19.51850 -18.70905 -18.59532 -17.66740 -16.91093 -16.81881 -16.08623 -15.96753 -15.55072 -15.33557 -15.08270 -14.89757 -14.18632 -13.55030 -13.51921 -13.12860 -12.96624 -12.81870 -12.70588 -12.55386 -12.28757 -12.18664 -12.02620 -11.87115 -11.76184 -11.60106 -11.28433 -10.57045 -9.59840 -9.09110 -8.73287 -7.78332 -5.25163 0.10556 0.31750 1.17196 1.48536 1.51388 1.57086 2.39318 2.47106 2.59029 3.18714 3.37208 3.88239 3.91022 4.02602 4.21078 4.38445 4.41514 4.44806 4.50121 4.74076 4.80073 4.92955 4.98331 5.08755 5.20601 5.39740 5.56569 5.57206 5.68590 5.80889 6.25250 6.35477 6.74024 7.18316 7.88927 8.35139 9.25078 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.007127 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.360838 B = 3927.753148 C = 4739.551376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.325 6.325 3 C 0.095 3.905 4 C -0.185 4.185 5 C -0.071 4.071 6 C -0.114 4.114 7 C 0.182 3.818 8 N -0.601 5.601 9 C 0.185 3.815 10 C -0.257 4.257 11 H 0.078 0.922 12 C -0.052 4.052 13 N -0.936 5.936 14 Si 0.966 3.034 15 H -0.279 1.279 16 H -0.300 1.300 17 H -0.274 1.274 18 C -0.030 4.030 19 Cl -0.056 7.056 20 C 0.060 3.940 21 O -0.486 6.486 22 H 0.122 0.878 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.165 0.835 26 H 0.148 0.852 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.007 0.993 30 H 0.013 0.987 31 H 0.022 0.978 32 H 0.245 0.755 33 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.287 -7.462 8.977 13.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.239 6.239 3 C 0.048 3.952 4 C -0.204 4.204 5 C -0.090 4.090 6 C -0.118 4.118 7 C 0.056 3.944 8 N -0.322 5.322 9 C 0.041 3.959 10 C -0.387 4.387 11 H 0.096 0.904 12 C -0.247 4.247 13 N -0.583 5.583 14 Si 0.795 3.205 15 H -0.205 1.205 16 H -0.226 1.226 17 H -0.199 1.199 18 C -0.058 4.058 19 Cl -0.027 7.027 20 C 0.014 3.986 21 O -0.296 6.296 22 H 0.140 0.860 23 H 0.081 0.919 24 H 0.088 0.912 25 H 0.182 0.818 26 H 0.165 0.835 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.025 0.975 30 H 0.031 0.969 31 H 0.040 0.960 32 H 0.055 0.945 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -7.009 -7.593 9.414 13.979 hybrid contribution -0.116 0.401 -1.614 1.668 sum -7.125 -7.192 7.800 12.780 Atomic orbital electron populations 1.23408 0.76246 1.05751 1.02410 1.86084 1.23523 1.25490 1.88793 1.19145 0.90683 0.85903 0.99434 1.21475 1.01498 0.90843 1.06556 1.21032 0.92848 0.98389 0.96725 1.20908 0.94533 0.96528 0.99835 1.20042 0.97316 0.90255 0.86826 1.44199 1.12936 1.64288 1.10813 1.20607 0.84081 0.97281 0.93981 1.19551 1.11338 1.20191 0.87623 0.90402 1.25777 1.00693 0.99621 0.98598 1.70255 1.41544 1.35609 1.10884 0.85358 0.78677 0.78983 0.77511 1.20483 1.22640 1.19923 1.21020 0.85421 0.93652 1.05716 1.98326 1.09386 1.98349 1.96600 1.17427 0.87228 0.85375 1.08583 1.84808 1.71707 1.38706 1.34412 0.85967 0.91946 0.91220 0.81777 0.83475 0.91021 0.91999 0.97508 0.96856 0.95975 0.94540 0.74672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.39 16 2 O -0.32 -9.10 10.28 -79.60 -0.82 -9.92 16 3 C 0.09 3.04 6.70 22.56 0.15 3.19 16 4 C -0.19 -5.36 9.04 22.35 0.20 -5.16 16 5 C -0.07 -2.34 9.66 22.27 0.22 -2.13 16 6 C -0.11 -4.37 5.47 -19.84 -0.11 -4.47 16 7 C 0.18 7.31 5.40 85.63 0.46 7.77 16 8 N -0.60 -29.68 2.91 -731.31 -2.13 -31.81 16 9 C 0.19 9.35 7.33 127.77 0.94 10.29 16 10 C -0.26 -13.63 9.67 84.03 0.81 -12.82 16 11 H 0.08 3.90 7.85 -2.91 -0.02 3.88 16 12 C -0.05 -2.86 5.11 84.86 0.43 -2.42 16 13 N -0.94 -55.29 10.62 21.65 0.23 -55.06 16 14 Si 0.97 44.34 29.57 68.60 2.03 46.37 16 15 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 16 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 18 C -0.03 -1.15 6.32 22.39 0.14 -1.01 16 19 Cl -0.06 -2.09 23.62 -2.72 -0.06 -2.16 16 20 C 0.06 2.16 6.71 22.58 0.15 2.31 16 21 O -0.49 -15.94 12.75 -79.88 -1.02 -16.96 16 22 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 1.00 7.66 -2.39 -0.02 0.98 16 24 H 0.07 1.00 7.66 -2.38 -0.02 0.98 16 25 H 0.16 3.48 6.30 -2.91 -0.02 3.46 16 26 H 0.15 4.30 8.03 -2.91 -0.02 4.27 16 27 H 0.07 2.63 7.89 -2.38 -0.02 2.61 16 28 H 0.06 2.35 7.08 -2.39 -0.02 2.34 16 29 H 0.01 0.36 6.97 -2.39 -0.02 0.35 16 30 H 0.01 0.71 7.10 -2.39 -0.02 0.69 16 31 H 0.02 0.98 6.74 -2.38 -0.02 0.97 16 32 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 33 H 0.40 10.33 9.06 -74.06 -0.67 9.66 16 Total: -1.00 -67.08 291.09 3.21 -63.87 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: 0.47 Total: 8.74 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: 4.51 Total: -3.07 kcal Atomic # 7 Polarization: -84.97 SS G_CDS: -1.90 Total: -86.87 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.84 Total: -26.88 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -2.09 SS G_CDS: -0.06 Total: -2.16 kcal Total: -67.08 3.21 -63.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233400565.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.754 kcal (2) G-P(sol) polarization free energy of solvation -67.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds