Wall clock time and date at job start Mon Mar 30 2020 01:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38459 * 120.01909 * 2 1 4 4 F 1.35103 * 120.01808 * 359.97438 * 3 2 1 5 5 C 1.38441 * 119.96512 * 180.02562 * 3 2 1 6 6 C 1.50703 * 120.00125 * 180.02562 * 5 3 2 7 7 N 1.46891 * 109.47190 * 80.02341 * 6 5 3 8 8 C 1.46900 * 111.00100 * 293.95043 * 7 6 5 9 9 C 1.46900 * 111.00306 * 170.00042 * 7 6 5 10 10 C 1.50700 * 109.47683 * 189.99829 * 9 7 6 11 11 H 1.08001 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37878 * 120.00193 * 179.97438 * 10 9 7 13 13 N 1.31517 * 120.00139 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99862 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47219 * 60.00080 * 14 12 10 16 16 H 1.48504 * 109.46807 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47221 * 300.00066 * 14 12 10 18 18 C 1.38223 * 120.00050 * 0.02562 * 5 3 2 19 19 C 1.38209 * 120.03826 * 359.97438 * 18 5 3 20 20 C 1.38289 * 120.02254 * 180.27751 * 2 1 3 21 21 Cl 1.73599 * 119.99841 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.47418 * 89.99626 * 1 2 3 23 23 H 1.08994 * 109.46925 * 209.99888 * 1 2 3 24 24 H 1.09004 * 109.47255 * 329.99318 * 1 2 3 25 25 H 1.09006 * 109.46957 * 200.01979 * 6 5 3 26 26 H 1.09003 * 109.46974 * 320.01843 * 6 5 3 27 27 H 1.09005 * 109.47013 * 60.00297 * 8 7 6 28 28 H 1.09003 * 109.47714 * 180.02562 * 8 7 6 29 29 H 1.09003 * 109.47140 * 300.00304 * 8 7 6 30 30 H 1.08999 * 109.46941 * 309.99931 * 9 7 6 31 31 H 1.09007 * 109.47069 * 69.99625 * 9 7 6 32 32 H 0.96997 * 120.00137 * 180.02562 * 13 12 10 33 33 H 1.08007 * 119.98402 * 179.97438 * 18 5 3 34 34 H 1.08002 * 119.97964 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1989 0.0000 4 9 1.5249 2.3693 -0.0005 5 6 3.5841 1.1976 -0.0005 6 6 4.3389 2.5020 0.0000 7 7 4.3770 3.0450 1.3644 8 6 3.0315 3.4197 1.8196 9 6 5.2987 4.1855 1.4515 10 6 5.5005 4.5591 2.8975 11 1 4.9943 4.0050 3.6740 12 6 6.3314 5.6083 3.2290 13 7 6.9482 6.2828 2.2833 14 14 6.5809 6.0717 5.0212 15 1 7.1527 4.9152 5.7566 16 1 7.5138 7.2238 5.1093 17 1 5.2753 6.4442 5.6226 18 6 4.2741 -0.0001 -0.0016 19 6 3.5827 -1.1969 -0.0016 20 6 2.1989 -1.1973 -0.0058 21 17 1.3315 -2.7010 -0.0138 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8899 0.5140 25 1 5.3565 2.3330 -0.3523 26 1 3.8390 3.2113 -0.6596 27 1 2.3871 2.5405 1.8113 28 1 3.0885 3.8192 2.8322 29 1 2.6203 4.1778 1.1530 30 1 6.2570 3.9128 1.0096 31 1 4.8783 5.0345 0.9122 32 1 7.5330 7.0207 2.5165 33 1 5.3542 -0.0008 -0.0024 34 1 4.1228 -2.1321 -0.0029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238513910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:39 Heat of formation + Delta-G solvation = -26.507272 kcal Electronic energy + Delta-G solvation = -18484.606413 eV Core-core repulsion = 15357.713006 eV Total energy + Delta-G solvation = -3126.893408 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.94136 -39.43278 -36.97385 -36.18347 -33.21303 -32.43874 -30.83781 -27.36278 -27.22687 -26.45375 -24.01582 -22.19196 -21.31712 -20.03110 -17.67238 -16.94830 -16.40679 -16.07146 -15.46894 -14.80265 -14.46479 -14.17544 -13.86411 -13.72199 -13.57609 -13.49548 -12.89881 -12.56957 -12.38648 -11.94344 -11.75667 -11.56893 -11.35418 -11.24298 -11.02447 -10.92025 -10.74609 -10.65764 -10.38970 -9.88885 -9.26724 -8.75332 -8.60272 -8.43002 -7.29791 -6.03906 -4.05285 0.97540 1.06504 1.92713 3.33549 3.37184 3.38043 3.41397 4.26891 4.42178 4.55071 4.67008 4.79863 5.11834 5.15729 5.32247 5.42091 5.42396 5.44901 5.62898 5.82739 5.98923 6.03193 6.05583 6.08771 6.18963 6.32709 6.47998 6.72610 6.79344 7.22902 7.30648 7.76514 8.02874 8.14711 8.50127 9.01707 9.58810 11.07005 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.004085 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.787294 B = 6852.571662 C = 6994.131673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.115 4.115 3 C 0.114 3.886 4 F -0.126 7.126 5 C -0.082 4.082 6 C 0.087 3.913 7 N -0.533 5.533 8 C 0.032 3.968 9 C 0.193 3.807 10 C -0.508 4.508 11 H 0.063 0.937 12 C 0.056 3.944 13 N -0.899 5.899 14 Si 0.899 3.101 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.277 1.277 18 C -0.071 4.071 19 C -0.116 4.116 20 C -0.021 4.021 21 Cl -0.067 7.067 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.047 0.953 28 H 0.073 0.927 29 H 0.016 0.984 30 H 0.031 0.969 31 H -0.007 1.007 32 H 0.262 0.738 33 H 0.144 0.856 34 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.243 -15.053 -6.898 19.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.116 4.116 3 C 0.094 3.906 4 F -0.105 7.105 5 C -0.084 4.084 6 C -0.041 4.041 7 N -0.257 5.257 8 C -0.116 4.116 9 C 0.068 3.932 10 C -0.546 4.546 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.539 5.539 14 Si 0.727 3.273 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.089 4.089 19 C -0.135 4.135 20 C -0.048 4.048 21 Cl -0.038 7.038 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.092 0.908 25 H 0.103 0.897 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.091 0.909 29 H 0.034 0.966 30 H 0.049 0.951 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.162 0.838 34 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -10.036 -15.327 -6.609 19.476 hybrid contribution -0.244 1.063 0.429 1.172 sum -10.280 -14.263 -6.181 18.637 Atomic orbital electron populations 1.20771 0.89545 1.03861 1.03064 1.19616 0.97382 0.90500 1.04141 1.17130 0.89443 0.80645 1.03407 1.91509 1.80188 1.45275 1.93508 1.20210 0.91550 0.97632 0.99020 1.21024 0.99264 0.90963 0.92829 1.62233 1.09279 1.36104 1.18131 1.22463 0.89770 0.98051 1.01331 1.19764 0.90500 0.85255 0.97671 1.21103 1.27128 1.14417 0.91972 0.91886 1.24979 0.95742 0.96194 0.97626 1.69946 1.30282 1.21385 1.32268 0.86546 0.77993 0.77902 0.84889 1.20136 1.21333 1.20268 1.20914 1.00717 0.89936 0.97378 1.21057 0.91639 0.99387 1.01448 1.20416 0.92143 0.86100 1.06117 1.98349 1.77028 1.31495 1.96913 0.90588 0.90495 0.90759 0.89668 0.94337 0.93449 0.90876 0.96570 0.95087 0.98967 0.92839 0.83847 0.84456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.43 36.00 0.34 -0.89 16 2 C -0.11 -1.48 5.89 -104.52 -0.62 -2.10 16 3 C 0.11 1.70 5.82 -39.43 -0.23 1.48 16 4 F -0.13 -2.02 13.03 2.25 0.03 -1.99 16 5 C -0.08 -1.27 5.16 -104.55 -0.54 -1.81 16 6 C 0.09 1.57 5.00 -4.98 -0.02 1.54 16 7 N -0.53 -11.63 4.74 -245.82 -1.17 -12.80 16 8 C 0.03 0.67 7.92 60.06 0.48 1.14 16 9 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 10 C -0.51 -14.29 8.46 -34.44 -0.29 -14.58 16 11 H 0.06 1.76 7.12 -52.49 -0.37 1.39 16 12 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 14 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 18 C -0.07 -0.91 9.67 -39.60 -0.38 -1.30 16 19 C -0.12 -1.34 9.83 -39.54 -0.39 -1.73 16 20 C -0.02 -0.25 6.31 -39.51 -0.25 -0.50 16 21 Cl -0.07 -0.69 27.30 -51.86 -1.42 -2.11 16 22 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.08 0.74 6.91 -51.93 -0.36 0.38 16 24 H 0.07 0.79 7.64 -51.93 -0.40 0.40 16 25 H 0.08 1.44 7.79 -51.93 -0.40 1.03 16 26 H 0.04 0.70 7.92 -51.93 -0.41 0.29 16 27 H 0.05 0.88 5.07 -51.93 -0.26 0.62 16 28 H 0.07 1.60 6.76 -51.93 -0.35 1.25 16 29 H 0.02 0.33 7.81 -51.93 -0.41 -0.08 16 30 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 31 H -0.01 -0.21 8.12 -51.93 -0.42 -0.63 16 32 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 33 H 0.14 1.63 8.04 -52.48 -0.42 1.21 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 298.52 15.07 4.50 4.50 Total: -1.00 -29.72 298.52 -8.57 -38.28 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -4.20 Total: -4.35 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.03 Total: -12.26 kcal Atomic # 7 Polarization: -38.27 SS G_CDS: -0.43 Total: -38.70 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.03 Total: -1.99 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.42 Total: -2.11 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.72 -8.57 -38.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238513910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.776 kcal (2) G-P(sol) polarization free energy of solvation -29.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds