Wall clock time and date at job start Mon Mar 30 2020 00:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35896 * 117.00047 * 2 1 4 4 C 1.38661 * 120.02012 * 179.97438 * 3 2 1 5 5 C 1.38631 * 119.91669 * 179.97438 * 4 3 2 6 6 O 1.35895 * 120.02056 * 180.02562 * 5 4 3 7 7 C 1.38771 * 119.95709 * 0.02562 * 5 4 3 8 8 C 1.50699 * 119.98006 * 180.02562 * 7 5 4 9 9 N 1.46499 * 109.47154 * 89.99889 * 8 7 5 10 10 C 1.46493 * 120.00219 * 90.00439 * 9 8 7 11 11 C 1.36939 * 119.99955 * 269.99680 * 9 8 7 12 12 H 1.08003 * 119.99614 * 24.59551 * 11 9 8 13 13 C 1.38811 * 120.00415 * 204.59696 * 11 9 8 14 14 N 1.31621 * 119.99371 * 12.61433 * 13 11 9 15 15 Si 1.86793 * 120.00246 * 192.61515 * 13 11 9 16 16 H 1.48497 * 109.47504 * 89.99509 * 15 13 11 17 17 H 1.48502 * 109.47035 * 209.99999 * 15 13 11 18 18 H 1.48508 * 109.46871 * 329.99694 * 15 13 11 19 19 C 1.38283 * 120.04032 * 359.97438 * 7 5 4 20 20 Cl 1.73597 * 119.95481 * 179.97438 * 19 7 5 21 21 C 1.38309 * 120.08426 * 359.72756 * 19 7 5 22 22 H 1.09007 * 109.47531 * 300.00136 * 1 2 3 23 23 H 1.09000 * 109.47307 * 60.00544 * 1 2 3 24 24 H 1.09007 * 109.47541 * 180.02562 * 1 2 3 25 25 H 1.07997 * 120.04417 * 359.97438 * 4 3 2 26 26 H 0.96704 * 113.99511 * 90.00285 * 6 5 4 27 27 H 1.09000 * 109.46873 * 210.00219 * 8 7 5 28 28 H 1.09002 * 109.46651 * 329.99397 * 8 7 5 29 29 H 1.08997 * 109.47721 * 85.14268 * 10 9 8 30 30 H 1.09000 * 109.47473 * 205.14825 * 10 9 8 31 31 H 1.09005 * 109.47031 * 325.14015 * 10 9 8 32 32 H 0.97000 * 119.99220 * 180.02562 * 14 13 11 33 33 H 1.08003 * 119.98419 * 180.29597 * 21 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4306 1.2839 0.0005 5 6 4.0578 2.5202 0.0000 6 8 5.4147 2.5943 0.0000 7 6 3.2990 3.6821 -0.0005 8 6 3.9802 5.0264 -0.0017 9 7 4.2005 5.4610 -1.3833 10 6 3.1790 6.2519 -2.0741 11 6 5.3613 5.1281 -2.0290 12 1 5.9217 4.2586 -1.7184 13 6 5.8179 5.9081 -3.0825 14 7 5.2858 7.0914 -3.3039 15 14 7.1871 5.2784 -4.1860 16 1 6.5998 4.5260 -5.3236 17 1 7.9724 6.4270 -4.7049 18 1 8.0780 4.3815 -3.4066 19 6 1.9182 3.6072 -0.0011 20 17 0.9712 5.0621 -0.0011 21 6 1.2907 2.3746 -0.0068 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5137 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 4.0198 0.3788 0.0014 26 1 5.8074 2.6153 -0.8835 27 1 3.3507 5.7531 0.5119 28 1 4.9384 4.9484 0.5120 29 1 3.3121 7.3067 -1.8338 30 1 3.2755 6.1094 -3.1504 31 1 2.1893 5.9279 -1.7521 32 1 5.6046 7.6363 -4.0403 33 1 0.2122 2.3180 -0.0120 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236804774.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:23 Heat of formation + Delta-G solvation = -52.790886 kcal Electronic energy + Delta-G solvation = -19020.772305 eV Core-core repulsion = 15880.366365 eV Total energy + Delta-G solvation = -3140.405940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.40162 -39.62162 -37.98372 -37.14666 -36.47254 -33.60778 -31.61147 -30.82211 -28.40327 -27.90480 -26.79409 -23.76247 -23.56857 -21.94336 -19.82773 -18.76045 -17.94185 -17.75481 -16.94954 -16.67721 -16.46971 -15.98243 -15.66302 -15.26397 -15.19021 -14.87147 -14.21877 -13.89883 -13.45827 -13.36760 -13.10190 -12.87686 -12.71312 -12.48819 -12.34703 -12.22134 -12.02257 -11.87512 -11.61938 -11.50953 -11.28259 -10.57319 -9.68511 -9.19331 -8.69793 -7.78916 -5.28110 0.05361 0.25066 1.08746 1.50319 1.50816 1.58987 2.22712 2.43483 2.57645 3.34887 3.41495 3.84982 3.91477 3.97825 4.04795 4.21268 4.42147 4.42625 4.57172 4.71813 4.77696 4.97584 4.99830 5.06888 5.13427 5.37346 5.39342 5.46420 5.65610 5.73442 6.31005 6.36734 6.74805 7.18843 7.88739 8.37127 9.25750 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020904 B = 0.006676 C = 0.005641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.138900 B = 4193.393729 C = 4962.786541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.323 6.323 3 C 0.148 3.852 4 C -0.182 4.182 5 C 0.163 3.837 6 O -0.496 6.496 7 C -0.155 4.155 8 C 0.189 3.811 9 N -0.602 5.602 10 C 0.171 3.829 11 C -0.256 4.256 12 H 0.083 0.917 13 C -0.055 4.055 14 N -0.941 5.941 15 Si 0.966 3.034 16 H -0.289 1.289 17 H -0.301 1.301 18 H -0.259 1.259 19 C 0.015 3.985 20 Cl -0.058 7.058 21 C -0.208 4.208 22 H 0.067 0.933 23 H 0.063 0.937 24 H 0.126 0.874 25 H 0.152 0.848 26 H 0.405 0.595 27 H 0.054 0.946 28 H 0.055 0.945 29 H -0.013 1.013 30 H 0.023 0.977 31 H 0.037 0.963 32 H 0.246 0.754 33 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.238 -13.038 6.894 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.236 6.236 3 C 0.102 3.898 4 C -0.201 4.201 5 C 0.117 3.883 6 O -0.310 6.310 7 C -0.159 4.159 8 C 0.063 3.937 9 N -0.324 5.324 10 C 0.026 3.974 11 C -0.385 4.385 12 H 0.100 0.900 13 C -0.249 4.249 14 N -0.588 5.588 15 Si 0.794 3.206 16 H -0.216 1.216 17 H -0.228 1.228 18 H -0.183 1.183 19 C -0.013 4.013 20 Cl -0.029 7.029 21 C -0.227 4.227 22 H 0.086 0.914 23 H 0.082 0.918 24 H 0.144 0.856 25 H 0.169 0.831 26 H 0.265 0.735 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.006 0.994 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -10.253 -12.964 7.373 18.098 hybrid contribution 0.580 0.602 -1.350 1.588 sum -9.672 -12.362 6.023 16.812 Atomic orbital electron populations 1.23434 0.76080 1.05994 1.02456 1.86068 1.23728 1.25348 1.88473 1.18443 0.91378 0.84394 0.95633 1.20766 0.92489 0.98264 1.08587 1.17767 0.83527 0.90315 0.96722 1.84672 1.15337 1.95886 1.35120 1.21029 0.92618 0.98670 1.03568 1.19609 0.97938 0.89739 0.86449 1.44045 1.17118 1.61849 1.09384 1.20692 0.89102 0.92225 0.95385 1.19635 1.00274 1.06310 1.12331 0.89956 1.25831 1.01090 0.95446 1.02582 1.70258 1.46052 1.10656 1.31810 0.85279 0.79170 0.77006 0.79102 1.21649 1.22849 1.18344 1.20366 0.90733 0.87825 1.02365 1.98342 1.71472 1.36714 1.96365 1.21174 1.01594 0.89647 1.10293 0.91407 0.91844 0.85605 0.83073 0.73502 0.92757 0.92643 0.99446 0.95797 0.94440 0.94503 0.82163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.20 9.81 113.37 1.11 1.31 16 2 O -0.32 -7.40 10.49 -92.38 -0.97 -8.37 16 3 C 0.15 4.03 6.68 22.49 0.15 4.18 16 4 C -0.18 -5.39 9.92 22.46 0.22 -5.16 16 5 C 0.16 5.60 6.67 22.49 0.15 5.75 16 6 O -0.50 -16.97 12.24 -92.37 -1.13 -18.10 16 7 C -0.15 -5.73 5.48 -19.73 -0.11 -5.84 16 8 C 0.19 8.06 5.20 85.63 0.45 8.50 16 9 N -0.60 -30.09 2.90 -731.32 -2.12 -32.21 16 10 C 0.17 8.68 9.01 127.77 1.15 9.83 16 11 C -0.26 -13.46 9.64 84.03 0.81 -12.65 16 12 H 0.08 3.96 5.58 -2.91 -0.02 3.94 16 13 C -0.05 -3.02 5.04 84.86 0.43 -2.59 16 14 N -0.94 -56.01 10.85 21.65 0.23 -55.78 16 15 Si 0.97 44.05 29.57 68.60 2.03 46.07 16 16 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 17 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 18 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 19 C 0.01 0.48 6.31 22.30 0.14 0.62 16 20 Cl -0.06 -1.84 24.58 -2.72 -0.07 -1.90 16 21 C -0.21 -5.64 8.82 22.41 0.20 -5.45 16 22 H 0.07 0.81 7.67 -2.38 -0.02 0.79 16 23 H 0.06 0.82 7.65 -2.39 -0.02 0.81 16 24 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 25 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 26 H 0.40 12.51 7.16 -74.05 -0.53 11.98 16 27 H 0.05 2.25 6.83 -2.39 -0.02 2.23 16 28 H 0.06 2.44 7.42 -2.39 -0.02 2.42 16 29 H -0.01 -0.71 7.85 -2.39 -0.02 -0.73 16 30 H 0.02 1.31 6.76 -2.39 -0.02 1.30 16 31 H 0.04 1.66 5.09 -2.38 -0.01 1.65 16 32 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 33 H 0.16 3.38 6.29 -2.91 -0.02 3.36 16 Total: -1.00 -64.91 287.36 3.30 -61.61 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.62 Total: 10.17 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: 4.70 Total: -1.49 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -1.89 Total: -87.99 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -2.10 Total: -26.47 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.07 Total: -1.90 kcal Total: -64.91 3.30 -61.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236804774.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.824 kcal (2) G-P(sol) polarization free energy of solvation -64.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds