Wall clock time and date at job start Mon Mar 30 2020 01:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38213 * 119.99392 * 2 1 4 4 C 1.38430 * 119.99076 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.01479 * 180.02562 * 4 3 2 6 6 C 1.38484 * 119.97434 * 0.02562 * 4 3 2 7 7 C 1.38166 * 119.98552 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.98993 * 180.02562 * 7 6 4 9 9 N 1.46900 * 109.46987 * 105.28932 * 8 7 6 10 10 C 1.46896 * 110.99952 * 287.99562 * 9 8 7 11 11 C 1.46908 * 110.99848 * 164.04660 * 9 8 7 12 12 C 1.50701 * 109.46968 * 189.99520 * 11 9 8 13 13 H 1.08005 * 119.99879 * 0.02562 * 12 11 9 14 14 C 1.37877 * 119.99877 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99748 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47402 * 59.99884 * 16 14 12 18 18 H 1.48510 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47070 * 299.99791 * 16 14 12 20 20 C 1.38332 * 119.99555 * 180.29354 * 2 1 3 21 21 Cl 1.73596 * 119.98771 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.47420 * 89.99892 * 1 2 3 23 23 H 1.09003 * 109.47268 * 210.00271 * 1 2 3 24 24 H 1.09004 * 109.47713 * 330.00386 * 1 2 3 25 25 H 1.08008 * 120.00462 * 0.04013 * 3 2 1 26 26 H 1.07996 * 120.00449 * 179.97438 * 6 4 3 27 27 H 1.09002 * 109.46851 * 225.28103 * 8 7 6 28 28 H 1.08994 * 109.47562 * 345.28746 * 8 7 6 29 29 H 1.09008 * 109.47319 * 62.07765 * 10 9 8 30 30 H 1.08998 * 109.47330 * 182.07822 * 10 9 8 31 31 H 1.09004 * 109.47333 * 302.07922 * 10 9 8 32 32 H 1.08996 * 109.47042 * 309.99545 * 11 9 8 33 33 H 1.09000 * 109.46873 * 69.99815 * 11 9 8 34 34 H 0.97001 * 119.99289 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1970 0.0000 4 6 3.5822 1.1970 -0.0005 5 9 4.2580 2.3667 0.0000 6 6 4.2740 -0.0027 -0.0016 7 6 3.5822 -1.1987 -0.0016 8 6 4.3350 -2.5043 -0.0022 9 7 4.2637 -3.1112 1.3337 10 6 5.0965 -2.3729 2.2924 11 6 4.6443 -4.5293 1.2886 12 6 4.3273 -5.1768 2.6120 13 1 3.8867 -4.5933 3.4069 14 6 4.5988 -6.5144 2.8076 15 7 5.1348 -7.2250 1.8395 16 14 4.2052 -7.3171 4.4478 17 1 2.7495 -7.2032 4.7180 18 1 4.5901 -8.7507 4.4022 19 1 4.9638 -6.6354 5.5271 20 6 2.1985 -1.1980 -0.0061 21 17 1.3301 -2.7011 -0.0132 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3635 0.8900 0.5138 25 1 1.6578 2.1324 0.0007 26 1 5.3539 -0.0033 -0.0024 27 1 3.8897 -3.1800 -0.7324 28 1 5.3774 -2.3226 -0.2635 29 1 4.7254 -1.3521 2.3855 30 1 5.0546 -2.8647 3.2643 31 1 6.1274 -2.3538 1.9390 32 1 4.0875 -5.0300 0.4965 33 1 5.7129 -4.6126 1.0901 34 1 5.3261 -8.1659 1.9773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238778540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:53 Heat of formation + Delta-G solvation = -31.156355 kcal Electronic energy + Delta-G solvation = -18409.136568 eV Core-core repulsion = 15282.041561 eV Total energy + Delta-G solvation = -3127.095007 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.93559 -39.53200 -36.51951 -36.03542 -33.24836 -32.27889 -30.66020 -27.38461 -27.08252 -26.66487 -24.02436 -22.04884 -21.22937 -20.09801 -16.99476 -16.84376 -16.47082 -16.22998 -15.70577 -14.93843 -14.32856 -14.15317 -13.98115 -13.71836 -13.61102 -13.36837 -12.62002 -12.47109 -12.18869 -11.93465 -11.89840 -11.41190 -11.31722 -11.07545 -10.95187 -10.86542 -10.66494 -10.48077 -10.28677 -9.84174 -9.25076 -8.84234 -8.42723 -8.35318 -7.27711 -6.01742 -4.02532 1.03071 1.11401 2.46580 3.34365 3.38256 3.40049 3.42950 4.13578 4.43632 4.57541 4.64137 4.97472 5.10616 5.21687 5.34468 5.39306 5.50715 5.54710 5.64024 5.76289 5.97459 6.03153 6.09455 6.18728 6.20536 6.28492 6.43730 6.73593 6.76155 7.27061 7.32275 7.79216 8.06874 8.17932 8.52883 9.04438 9.61276 11.09148 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.005129 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.461682 B = 5458.178000 C = 6038.493058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.054 4.054 3 C -0.154 4.154 4 C 0.100 3.900 5 F -0.141 7.141 6 C -0.147 4.147 7 C -0.022 4.022 8 C 0.086 3.914 9 N -0.527 5.527 10 C 0.036 3.964 11 C 0.196 3.804 12 C -0.504 4.504 13 H 0.063 0.937 14 C 0.056 3.944 15 N -0.899 5.899 16 Si 0.897 3.103 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.027 4.027 21 Cl -0.038 7.038 22 H 0.076 0.924 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.138 0.862 26 H 0.139 0.861 27 H 0.087 0.913 28 H 0.038 0.962 29 H 0.043 0.957 30 H 0.077 0.923 31 H 0.011 0.989 32 H 0.032 0.968 33 H -0.009 1.009 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 15.472 -5.474 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.055 4.055 3 C -0.173 4.173 4 C 0.081 3.919 5 F -0.119 7.119 6 C -0.167 4.167 7 C -0.024 4.024 8 C -0.043 4.043 9 N -0.251 5.251 10 C -0.113 4.113 11 C 0.071 3.929 12 C -0.543 4.543 13 H 0.081 0.919 14 C -0.145 4.145 15 N -0.539 5.539 16 Si 0.725 3.275 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.203 1.203 20 C -0.055 4.055 21 Cl -0.008 7.008 22 H 0.095 0.905 23 H 0.098 0.902 24 H 0.089 0.911 25 H 0.156 0.844 26 H 0.156 0.844 27 H 0.105 0.895 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.095 0.905 31 H 0.030 0.970 32 H 0.050 0.950 33 H 0.009 0.991 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.640 15.185 -5.352 17.416 hybrid contribution 0.851 -0.425 0.604 1.127 sum -5.789 14.760 -4.748 16.550 Atomic orbital electron populations 1.20875 0.89811 1.03787 1.02988 1.19556 0.96837 0.90596 0.98534 1.20820 0.92078 0.98633 1.05808 1.17616 0.90042 0.81156 1.03088 1.91488 1.80360 1.46102 1.93983 1.20991 1.00910 0.90193 1.04565 1.19751 0.91882 0.95611 0.95156 1.21093 0.96940 0.91508 0.94710 1.62108 1.54344 1.05104 1.03503 1.22266 0.93533 0.97147 0.98347 1.19739 0.94089 0.80826 0.98247 1.21096 1.40392 0.94253 0.98558 0.91900 1.24966 0.95390 0.97269 0.96917 1.69948 1.43709 1.08036 1.32205 0.86577 0.78871 0.78108 0.83942 1.20177 1.21395 1.20323 1.20704 0.92012 0.87783 1.04982 1.98397 1.75591 1.30501 1.96344 0.90515 0.90245 0.91096 0.84418 0.84366 0.89496 0.94387 0.93813 0.90458 0.97046 0.95038 0.99148 0.92909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 9.61 36.00 0.35 -0.81 16 2 C -0.05 -0.68 5.88 -104.60 -0.62 -1.30 16 3 C -0.15 -1.82 9.68 -39.52 -0.38 -2.20 16 4 C 0.10 1.31 7.30 -39.42 -0.29 1.02 16 5 F -0.14 -1.83 17.27 2.25 0.04 -1.79 16 6 C -0.15 -2.03 9.28 -39.52 -0.37 -2.40 16 7 C -0.02 -0.35 4.67 -104.60 -0.49 -0.84 16 8 C 0.09 1.52 4.44 -4.98 -0.02 1.50 16 9 N -0.53 -11.10 4.59 -245.82 -1.13 -12.23 16 10 C 0.04 0.69 9.22 60.06 0.55 1.25 16 11 C 0.20 5.00 4.71 -4.97 -0.02 4.97 16 12 C -0.50 -14.00 8.43 -34.44 -0.29 -14.29 16 13 H 0.06 1.74 7.14 -52.48 -0.37 1.36 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 16 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C -0.03 -0.41 6.31 -39.50 -0.25 -0.66 16 21 Cl -0.04 -0.61 25.89 -51.86 -1.34 -1.95 16 22 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 0.84 6.91 -51.93 -0.36 0.48 16 24 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 25 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 26 H 0.14 1.74 8.00 -52.49 -0.42 1.32 16 27 H 0.09 1.57 7.25 -51.93 -0.38 1.20 16 28 H 0.04 0.64 7.81 -51.93 -0.41 0.23 16 29 H 0.04 0.76 7.24 -51.92 -0.38 0.38 16 30 H 0.08 1.62 6.71 -51.93 -0.35 1.27 16 31 H 0.01 0.21 8.07 -51.93 -0.42 -0.21 16 32 H 0.03 0.86 7.86 -51.93 -0.41 0.45 16 33 H -0.01 -0.25 8.12 -51.93 -0.42 -0.68 16 34 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 304.61 15.07 4.59 4.59 Total: -1.00 -29.33 304.61 -8.36 -37.69 By element: Atomic # 1 Polarization: -0.52 SS G_CDS: -4.31 Total: -4.83 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.92 Total: -12.28 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: -0.39 Total: -38.04 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.34 Total: -1.95 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.33 -8.36 -37.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238778540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.529 kcal (2) G-P(sol) polarization free energy of solvation -29.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds