Wall clock time and date at job start Mon Mar 30 2020 01:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38462 * 120.01849 * 2 1 4 4 F 1.35099 * 120.01594 * 359.97438 * 3 2 1 5 5 C 1.38440 * 119.95973 * 179.72400 * 3 2 1 6 6 C 1.38231 * 120.00318 * 0.25143 * 5 3 2 7 7 C 1.38204 * 120.03808 * 359.97438 * 6 5 3 8 8 C 1.50697 * 119.97991 * 180.02562 * 7 6 5 9 9 N 1.46898 * 109.47089 * 254.88090 * 8 7 6 10 10 C 1.46904 * 110.99984 * 199.66251 * 9 8 7 11 11 C 1.46897 * 110.99961 * 75.70904 * 9 8 7 12 12 C 1.50697 * 109.47188 * 189.99833 * 11 9 8 13 13 H 1.07998 * 119.99986 * 0.02562 * 12 11 9 14 14 C 1.37879 * 120.00064 * 180.02562 * 12 11 9 15 15 N 1.31518 * 120.00028 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00204 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47102 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47530 * 119.99715 * 16 14 12 19 19 H 1.48498 * 109.47003 * 240.00058 * 16 14 12 20 20 C 1.38299 * 120.01706 * 180.22798 * 2 1 3 21 21 Cl 1.73595 * 120.00093 * 0.02597 * 20 2 1 22 22 H 1.09000 * 109.47161 * 90.00263 * 1 2 3 23 23 H 1.09003 * 109.47108 * 210.00077 * 1 2 3 24 24 H 1.08997 * 109.46973 * 329.99987 * 1 2 3 25 25 H 1.08000 * 119.99873 * 180.27929 * 5 3 2 26 26 H 1.07999 * 119.98175 * 179.97438 * 6 5 3 27 27 H 1.08993 * 109.47173 * 14.88711 * 8 7 6 28 28 H 1.09006 * 109.46882 * 134.88410 * 8 7 6 29 29 H 1.09001 * 109.47059 * 64.80441 * 10 9 8 30 30 H 1.08999 * 109.46731 * 184.80388 * 10 9 8 31 31 H 1.08992 * 109.47175 * 304.80369 * 10 9 8 32 32 H 1.08996 * 109.47410 * 309.99931 * 11 9 8 33 33 H 1.08999 * 109.47480 * 69.99887 * 11 9 8 34 34 H 0.96996 * 119.99853 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1998 1.1989 0.0000 4 9 1.5250 2.3693 -0.0005 5 6 3.5842 1.1975 0.0058 6 6 4.2742 -0.0003 0.0063 7 6 3.5828 -1.1970 0.0016 8 6 4.3363 -2.5020 0.0027 9 7 4.2739 -3.1046 -1.3355 10 6 4.5697 -4.5425 -1.2797 11 6 5.1794 -2.4167 -2.2654 12 6 4.9130 -2.8923 -3.6703 13 1 4.1473 -3.6314 -3.8541 14 6 5.6468 -2.3839 -4.7211 15 7 6.5789 -1.4835 -4.4973 16 14 5.3161 -2.9729 -6.4627 17 1 4.2253 -3.9805 -6.4457 18 1 4.9124 -1.8200 -7.3070 19 1 6.5480 -3.5871 -7.0198 20 6 2.1989 -1.1975 -0.0048 21 17 1.3314 -2.7011 -0.0114 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 4.1251 2.1322 0.0103 26 1 5.3541 -0.0010 0.0104 27 1 5.3769 -2.3205 0.2713 28 1 3.8869 -3.1804 0.7280 29 1 3.7928 -5.0513 -0.7089 30 1 4.6007 -4.9466 -2.2916 31 1 5.5348 -4.6965 -0.7972 32 1 5.0111 -1.3413 -2.2078 33 1 6.2125 -2.6375 -1.9969 34 1 7.0949 -1.1256 -5.2366 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236712687.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:50 Heat of formation + Delta-G solvation = -46.718497 kcal Electronic energy + Delta-G solvation = -18652.715167 eV Core-core repulsion = 15524.945335 eV Total energy + Delta-G solvation = -3127.769832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.96609 -40.57130 -38.02101 -37.30663 -34.75407 -33.88206 -32.14190 -29.34339 -28.23391 -27.44724 -25.62172 -23.68909 -22.57620 -21.42412 -18.72076 -18.51959 -17.91541 -16.82234 -16.80677 -16.35315 -15.98604 -15.66040 -15.39985 -14.74937 -14.59418 -14.56189 -14.42246 -13.96585 -13.56832 -13.35735 -13.08839 -12.93313 -12.69205 -12.55334 -12.47792 -12.33348 -12.20922 -12.12458 -11.82660 -11.57529 -11.23170 -10.58759 -9.71596 -9.54318 -8.95410 -8.17809 -6.25488 0.00648 0.06720 1.17116 1.39941 1.41517 1.53990 2.36063 2.43193 3.15538 3.21765 3.46010 3.65227 3.70640 3.86598 4.16035 4.36415 4.40761 4.57165 4.60897 4.68543 4.69824 4.80866 4.83687 5.06983 5.09928 5.14156 5.15467 5.24379 5.33891 5.39682 5.68811 5.74986 6.10246 6.37807 6.65545 6.90883 7.43333 8.93117 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.017935 B = 0.006198 C = 0.005560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.795982 B = 4516.354570 C = 5034.569351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.123 4.123 3 C 0.091 3.909 4 F -0.135 7.135 5 C -0.144 4.144 6 C -0.085 4.085 7 C -0.075 4.075 8 C 0.092 3.908 9 N -0.537 5.537 10 C 0.041 3.959 11 C 0.210 3.790 12 C -0.518 4.518 13 H 0.060 0.940 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.960 3.040 17 H -0.265 1.265 18 H -0.281 1.281 19 H -0.278 1.278 20 C 0.000 4.000 21 Cl -0.043 7.043 22 H 0.079 0.921 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.160 0.840 26 H 0.143 0.857 27 H 0.041 0.959 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.011 0.989 33 H -0.037 1.037 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 1.958 11.887 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.125 4.125 3 C 0.071 3.929 4 F -0.113 7.113 5 C -0.162 4.162 6 C -0.104 4.104 7 C -0.077 4.077 8 C -0.036 4.036 9 N -0.261 5.261 10 C -0.107 4.107 11 C 0.083 3.917 12 C -0.557 4.557 13 H 0.078 0.922 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.786 3.214 17 H -0.189 1.189 18 H -0.207 1.207 19 H -0.204 1.204 20 C -0.028 4.028 21 Cl -0.014 7.014 22 H 0.098 0.902 23 H 0.104 0.896 24 H 0.102 0.898 25 H 0.177 0.823 26 H 0.161 0.839 27 H 0.059 0.941 28 H 0.114 0.886 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.029 0.971 33 H -0.020 1.020 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.518 1.993 11.629 15.159 hybrid contribution 0.986 -0.036 -0.818 1.282 sum -8.532 1.957 10.811 13.910 Atomic orbital electron populations 1.20815 0.87846 1.04518 1.03708 1.19909 0.98756 0.90200 1.03590 1.17337 0.90080 0.80631 1.04847 1.91468 1.80394 1.45415 1.94070 1.21367 0.92149 1.00452 1.02265 1.21045 1.00907 0.90599 0.97833 1.19897 0.92126 0.96381 0.99278 1.21027 0.97611 0.92759 0.92174 1.61993 1.54011 1.03338 1.06713 1.22207 0.98482 0.88282 1.01714 1.19393 0.87833 0.93602 0.90831 1.21501 1.18340 1.23368 0.92446 0.92203 1.25802 0.94963 0.95309 1.03321 1.70072 1.23784 1.30441 1.32955 0.85462 0.78182 0.78253 0.79516 1.18926 1.20739 1.20395 1.20370 0.91518 0.87246 1.03625 1.98335 1.75771 1.30842 1.96458 0.90216 0.89638 0.89815 0.82250 0.83919 0.94108 0.88596 0.90599 0.92413 0.96530 0.97081 1.01972 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 9.43 71.24 0.67 -1.91 16 2 C -0.12 -3.56 5.89 -19.79 -0.12 -3.68 16 3 C 0.09 2.63 7.24 22.37 0.16 2.79 16 4 F -0.13 -3.71 16.48 44.97 0.74 -2.97 16 5 C -0.14 -4.06 10.03 22.32 0.22 -3.84 16 6 C -0.09 -2.66 8.99 22.26 0.20 -2.46 16 7 C -0.08 -2.52 4.82 -19.84 -0.10 -2.61 16 8 C 0.09 3.14 4.46 85.56 0.38 3.52 16 9 N -0.54 -22.29 4.56 -931.68 -4.25 -26.54 16 10 C 0.04 1.52 9.37 127.69 1.20 2.72 16 11 C 0.21 10.82 4.55 85.56 0.39 11.21 16 12 C -0.52 -29.08 8.39 25.60 0.21 -28.86 16 13 H 0.06 3.34 7.17 -2.91 -0.02 3.32 16 14 C 0.00 0.23 5.46 84.65 0.46 0.69 16 15 N -0.93 -55.43 13.29 21.45 0.28 -55.14 16 16 Si 0.96 44.44 29.54 68.60 2.03 46.46 16 17 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.00 0.00 6.31 22.32 0.14 0.14 16 21 Cl -0.04 -1.27 25.89 -2.72 -0.07 -1.34 16 22 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.08 1.79 6.91 -2.39 -0.02 1.77 16 24 H 0.08 1.67 7.64 -2.39 -0.02 1.65 16 25 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 26 H 0.14 4.23 8.00 -2.91 -0.02 4.21 16 27 H 0.04 1.38 7.81 -2.39 -0.02 1.36 16 28 H 0.10 2.84 7.39 -2.38 -0.02 2.82 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.06 2.36 6.67 -2.39 -0.02 2.34 16 31 H 0.02 0.58 8.13 -2.39 -0.02 0.56 16 32 H 0.01 0.62 6.88 -2.39 -0.02 0.60 16 33 H -0.04 -2.09 8.12 -2.39 -0.02 -2.11 16 34 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -62.33 303.37 3.66 -58.66 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: 1.10 Total: 3.16 kcal Atomic # 6 Polarization: -26.13 SS G_CDS: 3.83 Total: -22.30 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -3.96 Total: -81.68 kcal Atomic # 9 Polarization: -3.71 SS G_CDS: 0.74 Total: -2.97 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.07 Total: -1.34 kcal Total: -62.33 3.66 -58.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236712687.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.946 kcal (2) G-P(sol) polarization free energy of solvation -62.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds