Wall clock time and date at job start Mon Mar 30 2020 01:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38250 * 119.97856 * 2 1 4 4 C 1.38187 * 120.03392 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99573 * 179.97438 * 4 3 2 6 6 N 1.46901 * 109.46921 * 104.99725 * 5 4 3 7 7 C 1.46893 * 111.00243 * 293.95400 * 6 5 4 8 8 C 1.46906 * 110.99853 * 169.99766 * 6 5 4 9 9 C 1.50693 * 109.47155 * 190.00173 * 8 6 5 10 10 H 1.08002 * 120.00119 * 0.02562 * 9 8 6 11 11 C 1.37881 * 120.00394 * 180.02562 * 9 8 6 12 12 N 1.31519 * 119.99538 * 359.97438 * 11 9 8 13 13 Si 1.86792 * 120.00401 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47263 * 89.99861 * 13 11 9 15 15 H 1.48503 * 109.47049 * 209.99560 * 13 11 9 16 16 H 1.48500 * 109.47231 * 329.99846 * 13 11 9 17 17 C 1.38486 * 120.00492 * 0.25476 * 4 3 2 18 18 F 1.35093 * 120.02092 * 179.72725 * 17 4 3 19 19 C 1.38421 * 119.95589 * 359.49257 * 17 4 3 20 20 C 1.38333 * 119.96562 * 0.50671 * 19 17 4 21 21 Cl 1.73598 * 120.00234 * 179.76434 * 20 19 17 22 22 H 1.08999 * 109.47734 * 89.99570 * 1 2 3 23 23 H 1.09004 * 109.46694 * 210.00005 * 1 2 3 24 24 H 1.08999 * 109.46791 * 329.99329 * 1 2 3 25 25 H 1.07998 * 119.98264 * 0.05357 * 3 2 1 26 26 H 1.09002 * 109.47060 * 224.99906 * 5 4 3 27 27 H 1.09001 * 109.47380 * 344.99994 * 5 4 3 28 28 H 1.08999 * 109.47439 * 60.00146 * 7 6 5 29 29 H 1.08997 * 109.47257 * 180.02562 * 7 6 5 30 30 H 1.09006 * 109.46808 * 299.99830 * 7 6 5 31 31 H 1.09000 * 109.47257 * 310.00208 * 8 6 5 32 32 H 1.09006 * 109.46871 * 70.00245 * 8 6 5 33 33 H 0.96996 * 120.00250 * 180.02562 * 12 11 9 34 34 H 1.08003 * 120.01539 * 180.25627 * 19 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1975 0.0000 4 6 3.5797 1.1989 -0.0005 5 6 4.3318 2.5048 -0.0011 6 7 4.8873 2.7505 1.3365 7 6 3.8172 2.9640 2.3198 8 6 5.8202 3.8852 1.3188 9 6 6.5512 3.9550 2.6347 10 1 6.3440 3.2288 3.4068 11 6 7.4847 4.9459 2.8530 12 7 7.7375 5.8299 1.9126 13 14 8.3904 5.0329 4.4844 14 1 9.6332 4.2241 4.4044 15 1 8.7375 6.4456 4.7831 16 1 7.5205 4.4983 5.5627 17 6 4.2734 0.0003 -0.0064 18 9 5.6243 0.0012 -0.0125 19 6 3.5817 -1.1987 -0.0011 20 6 2.1983 -1.1983 -0.0006 21 17 1.3298 -2.7014 -0.0001 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8899 0.5139 25 1 1.6572 2.1325 0.0009 26 1 5.1426 2.4568 -0.7281 27 1 3.6529 3.3150 -0.2670 28 1 3.1813 2.0798 2.3626 29 1 4.2561 3.1440 3.3011 30 1 3.2201 3.8271 2.0254 31 1 6.5391 3.7520 0.5104 32 1 5.2646 4.8099 1.1623 33 1 8.3945 6.5269 2.0660 34 1 4.1217 -2.1340 -0.0015 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238306841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:04 Heat of formation + Delta-G solvation = -48.979452 kcal Electronic energy + Delta-G solvation = -18327.028319 eV Core-core repulsion = 15199.160445 eV Total energy + Delta-G solvation = -3127.867875 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.85276 -40.59901 -38.34769 -37.35177 -34.82599 -33.52101 -32.57904 -29.22770 -28.32162 -27.43168 -25.72334 -23.72384 -22.74885 -21.31430 -18.73074 -18.49381 -17.93725 -17.01826 -16.59858 -16.23883 -15.90174 -15.71817 -15.54841 -15.01356 -14.87509 -14.68729 -14.22038 -13.81164 -13.55520 -13.25548 -13.11102 -12.96355 -12.89199 -12.67513 -12.45439 -12.38608 -12.17601 -12.06869 -11.89275 -11.80075 -11.31344 -10.62373 -9.94983 -9.45532 -9.04710 -8.21195 -6.31131 -0.08021 0.06501 0.99324 1.40725 1.42557 1.53355 2.31311 2.41631 3.11449 3.29815 3.36427 3.62569 3.67011 3.80472 4.09676 4.33057 4.44546 4.50089 4.63214 4.65852 4.72374 4.80919 4.83845 4.91462 5.04204 5.15748 5.22821 5.25183 5.28006 5.32329 5.62942 5.71156 6.02771 6.29214 6.57072 6.84134 7.38338 8.89917 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033865 B = 0.004074 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.617857 B = 6871.629213 C = 7067.205021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.081 4.081 3 C -0.073 4.073 4 C -0.103 4.103 5 C 0.093 3.907 6 N -0.545 5.545 7 C 0.043 3.957 8 C 0.209 3.791 9 C -0.524 4.524 10 H 0.061 0.939 11 C 0.003 3.997 12 N -0.934 5.934 13 Si 0.969 3.031 14 H -0.275 1.275 15 H -0.280 1.280 16 H -0.264 1.264 17 C 0.104 3.896 18 F -0.142 7.142 19 C -0.146 4.146 20 C -0.019 4.019 21 Cl -0.047 7.047 22 H 0.090 0.910 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.159 0.841 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.055 0.945 30 H 0.020 0.980 31 H 0.001 0.999 32 H -0.030 1.030 33 H 0.265 0.735 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 -13.706 -4.815 21.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.082 4.082 3 C -0.092 4.092 4 C -0.105 4.105 5 C -0.035 4.035 6 N -0.270 5.270 7 C -0.105 4.105 8 C 0.083 3.917 9 C -0.562 4.562 10 H 0.079 0.921 11 C -0.195 4.195 12 N -0.574 5.574 13 Si 0.793 3.207 14 H -0.201 1.201 15 H -0.205 1.205 16 H -0.188 1.188 17 C 0.084 3.916 18 F -0.121 7.121 19 C -0.165 4.165 20 C -0.046 4.046 21 Cl -0.018 7.018 22 H 0.108 0.892 23 H 0.096 0.904 24 H 0.105 0.895 25 H 0.176 0.824 26 H 0.084 0.916 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.019 0.981 32 H -0.013 1.013 33 H 0.074 0.926 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -16.014 -14.098 -4.710 21.849 hybrid contribution 0.889 0.930 0.298 1.321 sum -15.126 -13.167 -4.412 20.534 Atomic orbital electron populations 1.20931 0.87597 1.04523 1.04104 1.20051 0.98510 0.90252 0.99411 1.21000 0.91242 0.98946 0.97984 1.20029 0.94935 0.93607 1.01905 1.20928 0.97358 0.93192 0.92026 1.62027 1.16941 1.42807 1.05186 1.22189 0.92770 0.99198 0.96349 1.19380 0.90043 0.85708 0.96551 1.21443 1.21806 1.12428 1.00549 0.92099 1.25890 0.97715 0.95024 1.00868 1.70078 1.34931 1.17121 1.35307 0.85390 0.78746 0.77322 0.79209 1.20077 1.20538 1.18818 1.17540 0.76933 0.94044 1.03061 1.91508 1.29537 1.97332 1.93711 1.21021 0.93413 0.97820 1.04294 1.20513 0.91139 0.87945 1.04991 1.98361 1.75917 1.30814 1.96738 0.89177 0.90411 0.89472 0.82359 0.91599 0.92903 0.91001 0.92583 0.96107 0.98051 1.01274 0.92632 0.82757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.52 9.61 71.24 0.68 -0.84 16 2 C -0.08 -1.61 5.88 -19.84 -0.12 -1.73 16 3 C -0.07 -1.66 8.78 22.26 0.20 -1.47 16 4 C -0.10 -3.09 4.43 -19.82 -0.09 -3.18 16 5 C 0.09 3.36 4.78 85.56 0.41 3.77 16 6 N -0.55 -24.08 4.74 -931.65 -4.42 -28.50 16 7 C 0.04 1.65 9.16 127.69 1.17 2.82 16 8 C 0.21 11.34 4.72 85.55 0.40 11.74 16 9 C -0.52 -30.25 8.46 25.60 0.22 -30.03 16 10 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 11 C 0.00 0.18 5.46 84.66 0.46 0.64 16 12 N -0.93 -56.65 13.29 21.45 0.28 -56.36 16 13 Si 0.97 44.83 29.54 68.60 2.03 46.85 16 14 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 15 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 C 0.10 3.25 7.25 22.37 0.16 3.41 16 18 F -0.14 -5.29 16.75 44.97 0.75 -4.54 16 19 C -0.15 -3.67 9.81 22.34 0.22 -3.45 16 20 C -0.02 -0.41 6.31 22.32 0.14 -0.27 16 21 Cl -0.05 -0.85 27.29 -2.72 -0.07 -0.93 16 22 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 23 H 0.08 0.99 6.90 -2.39 -0.02 0.97 16 24 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 25 H 0.16 2.90 8.00 -2.91 -0.02 2.88 16 26 H 0.07 2.56 7.86 -2.39 -0.02 2.54 16 27 H 0.05 1.75 7.93 -2.39 -0.02 1.73 16 28 H 0.07 2.35 6.88 -2.39 -0.02 2.33 16 29 H 0.06 2.36 6.76 -2.39 -0.02 2.34 16 30 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.00 0.08 7.93 -2.39 -0.02 0.06 16 32 H -0.03 -1.75 8.12 -2.38 -0.02 -1.77 16 33 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -65.38 305.82 3.53 -61.85 By element: Atomic # 1 Polarization: -0.89 SS G_CDS: 1.10 Total: 0.21 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: 3.86 Total: -18.58 kcal Atomic # 7 Polarization: -80.73 SS G_CDS: -4.13 Total: -84.87 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.75 Total: -4.54 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -0.07 Total: -0.93 kcal Total: -65.38 3.53 -61.85 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238306841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.868 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds