Wall clock time and date at job start Mon Mar 30 2020 01:01:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38459 * 120.01909 * 2 1 4 4 F 1.35103 * 120.01808 * 359.97438 * 3 2 1 5 5 C 1.38441 * 119.96512 * 180.02562 * 3 2 1 6 6 C 1.50703 * 120.00125 * 180.02562 * 5 3 2 7 7 N 1.46891 * 109.47190 * 80.02341 * 6 5 3 8 8 C 1.46900 * 111.00100 * 293.95043 * 7 6 5 9 9 C 1.46900 * 111.00306 * 170.00042 * 7 6 5 10 10 C 1.50700 * 109.47683 * 189.99829 * 9 7 6 11 11 H 1.08001 * 119.99758 * 359.97438 * 10 9 7 12 12 C 1.37878 * 120.00193 * 179.97438 * 10 9 7 13 13 N 1.31517 * 120.00139 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99862 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47219 * 60.00080 * 14 12 10 16 16 H 1.48504 * 109.46807 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47221 * 300.00066 * 14 12 10 18 18 C 1.38223 * 120.00050 * 0.02562 * 5 3 2 19 19 C 1.38209 * 120.03826 * 359.97438 * 18 5 3 20 20 C 1.38289 * 120.02254 * 180.27751 * 2 1 3 21 21 Cl 1.73599 * 119.99841 * 0.02562 * 20 2 1 22 22 H 1.08997 * 109.47418 * 89.99626 * 1 2 3 23 23 H 1.08994 * 109.46925 * 209.99888 * 1 2 3 24 24 H 1.09004 * 109.47255 * 329.99318 * 1 2 3 25 25 H 1.09006 * 109.46957 * 200.01979 * 6 5 3 26 26 H 1.09003 * 109.46974 * 320.01843 * 6 5 3 27 27 H 1.09005 * 109.47013 * 60.00297 * 8 7 6 28 28 H 1.09003 * 109.47714 * 180.02562 * 8 7 6 29 29 H 1.09003 * 109.47140 * 300.00304 * 8 7 6 30 30 H 1.08999 * 109.46941 * 309.99931 * 9 7 6 31 31 H 1.09007 * 109.47069 * 69.99625 * 9 7 6 32 32 H 0.96997 * 120.00137 * 180.02562 * 13 12 10 33 33 H 1.08007 * 119.98402 * 179.97438 * 18 5 3 34 34 H 1.08002 * 119.97964 * 179.97438 * 19 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1989 0.0000 4 9 1.5249 2.3693 -0.0005 5 6 3.5841 1.1976 -0.0005 6 6 4.3389 2.5020 0.0000 7 7 4.3770 3.0450 1.3644 8 6 3.0315 3.4197 1.8196 9 6 5.2987 4.1855 1.4515 10 6 5.5005 4.5591 2.8975 11 1 4.9943 4.0050 3.6740 12 6 6.3314 5.6083 3.2290 13 7 6.9482 6.2828 2.2833 14 14 6.5809 6.0717 5.0212 15 1 7.1527 4.9152 5.7566 16 1 7.5138 7.2238 5.1093 17 1 5.2753 6.4442 5.6226 18 6 4.2741 -0.0001 -0.0016 19 6 3.5827 -1.1969 -0.0016 20 6 2.1989 -1.1973 -0.0058 21 17 1.3315 -2.7010 -0.0138 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8899 0.5138 24 1 -0.3634 0.8899 0.5140 25 1 5.3565 2.3330 -0.3523 26 1 3.8390 3.2113 -0.6596 27 1 2.3871 2.5405 1.8113 28 1 3.0885 3.8192 2.8322 29 1 2.6203 4.1778 1.1530 30 1 6.2570 3.9128 1.0096 31 1 4.8783 5.0345 0.9122 32 1 7.5330 7.0207 2.5165 33 1 5.3542 -0.0008 -0.0024 34 1 4.1228 -2.1321 -0.0029 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238513910.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:39 Heat of formation + Delta-G solvation = -43.519121 kcal Electronic energy + Delta-G solvation = -18485.344102 eV Core-core repulsion = 15357.713006 eV Total energy + Delta-G solvation = -3127.631097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -50.11670 -40.49705 -38.37494 -37.35027 -34.87822 -33.89682 -32.07343 -29.22161 -28.51171 -27.72734 -25.78383 -23.33342 -22.78596 -21.52008 -18.79852 -18.52357 -17.94939 -17.42129 -16.78283 -16.41434 -15.80498 -15.73108 -15.53253 -14.84227 -14.74121 -14.58409 -14.24344 -13.89263 -13.54078 -13.44077 -13.32285 -12.88201 -12.80235 -12.66142 -12.53784 -12.29541 -12.28147 -12.12925 -11.89859 -11.77250 -11.32326 -10.62066 -9.74522 -9.68272 -9.09314 -8.21083 -6.31309 -0.08046 0.05791 0.99998 1.41606 1.44621 1.52637 2.32542 2.42267 3.11507 3.20506 3.37048 3.58281 3.64031 3.79476 4.07556 4.31808 4.40565 4.47244 4.56050 4.63147 4.65938 4.67241 4.84282 5.01465 5.03188 5.09509 5.13928 5.14504 5.24651 5.33086 5.62236 5.69609 6.00620 6.22314 6.53298 6.83147 7.38136 8.89857 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.033614 B = 0.004085 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.787294 B = 6852.571662 C = 6994.131673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.116 4.116 3 C 0.093 3.907 4 F -0.139 7.139 5 C -0.103 4.103 6 C 0.090 3.910 7 N -0.538 5.538 8 C 0.042 3.958 9 C 0.207 3.793 10 C -0.526 4.526 11 H 0.061 0.939 12 C 0.004 3.996 13 N -0.934 5.934 14 Si 0.969 3.031 15 H -0.267 1.267 16 H -0.282 1.282 17 H -0.269 1.269 18 C -0.071 4.071 19 C -0.106 4.106 20 C -0.022 4.022 21 Cl -0.047 7.047 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.091 0.909 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.055 0.945 29 H 0.009 0.991 30 H 0.013 0.987 31 H -0.038 1.038 32 H 0.265 0.735 33 H 0.158 0.842 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 -17.091 -6.203 21.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.117 4.117 3 C 0.073 3.927 4 F -0.117 7.117 5 C -0.104 4.104 6 C -0.038 4.038 7 N -0.262 5.262 8 C -0.106 4.106 9 C 0.081 3.919 10 C -0.564 4.564 11 H 0.080 0.920 12 C -0.194 4.194 13 N -0.574 5.574 14 Si 0.793 3.207 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.194 1.194 18 C -0.089 4.089 19 C -0.124 4.124 20 C -0.049 4.049 21 Cl -0.018 7.018 22 H 0.107 0.893 23 H 0.107 0.893 24 H 0.089 0.911 25 H 0.109 0.891 26 H 0.048 0.952 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.031 0.969 31 H -0.020 1.020 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -10.590 -17.388 -5.924 21.203 hybrid contribution -0.129 1.575 0.133 1.586 sum -10.719 -15.813 -5.791 19.962 Atomic orbital electron populations 1.20838 0.88057 1.04261 1.04049 1.19833 0.98551 0.90039 1.03315 1.17335 0.89458 0.81005 1.04861 1.91468 1.80380 1.46124 1.93767 1.20038 0.91760 0.96958 1.01650 1.20998 1.00166 0.92208 0.90401 1.62142 1.09184 1.33911 1.20951 1.22374 0.89506 0.98751 0.99993 1.19430 0.90441 0.85648 0.96369 1.21404 1.27356 1.14830 0.92820 0.92035 1.25887 0.95225 0.95956 1.02348 1.70070 1.30847 1.21874 1.34594 0.85440 0.78213 0.77833 0.79164 1.19194 1.20699 1.19438 1.21106 1.01533 0.89556 0.96744 1.21361 0.91573 0.99928 0.99550 1.20592 0.92626 0.86635 1.05037 1.98361 1.76662 1.30011 1.96732 0.89266 0.89313 0.91110 0.89097 0.95233 0.91271 0.92577 0.97203 0.96917 1.02037 0.92595 0.82429 0.81497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 9.43 71.24 0.67 -1.55 16 2 C -0.12 -2.79 5.89 -19.80 -0.12 -2.90 16 3 C 0.09 2.73 5.82 22.37 0.13 2.86 16 4 F -0.14 -4.46 13.03 44.97 0.59 -3.88 16 5 C -0.10 -3.10 5.16 -19.82 -0.10 -3.20 16 6 C 0.09 3.29 5.00 85.56 0.43 3.72 16 7 N -0.54 -24.00 4.74 -931.63 -4.42 -28.42 16 8 C 0.04 1.77 7.92 127.69 1.01 2.78 16 9 C 0.21 11.18 4.72 85.56 0.40 11.59 16 10 C -0.53 -30.15 8.46 25.60 0.22 -29.93 16 11 H 0.06 3.47 7.12 -2.91 -0.02 3.45 16 12 C 0.00 0.23 5.46 84.65 0.46 0.69 16 13 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 14 Si 0.97 44.41 29.54 68.60 2.03 46.44 16 15 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 16 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C -0.07 -1.70 9.67 22.26 0.22 -1.49 16 19 C -0.11 -2.11 9.83 22.30 0.22 -1.90 16 20 C -0.02 -0.47 6.31 22.32 0.14 -0.33 16 21 Cl -0.05 -0.82 27.30 -2.72 -0.07 -0.90 16 22 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.09 1.48 6.91 -2.39 -0.02 1.46 16 24 H 0.07 1.42 7.64 -2.38 -0.02 1.40 16 25 H 0.09 3.14 7.79 -2.38 -0.02 3.12 16 26 H 0.03 1.12 7.92 -2.39 -0.02 1.10 16 27 H 0.07 2.59 5.07 -2.38 -0.01 2.58 16 28 H 0.06 2.51 6.76 -2.39 -0.02 2.49 16 29 H 0.01 0.41 7.81 -2.39 -0.02 0.39 16 30 H 0.01 0.72 7.93 -2.39 -0.02 0.70 16 31 H -0.04 -2.24 8.12 -2.38 -0.02 -2.26 16 32 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 33 H 0.16 3.27 8.04 -2.91 -0.02 3.24 16 34 H 0.17 2.34 8.06 -2.91 -0.02 2.31 16 Total: -1.00 -64.01 298.52 3.19 -60.82 By element: Atomic # 1 Polarization: 0.45 SS G_CDS: 1.11 Total: 1.55 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 3.68 Total: -19.65 kcal Atomic # 7 Polarization: -80.25 SS G_CDS: -4.14 Total: -84.39 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.59 Total: -3.88 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Atomic # 17 Polarization: -0.82 SS G_CDS: -0.07 Total: -0.90 kcal Total: -64.01 3.19 -60.82 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238513910.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.297 kcal (2) G-P(sol) polarization free energy of solvation -64.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds