Wall clock time and date at job start Mon Mar 30 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38462 * 120.01849 * 2 1 4 4 F 1.35099 * 120.01594 * 359.97438 * 3 2 1 5 5 C 1.38440 * 119.95973 * 179.72400 * 3 2 1 6 6 C 1.38231 * 120.00318 * 0.25143 * 5 3 2 7 7 C 1.38204 * 120.03808 * 359.97438 * 6 5 3 8 8 C 1.50697 * 119.97991 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47089 * 254.88090 * 8 7 6 10 10 C 1.46904 * 110.99984 * 199.66251 * 9 8 7 11 11 C 1.46897 * 110.99961 * 75.70904 * 9 8 7 12 12 C 1.50697 * 109.47188 * 189.99833 * 11 9 8 13 13 H 1.07998 * 119.99986 * 0.02562 * 12 11 9 14 14 C 1.37879 * 120.00064 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00204 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47102 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47530 * 119.99715 * 16 14 12 19 19 H 1.48498 * 109.47003 * 240.00058 * 16 14 12 20 20 C 1.38299 * 120.01706 * 180.22798 * 2 1 3 21 21 Cl 1.73595 * 120.00093 * 0.02597 * 20 2 1 22 22 H 1.09000 * 109.47161 * 90.00263 * 1 2 3 23 23 H 1.09003 * 109.47108 * 210.00077 * 1 2 3 24 24 H 1.08997 * 109.46973 * 329.99987 * 1 2 3 25 25 H 1.08000 * 119.99873 * 180.27929 * 5 3 2 26 26 H 1.07999 * 119.98175 * 179.97438 * 6 5 3 27 27 H 1.08993 * 109.47173 * 14.88711 * 8 7 6 28 28 H 1.09006 * 109.46882 * 134.88410 * 8 7 6 29 29 H 1.09001 * 109.47059 * 64.80441 * 10 9 8 30 30 H 1.08999 * 109.46731 * 184.80388 * 10 9 8 31 31 H 1.08992 * 109.47175 * 304.80369 * 10 9 8 32 32 H 1.08996 * 109.47410 * 309.99931 * 11 9 8 33 33 H 1.08999 * 109.47480 * 69.99887 * 11 9 8 34 34 H 0.96996 * 119.99853 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1989 0.0000 4 9 1.5250 2.3693 -0.0005 5 6 3.5842 1.1975 0.0058 6 6 4.2742 -0.0003 0.0063 7 6 3.5828 -1.1970 0.0016 8 6 4.3363 -2.5020 0.0027 9 7 4.2739 -3.1046 -1.3355 10 6 4.5697 -4.5425 -1.2797 11 6 5.1794 -2.4167 -2.2654 12 6 4.9130 -2.8923 -3.6703 13 1 4.1473 -3.6314 -3.8541 14 6 5.6468 -2.3839 -4.7211 15 7 6.5789 -1.4835 -4.4973 16 14 5.3161 -2.9729 -6.4627 17 1 4.2253 -3.9805 -6.4457 18 1 4.9124 -1.8200 -7.3070 19 1 6.5480 -3.5871 -7.0198 20 6 2.1989 -1.1975 -0.0048 21 17 1.3314 -2.7011 -0.0114 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 4.1251 2.1322 0.0103 26 1 5.3541 -0.0010 0.0104 27 1 5.3769 -2.3205 0.2713 28 1 3.8869 -3.1804 0.7280 29 1 3.7928 -5.0513 -0.7089 30 1 4.6007 -4.9466 -2.2916 31 1 5.5348 -4.6965 -0.7972 32 1 5.0111 -1.3413 -2.2078 33 1 6.2125 -2.6375 -1.9969 34 1 7.0949 -1.1256 -5.2366 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236712687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:50 Heat of formation + Delta-G solvation = -30.342673 kcal Electronic energy + Delta-G solvation = -18652.005058 eV Core-core repulsion = 15524.945335 eV Total energy + Delta-G solvation = -3127.059723 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.79551 -39.32974 -36.41922 -36.08800 -32.96462 -32.41846 -30.80647 -27.37581 -27.08466 -26.07690 -23.78221 -22.42622 -21.09850 -19.93018 -17.52510 -16.79050 -16.31616 -15.63139 -15.25085 -14.71762 -14.46420 -14.28977 -13.84653 -13.49757 -13.33800 -13.25194 -13.06803 -12.34487 -12.19617 -11.95591 -11.53112 -11.44241 -11.17778 -11.06190 -10.97424 -10.79563 -10.64725 -10.47921 -10.37827 -9.86047 -9.18770 -8.54469 -8.42672 -8.29363 -7.25579 -6.02605 -4.02753 1.23587 1.26702 2.39497 3.31042 3.38694 3.43585 3.60606 4.40680 4.43872 4.76094 4.85893 4.92288 5.18214 5.33665 5.42933 5.54526 5.60615 5.64475 5.78256 5.92425 6.03934 6.14410 6.17824 6.24153 6.28252 6.35870 6.60191 6.74753 6.92739 7.28065 7.31767 7.80411 8.07825 8.19201 8.53890 9.04966 9.61186 11.08456 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.006198 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.795982 B = 4516.354570 C = 5034.569351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C 0.097 3.903 4 F -0.139 7.139 5 C -0.146 4.146 6 C -0.074 4.074 7 C -0.056 4.056 8 C 0.089 3.911 9 N -0.530 5.530 10 C 0.039 3.961 11 C 0.191 3.809 12 C -0.504 4.504 13 H 0.064 0.936 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.895 3.105 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.285 1.285 20 C 0.013 3.987 21 Cl -0.049 7.049 22 H 0.077 0.923 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.137 0.863 26 H 0.139 0.861 27 H 0.039 0.961 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.078 0.922 31 H 0.010 0.990 32 H 0.032 0.968 33 H -0.010 1.010 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.996 2.137 11.810 14.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.121 4.121 3 C 0.077 3.923 4 F -0.117 7.117 5 C -0.164 4.164 6 C -0.093 4.093 7 C -0.058 4.058 8 C -0.039 4.039 9 N -0.254 5.254 10 C -0.109 4.109 11 C 0.066 3.934 12 C -0.542 4.542 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.723 3.277 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.015 4.015 21 Cl -0.019 7.019 22 H 0.095 0.905 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.155 0.845 26 H 0.157 0.843 27 H 0.058 0.942 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.028 0.972 32 H 0.050 0.950 33 H 0.008 0.992 34 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.447 2.184 11.532 14.461 hybrid contribution 0.680 -0.111 -0.864 1.105 sum -7.767 2.074 10.669 13.359 Atomic orbital electron populations 1.20746 0.89705 1.03312 1.03247 1.19609 0.97288 0.90608 1.04597 1.17212 0.89811 0.80412 1.04833 1.91460 1.80476 1.45678 1.94106 1.21121 0.92031 0.99897 1.03401 1.20906 1.00520 0.90338 0.97495 1.19821 0.91591 0.96344 0.98025 1.20988 0.97097 0.92016 0.93791 1.62097 1.55509 1.02515 1.05312 1.22205 0.96997 0.89354 1.02356 1.19791 0.88572 0.94534 0.90516 1.21191 1.18542 1.23514 0.90983 0.91814 1.24969 0.95198 0.95213 0.99205 1.69960 1.22883 1.29350 1.31676 0.86483 0.78028 0.78644 0.84539 1.19654 1.21060 1.21144 1.20248 0.91580 0.86535 1.03101 1.98343 1.75995 1.31154 1.96439 0.90456 0.90553 0.91244 0.84481 0.84293 0.94236 0.90666 0.93564 0.90378 0.97181 0.94966 0.99237 0.93058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.43 36.01 0.34 -1.07 16 2 C -0.12 -1.81 5.89 -104.51 -0.62 -2.43 16 3 C 0.10 1.47 7.24 -39.42 -0.29 1.18 16 4 F -0.14 -2.03 16.48 2.25 0.04 -1.99 16 5 C -0.15 -2.14 10.03 -39.51 -0.40 -2.53 16 6 C -0.07 -1.17 8.99 -39.60 -0.36 -1.52 16 7 C -0.06 -0.95 4.82 -104.58 -0.50 -1.46 16 8 C 0.09 1.56 4.46 -4.98 -0.02 1.53 16 9 N -0.53 -11.10 4.56 -245.83 -1.12 -12.22 16 10 C 0.04 0.74 9.37 60.07 0.56 1.31 16 11 C 0.19 4.84 4.55 -4.98 -0.02 4.82 16 12 C -0.50 -14.03 8.39 -34.44 -0.29 -14.32 16 13 H 0.06 1.78 7.17 -52.49 -0.38 1.40 16 14 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 15 N -0.90 -26.48 13.29 55.43 0.74 -25.75 16 16 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 17 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 C 0.01 0.21 6.31 -39.50 -0.25 -0.04 16 21 Cl -0.05 -0.75 25.89 -51.86 -1.34 -2.09 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 23 H 0.08 0.87 6.91 -51.93 -0.36 0.51 16 24 H 0.07 0.77 7.64 -51.93 -0.40 0.37 16 25 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 26 H 0.14 2.04 8.00 -52.49 -0.42 1.62 16 27 H 0.04 0.67 7.81 -51.93 -0.41 0.27 16 28 H 0.08 1.17 7.39 -51.93 -0.38 0.79 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.08 1.61 6.67 -51.93 -0.35 1.26 16 31 H 0.01 0.18 8.13 -51.93 -0.42 -0.25 16 32 H 0.03 0.87 6.88 -51.93 -0.36 0.51 16 33 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 303.37 15.07 4.57 4.57 Total: -1.00 -29.65 303.37 -8.37 -38.02 By element: Atomic # 1 Polarization: 0.11 SS G_CDS: -4.29 Total: -4.18 kcal Atomic # 6 Polarization: -11.13 SS G_CDS: -1.94 Total: -13.06 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.38 Total: -37.97 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.04 Total: -1.99 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.34 Total: -2.09 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.65 -8.37 -38.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236712687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.675 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds