Wall clock time and date at job start Mon Mar 30 2020 00:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35921 * 117.00375 * 2 1 4 4 C 1.38767 * 120.03086 * 0.02562 * 3 2 1 5 5 C 1.38168 * 120.06456 * 180.02562 * 4 3 2 6 6 C 1.38213 * 120.12128 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.96759 * 179.97438 * 6 5 4 8 8 N 1.46503 * 109.47414 * 260.02785 * 7 6 5 9 9 C 1.46503 * 119.99724 * 270.00125 * 8 7 6 10 10 C 1.36931 * 120.00233 * 89.99839 * 8 7 6 11 11 H 1.07999 * 119.99982 * 20.37446 * 10 8 7 12 12 C 1.38821 * 119.99948 * 200.37823 * 10 8 7 13 13 N 1.31623 * 119.99800 * 14.96719 * 12 10 8 14 14 Si 1.86800 * 119.99802 * 194.96722 * 12 10 8 15 15 H 1.48504 * 109.47075 * 85.00518 * 14 12 10 16 16 H 1.48499 * 109.46740 * 205.00063 * 14 12 10 17 17 H 1.48492 * 109.47022 * 325.00311 * 14 12 10 18 18 C 1.38722 * 120.06404 * 359.97438 * 6 5 4 19 19 O 1.35926 * 120.03351 * 179.97438 * 18 6 5 20 20 C 1.38691 * 120.03113 * 180.25108 * 3 2 1 21 21 Cl 1.73598 * 120.06320 * 0.02753 * 20 3 2 22 22 H 1.09006 * 109.47088 * 300.00251 * 1 2 3 23 23 H 1.09005 * 109.47372 * 59.99646 * 1 2 3 24 24 H 1.09000 * 109.47659 * 179.97438 * 1 2 3 25 25 H 1.07997 * 119.96754 * 359.97438 * 4 3 2 26 26 H 1.08001 * 119.93876 * 179.97438 * 5 4 3 27 27 H 1.09003 * 109.47689 * 20.02382 * 7 6 5 28 28 H 1.09000 * 109.47504 * 140.02463 * 7 6 5 29 29 H 1.09001 * 109.47056 * 95.07579 * 9 8 7 30 30 H 1.08998 * 109.46854 * 215.08229 * 9 8 7 31 31 H 1.09007 * 109.47274 * 335.07715 * 9 8 7 32 32 H 0.97000 * 119.99550 * 180.02562 * 13 12 10 33 33 H 0.96705 * 113.99797 * 89.99874 * 19 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2910 2.3753 0.0005 5 6 1.9176 3.6067 0.0000 6 6 3.2977 3.6827 -0.0016 7 6 3.9775 5.0275 -0.0028 8 7 4.4098 5.3551 -1.3637 9 6 5.7413 4.9552 -1.8255 10 6 3.5692 6.0350 -2.2041 11 1 2.7501 6.6106 -1.7990 12 6 3.7699 5.9844 -3.5768 13 7 4.5630 5.0693 -4.0926 14 14 2.9144 7.2149 -4.6918 15 1 3.7193 8.4609 -4.7636 16 1 2.7751 6.6365 -6.0524 17 1 1.5689 7.5256 -4.1457 18 6 4.0576 2.5221 -0.0021 19 8 5.4147 2.5975 -0.0043 20 6 3.4311 1.2843 -0.0053 21 17 4.3788 -0.1701 -0.0126 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 0.2125 2.3188 0.0005 26 1 1.3280 4.5115 0.0000 27 1 3.2802 5.7876 0.3497 28 1 4.8450 4.9968 0.6565 29 1 5.6718 4.0058 -2.3565 30 1 6.1378 5.7181 -2.4955 31 1 6.4052 4.8442 -0.9681 32 1 4.7035 5.0342 -5.0517 33 1 5.8088 2.6198 0.8786 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236811270.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:29 Heat of formation + Delta-G solvation = -31.079322 kcal Electronic energy + Delta-G solvation = -19019.201408 eV Core-core repulsion = 15879.736952 eV Total energy + Delta-G solvation = -3139.464456 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.076 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.03234 -38.30877 -36.10945 -35.77174 -35.07805 -31.67765 -30.08470 -29.19962 -27.37290 -25.82538 -25.20438 -22.32991 -21.85733 -20.29927 -18.53773 -16.84802 -16.70455 -16.21690 -15.67257 -15.53831 -14.82187 -14.37671 -13.98176 -13.68291 -13.45286 -13.02729 -12.63523 -12.40652 -12.27530 -11.40106 -11.26323 -11.24098 -11.12499 -10.91474 -10.68273 -10.59136 -10.48498 -10.22242 -10.07617 -9.93255 -9.81843 -8.52728 -8.22241 -7.71725 -6.75919 -5.70539 -3.12822 1.49398 1.70078 2.56523 3.33075 3.38491 3.44026 3.45858 3.92922 4.51970 4.64487 5.02389 5.17007 5.18766 5.34138 5.41372 5.47515 5.65684 5.76254 5.81649 5.91872 6.25675 6.39452 6.50772 6.67190 6.90313 6.94882 7.06247 7.48123 7.48860 7.79333 7.95759 8.05480 8.39534 9.24151 9.87644 10.36578 11.32764 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.020768 B = 0.006353 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.885312 B = 4406.439919 C = 4965.533525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.124 3.876 4 C -0.206 4.206 5 C -0.054 4.054 6 C -0.126 4.126 7 C 0.191 3.809 8 N -0.584 5.584 9 C 0.171 3.829 10 C -0.256 4.256 11 H 0.070 0.930 12 C 0.003 3.997 13 N -0.897 5.897 14 Si 0.904 3.096 15 H -0.287 1.287 16 H -0.292 1.292 17 H -0.280 1.280 18 C 0.160 3.840 19 O -0.470 6.470 20 C -0.095 4.095 21 Cl -0.064 7.064 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.096 0.904 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.033 0.967 30 H 0.038 0.962 31 H 0.002 0.998 32 H 0.253 0.747 33 H 0.380 0.620 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -7.206 11.395 14.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.225 6.225 3 C 0.078 3.922 4 C -0.225 4.225 5 C -0.074 4.074 6 C -0.132 4.132 7 C 0.064 3.936 8 N -0.304 5.304 9 C 0.026 3.974 10 C -0.386 4.386 11 H 0.088 0.912 12 C -0.197 4.197 13 N -0.541 5.541 14 Si 0.734 3.266 15 H -0.214 1.214 16 H -0.218 1.218 17 H -0.206 1.206 18 C 0.113 3.887 19 O -0.278 6.278 20 C -0.123 4.123 21 Cl -0.036 7.036 22 H 0.072 0.928 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.051 0.949 30 H 0.057 0.943 31 H 0.021 0.979 32 H 0.063 0.937 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.878 -7.517 10.560 13.849 hybrid contribution -0.703 0.378 -0.499 0.941 sum -5.581 -7.139 10.061 13.540 Atomic orbital electron populations 1.23016 0.78702 1.03540 1.01346 1.86091 1.20994 1.26343 1.89028 1.18314 0.89984 0.84829 0.99094 1.21095 0.99614 0.91832 1.09988 1.20766 0.93899 0.96772 0.95923 1.21489 0.93769 0.97846 1.00052 1.19801 0.96022 0.88981 0.88808 1.44192 1.13159 1.63214 1.09861 1.20758 0.83003 0.99485 0.94114 1.19231 1.10786 1.21210 0.87374 0.91241 1.25039 0.99637 0.97985 0.96996 1.70125 1.40216 1.32603 1.11146 0.86288 0.79187 0.80978 0.80163 1.21374 1.21786 1.20580 1.17647 0.83601 0.88997 0.98432 1.85003 1.15020 1.95769 1.32021 1.20537 0.89013 0.87935 1.14773 1.98314 1.72066 1.35940 1.97248 0.92798 0.92634 0.88522 0.85309 0.85297 0.92785 0.93334 0.94890 0.94340 0.97949 0.93686 0.76469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.79 9.95 -19.49 -0.19 -4.98 16 3 C 0.12 2.12 6.68 -39.22 -0.26 1.86 16 4 C -0.21 -3.29 9.04 -39.41 -0.36 -3.64 16 5 C -0.05 -0.95 9.66 -39.62 -0.38 -1.33 16 6 C -0.13 -2.43 5.48 -104.46 -0.57 -3.00 16 7 C 0.19 3.83 5.50 -5.20 -0.03 3.81 16 8 N -0.58 -14.64 2.91 -182.50 -0.53 -15.17 16 9 C 0.17 4.33 7.97 59.85 0.48 4.80 16 10 C -0.26 -6.98 9.68 -15.06 -0.15 -7.13 16 11 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 12 C 0.00 0.08 5.06 -17.43 -0.09 -0.01 16 13 N -0.90 -26.74 10.67 55.49 0.59 -26.15 16 14 Si 0.90 21.93 29.58 -169.99 -5.03 16.90 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 C 0.16 3.02 6.67 -39.22 -0.26 2.76 16 19 O -0.47 -8.31 10.91 -19.51 -0.21 -8.52 16 20 C -0.09 -1.74 6.34 -39.23 -0.25 -1.99 16 21 Cl -0.06 -1.09 28.05 -51.86 -1.45 -2.55 16 22 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 23 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 24 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.13 1.65 6.29 -52.49 -0.33 1.32 16 26 H 0.13 2.06 8.03 -52.49 -0.42 1.64 16 27 H 0.05 1.01 7.89 -51.93 -0.41 0.60 16 28 H 0.05 0.87 7.57 -51.93 -0.39 0.47 16 29 H 0.03 0.94 7.40 -51.93 -0.38 0.55 16 30 H 0.04 1.04 7.21 -51.93 -0.37 0.67 16 31 H 0.00 0.04 7.63 -51.93 -0.40 -0.35 16 32 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 33 H 0.38 4.65 9.06 45.56 0.41 5.07 16 LS Contribution 295.98 15.07 4.46 4.46 Total: -1.00 -32.78 295.98 -6.31 -39.09 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: -3.06 Total: -0.52 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -0.88 Total: -2.57 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.06 Total: -41.32 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.41 Total: -13.50 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.45 Total: -2.55 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -32.78 -6.31 -39.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236811270.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.009 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds