Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38250 * 119.97856 * 2 1 4 4 C 1.38187 * 120.03392 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99573 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46921 * 104.99725 * 5 4 3 7 7 C 1.46893 * 111.00243 * 293.95400 * 6 5 4 8 8 C 1.46906 * 110.99853 * 169.99766 * 6 5 4 9 9 C 1.50693 * 109.47155 * 190.00173 * 8 6 5 10 10 H 1.08002 * 120.00119 * 0.02562 * 9 8 6 11 11 C 1.37881 * 120.00394 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99538 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00401 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47263 * 89.99861 * 13 11 9 15 15 H 1.48503 * 109.47049 * 209.99560 * 13 11 9 16 16 H 1.48500 * 109.47231 * 329.99846 * 13 11 9 17 17 C 1.38486 * 120.00492 * 0.25476 * 4 3 2 18 18 F 1.35093 * 120.02092 * 179.72725 * 17 4 3 19 19 C 1.38421 * 119.95589 * 359.49257 * 17 4 3 20 20 C 1.38333 * 119.96562 * 0.50671 * 19 17 4 21 21 Cl 1.73598 * 120.00234 * 179.76434 * 20 19 17 22 22 H 1.08999 * 109.47734 * 89.99570 * 1 2 3 23 23 H 1.09004 * 109.46694 * 210.00005 * 1 2 3 24 24 H 1.08999 * 109.46791 * 329.99329 * 1 2 3 25 25 H 1.07998 * 119.98264 * 0.05357 * 3 2 1 26 26 H 1.09002 * 109.47060 * 224.99906 * 5 4 3 27 27 H 1.09001 * 109.47380 * 344.99994 * 5 4 3 28 28 H 1.08999 * 109.47439 * 60.00146 * 7 6 5 29 29 H 1.08997 * 109.47257 * 180.02562 * 7 6 5 30 30 H 1.09006 * 109.46808 * 299.99830 * 7 6 5 31 31 H 1.09000 * 109.47257 * 310.00208 * 8 6 5 32 32 H 1.09006 * 109.46871 * 70.00245 * 8 6 5 33 33 H 0.96996 * 120.00250 * 180.02562 * 12 11 9 34 34 H 1.08003 * 120.01539 * 180.25627 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1975 0.0000 4 6 3.5797 1.1989 -0.0005 5 6 4.3318 2.5048 -0.0011 6 7 4.8873 2.7505 1.3365 7 6 3.8172 2.9640 2.3198 8 6 5.8202 3.8852 1.3188 9 6 6.5512 3.9550 2.6347 10 1 6.3440 3.2288 3.4068 11 6 7.4847 4.9459 2.8530 12 7 7.7375 5.8299 1.9126 13 14 8.3904 5.0329 4.4844 14 1 9.6332 4.2241 4.4044 15 1 8.7375 6.4456 4.7831 16 1 7.5205 4.4983 5.5627 17 6 4.2734 0.0003 -0.0064 18 9 5.6243 0.0012 -0.0125 19 6 3.5817 -1.1987 -0.0011 20 6 2.1983 -1.1983 -0.0006 21 17 1.3298 -2.7014 -0.0001 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.6572 2.1325 0.0009 26 1 5.1426 2.4568 -0.7281 27 1 3.6529 3.3150 -0.2670 28 1 3.1813 2.0798 2.3626 29 1 4.2561 3.1440 3.3011 30 1 3.2201 3.8271 2.0254 31 1 6.5391 3.7520 0.5104 32 1 5.2646 4.8099 1.1623 33 1 8.3945 6.5269 2.0660 34 1 4.1217 -2.1340 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238306841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = -31.837052 kcal Electronic energy + Delta-G solvation = -18326.284969 eV Core-core repulsion = 15199.160445 eV Total energy + Delta-G solvation = -3127.124524 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.58902 -39.53252 -36.97351 -36.18227 -32.93162 -32.40699 -31.27870 -27.32241 -27.00285 -26.36813 -23.95823 -22.63529 -21.14927 -19.94482 -17.58905 -16.82891 -16.39547 -15.57957 -15.19399 -14.80785 -14.52564 -14.17760 -14.01981 -13.88622 -13.71448 -13.63888 -12.73683 -12.48700 -12.27127 -12.07797 -11.94982 -11.38189 -11.35158 -11.14056 -11.04091 -10.92904 -10.88310 -10.61375 -10.47659 -9.87716 -9.25897 -8.92212 -8.44858 -8.38422 -7.30868 -6.03310 -4.04439 0.97954 1.08600 1.92929 3.32775 3.37357 3.38746 3.42614 4.38663 4.42506 4.55741 4.68663 4.80227 5.05913 5.12869 5.32824 5.42350 5.44018 5.46555 5.64942 5.76797 5.87647 6.02886 6.06165 6.15280 6.20551 6.26265 6.38890 6.71486 6.77721 7.24421 7.29087 7.77433 8.04546 8.15211 8.50576 9.02733 9.59641 11.07690 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033865 B = 0.004074 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.617857 B = 6871.629213 C = 7067.205021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.092 4.092 3 C -0.078 4.078 4 C -0.089 4.089 5 C 0.089 3.911 6 N -0.533 5.533 7 C 0.036 3.964 8 C 0.194 3.806 9 C -0.506 4.506 10 H 0.063 0.937 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.899 3.101 14 H -0.280 1.280 15 H -0.287 1.287 16 H -0.274 1.274 17 C 0.133 3.867 18 F -0.119 7.119 19 C -0.149 4.149 20 C -0.017 4.017 21 Cl -0.067 7.067 22 H 0.074 0.926 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.138 0.862 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.012 0.988 31 H 0.031 0.969 32 H -0.008 1.008 33 H 0.261 0.739 34 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.335 -12.612 -5.567 19.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.097 4.097 4 C -0.091 4.091 5 C -0.039 4.039 6 N -0.257 5.257 7 C -0.112 4.112 8 C 0.069 3.931 9 C -0.545 4.545 10 H 0.082 0.918 11 C -0.146 4.146 12 N -0.539 5.539 13 Si 0.727 3.273 14 H -0.206 1.206 15 H -0.213 1.213 16 H -0.199 1.199 17 C 0.113 3.887 18 F -0.097 7.097 19 C -0.169 4.169 20 C -0.044 4.044 21 Cl -0.038 7.038 22 H 0.092 0.908 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.156 0.844 26 H 0.101 0.899 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.010 0.990 33 H 0.071 0.929 34 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -13.967 -12.982 -5.457 19.834 hybrid contribution 0.381 0.687 0.602 0.990 sum -13.586 -12.295 -4.854 18.956 Atomic orbital electron populations 1.20826 0.90076 1.03476 1.02788 1.19709 0.96863 0.91088 1.01594 1.20806 0.92523 0.97452 0.98938 1.20222 0.93916 0.95289 0.99642 1.20998 0.97387 0.91026 0.94474 1.62168 1.15886 1.45105 1.02563 1.22245 0.93290 0.97595 0.98089 1.19757 0.89929 0.85077 0.98355 1.21140 1.21223 1.12314 0.99821 0.91836 1.24981 0.96957 0.95552 0.97085 1.69957 1.34253 1.16484 1.33192 0.86487 0.80117 0.77025 0.83719 1.20589 1.21324 1.19860 1.17237 0.77684 0.92837 1.00936 1.91572 1.27774 1.97171 1.93207 1.20913 0.92751 0.98239 1.04979 1.20355 0.91388 0.86741 1.05930 1.98349 1.76534 1.32004 1.96909 0.90773 0.90910 0.90995 0.84444 0.89888 0.94261 0.93705 0.90559 0.96966 0.95078 0.98974 0.92912 0.83955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.99 9.61 36.01 0.35 -0.65 16 2 C -0.09 -1.05 5.88 -104.58 -0.62 -1.66 16 3 C -0.08 -0.99 8.78 -39.60 -0.35 -1.33 16 4 C -0.09 -1.36 4.43 -104.55 -0.46 -1.83 16 5 C 0.09 1.59 4.78 -4.97 -0.02 1.57 16 6 N -0.53 -11.53 4.74 -245.82 -1.17 -12.69 16 7 C 0.04 0.71 9.16 60.06 0.55 1.26 16 8 C 0.19 5.04 4.72 -4.98 -0.02 5.01 16 9 C -0.51 -14.29 8.46 -34.44 -0.29 -14.58 16 10 H 0.06 1.78 7.12 -52.49 -0.37 1.41 16 11 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -26.72 13.29 55.43 0.74 -25.99 16 13 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 15 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 C 0.13 2.08 7.25 -39.42 -0.29 1.79 16 18 F -0.12 -2.13 16.75 2.25 0.04 -2.09 16 19 C -0.15 -1.96 9.81 -39.48 -0.39 -2.35 16 20 C -0.02 -0.21 6.31 -39.51 -0.25 -0.46 16 21 Cl -0.07 -0.70 27.29 -51.86 -1.42 -2.11 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.07 0.61 6.90 -51.93 -0.36 0.25 16 24 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.14 1.49 8.00 -52.49 -0.42 1.07 16 26 H 0.08 1.52 7.86 -51.93 -0.41 1.11 16 27 H 0.04 0.65 7.93 -51.93 -0.41 0.24 16 28 H 0.04 0.77 6.88 -51.93 -0.36 0.41 16 29 H 0.08 1.61 6.76 -51.93 -0.35 1.25 16 30 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.03 0.87 7.93 -51.93 -0.41 0.45 16 32 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 33 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 34 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 LS Contribution 305.82 15.07 4.61 4.61 Total: -1.00 -29.87 305.82 -8.44 -38.32 By element: Atomic # 1 Polarization: -0.69 SS G_CDS: -4.34 Total: -5.03 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.89 Total: -11.74 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: -0.43 Total: -38.68 kcal Atomic # 9 Polarization: -2.13 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.42 Total: -2.11 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.87 -8.44 -38.32 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238306841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.478 kcal (2) G-P(sol) polarization free energy of solvation -29.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds