Wall clock time and date at job start Mon Mar 30 2020 01:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38213 * 119.99392 * 2 1 4 4 C 1.38430 * 119.99076 * 180.02562 * 3 2 1 5 5 F 1.35099 * 120.01479 * 180.02562 * 4 3 2 6 6 C 1.38484 * 119.97434 * 0.02562 * 4 3 2 7 7 C 1.38166 * 119.98552 * 359.97438 * 6 4 3 8 8 C 1.50699 * 119.98993 * 180.02562 * 7 6 4 9 9 N 1.46900 * 109.46987 * 105.28932 * 8 7 6 10 10 C 1.46896 * 110.99952 * 287.99562 * 9 8 7 11 11 C 1.46908 * 110.99848 * 164.04660 * 9 8 7 12 12 C 1.50701 * 109.46968 * 189.99520 * 11 9 8 13 13 H 1.08005 * 119.99879 * 0.02562 * 12 11 9 14 14 C 1.37877 * 119.99877 * 179.97438 * 12 11 9 15 15 N 1.31513 * 119.99814 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 119.99748 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47402 * 59.99884 * 16 14 12 18 18 H 1.48510 * 109.46908 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47070 * 299.99791 * 16 14 12 20 20 C 1.38332 * 119.99555 * 180.29354 * 2 1 3 21 21 Cl 1.73596 * 119.98771 * 359.97438 * 20 2 1 22 22 H 1.09001 * 109.47420 * 89.99892 * 1 2 3 23 23 H 1.09003 * 109.47268 * 210.00271 * 1 2 3 24 24 H 1.09004 * 109.47713 * 330.00386 * 1 2 3 25 25 H 1.08008 * 120.00462 * 0.04013 * 3 2 1 26 26 H 1.07996 * 120.00449 * 179.97438 * 6 4 3 27 27 H 1.09002 * 109.46851 * 225.28103 * 8 7 6 28 28 H 1.08994 * 109.47562 * 345.28746 * 8 7 6 29 29 H 1.09008 * 109.47319 * 62.07765 * 10 9 8 30 30 H 1.08998 * 109.47330 * 182.07822 * 10 9 8 31 31 H 1.09004 * 109.47333 * 302.07922 * 10 9 8 32 32 H 1.08996 * 109.47042 * 309.99545 * 11 9 8 33 33 H 1.09000 * 109.46873 * 69.99815 * 11 9 8 34 34 H 0.97001 * 119.99289 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1979 1.1970 0.0000 4 6 3.5822 1.1970 -0.0005 5 9 4.2580 2.3667 0.0000 6 6 4.2740 -0.0027 -0.0016 7 6 3.5822 -1.1987 -0.0016 8 6 4.3350 -2.5043 -0.0022 9 7 4.2637 -3.1112 1.3337 10 6 5.0965 -2.3729 2.2924 11 6 4.6443 -4.5293 1.2886 12 6 4.3273 -5.1768 2.6120 13 1 3.8867 -4.5933 3.4069 14 6 4.5988 -6.5144 2.8076 15 7 5.1348 -7.2250 1.8395 16 14 4.2052 -7.3171 4.4478 17 1 2.7495 -7.2032 4.7180 18 1 4.5901 -8.7507 4.4022 19 1 4.9638 -6.6354 5.5271 20 6 2.1985 -1.1980 -0.0061 21 17 1.3301 -2.7011 -0.0132 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3634 -0.8900 0.5139 24 1 -0.3635 0.8900 0.5138 25 1 1.6578 2.1324 0.0007 26 1 5.3539 -0.0033 -0.0024 27 1 3.8897 -3.1800 -0.7324 28 1 5.3774 -2.3226 -0.2635 29 1 4.7254 -1.3521 2.3855 30 1 5.0546 -2.8647 3.2643 31 1 6.1274 -2.3538 1.9390 32 1 4.0875 -5.0300 0.4965 33 1 5.7129 -4.6126 1.0901 34 1 5.3261 -8.1659 1.9773 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238778540.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:52 Heat of formation + Delta-G solvation = -47.539410 kcal Electronic energy + Delta-G solvation = -18409.846990 eV Core-core repulsion = 15282.041561 eV Total energy + Delta-G solvation = -3127.805430 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.94965 -40.64820 -38.11851 -37.21642 -34.90678 -33.81405 -31.83372 -29.24810 -28.14077 -28.05331 -25.78308 -23.28269 -22.59767 -21.56661 -18.53879 -17.93347 -17.88208 -17.50936 -16.89308 -16.64199 -15.95082 -15.73781 -15.40265 -14.80933 -14.67211 -14.51701 -14.04088 -13.73952 -13.65820 -13.26965 -13.16877 -12.86754 -12.81369 -12.60759 -12.48860 -12.43120 -12.21675 -12.07631 -11.87299 -11.46916 -11.26761 -10.59002 -9.89152 -9.45606 -9.01088 -8.17883 -6.26831 -0.03918 0.06958 1.31826 1.41947 1.44698 1.52444 2.32971 2.43456 3.08210 3.15066 3.41408 3.57955 3.66891 4.01185 4.16437 4.30015 4.43675 4.55437 4.57336 4.66928 4.70748 4.77603 4.81312 4.99353 5.06418 5.18084 5.20438 5.23886 5.32126 5.34385 5.66488 5.73866 6.06575 6.32519 6.60476 6.88350 7.42158 8.92892 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.024785 B = 0.005129 C = 0.004636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.461682 B = 5458.178000 C = 6038.493058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.051 4.051 3 C -0.140 4.140 4 C 0.099 3.901 5 F -0.139 7.139 6 C -0.148 4.148 7 C -0.039 4.039 8 C 0.090 3.910 9 N -0.531 5.531 10 C 0.042 3.958 11 C 0.213 3.787 12 C -0.518 4.518 13 H 0.061 0.939 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.965 3.035 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.268 1.268 20 C -0.043 4.043 21 Cl -0.058 7.058 22 H 0.092 0.908 23 H 0.068 0.932 24 H 0.096 0.904 25 H 0.171 0.829 26 H 0.147 0.853 27 H 0.075 0.925 28 H 0.045 0.955 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.016 0.984 32 H 0.005 0.995 33 H -0.036 1.036 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.157 17.516 -4.755 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.052 4.052 3 C -0.159 4.159 4 C 0.080 3.920 5 F -0.117 7.117 6 C -0.168 4.168 7 C -0.040 4.040 8 C -0.038 4.038 9 N -0.255 5.255 10 C -0.107 4.107 11 C 0.087 3.913 12 C -0.556 4.556 13 H 0.080 0.920 14 C -0.194 4.194 15 N -0.575 5.575 16 Si 0.790 3.210 17 H -0.195 1.195 18 H -0.209 1.209 19 H -0.193 1.193 20 C -0.070 4.070 21 Cl -0.029 7.029 22 H 0.110 0.890 23 H 0.087 0.913 24 H 0.114 0.886 25 H 0.189 0.811 26 H 0.165 0.835 27 H 0.093 0.907 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.034 0.966 32 H 0.023 0.977 33 H -0.019 1.019 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.631 17.258 -4.635 19.430 hybrid contribution 1.154 -0.937 0.315 1.519 sum -6.477 16.321 -4.320 18.082 Atomic orbital electron populations 1.20957 0.87760 1.04506 1.04186 1.19862 0.98321 0.89770 0.97244 1.21166 0.91624 0.99571 1.03552 1.17676 0.90597 0.80834 1.02884 1.91500 1.80450 1.45827 1.93937 1.21032 1.01456 0.89968 1.04317 1.19486 0.92085 0.94822 0.97639 1.21017 0.97764 0.92499 0.92527 1.61985 1.54576 1.03157 1.05804 1.22211 0.93741 0.97800 0.96913 1.19350 0.91801 0.83588 0.96561 1.21395 1.40223 0.94751 0.99278 0.92037 1.25843 0.95098 0.97899 1.00599 1.70075 1.44711 1.08370 1.34327 0.85502 0.78872 0.77122 0.79520 1.19538 1.20919 1.19271 1.20906 0.91945 0.87939 1.06247 1.98388 1.75940 1.32023 1.96540 0.88986 0.91330 0.88574 0.81124 0.83482 0.90708 0.93645 0.91381 0.92283 0.96591 0.97651 1.01872 0.92775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.97 9.61 71.23 0.68 -1.28 16 2 C -0.05 -1.15 5.88 -19.85 -0.12 -1.27 16 3 C -0.14 -2.79 9.68 22.31 0.22 -2.58 16 4 C 0.10 2.30 7.30 22.37 0.16 2.47 16 5 F -0.14 -3.18 17.27 44.97 0.78 -2.40 16 6 C -0.15 -3.83 9.28 22.31 0.21 -3.63 16 7 C -0.04 -1.17 4.67 -19.85 -0.09 -1.27 16 8 C 0.09 3.22 4.44 85.56 0.38 3.60 16 9 N -0.53 -22.78 4.59 -931.63 -4.28 -27.06 16 10 C 0.04 1.61 9.22 127.69 1.18 2.79 16 11 C 0.21 11.29 4.71 85.56 0.40 11.69 16 12 C -0.52 -29.31 8.43 25.60 0.22 -29.09 16 13 H 0.06 3.43 7.14 -2.91 -0.02 3.41 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 16 Si 0.96 44.50 29.54 68.60 2.03 46.52 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 C -0.04 -1.25 6.31 22.33 0.14 -1.11 16 21 Cl -0.06 -1.89 25.89 -2.72 -0.07 -1.96 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.07 1.33 6.91 -2.39 -0.02 1.31 16 24 H 0.10 1.13 8.09 -2.38 -0.02 1.11 16 25 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 26 H 0.15 3.45 8.00 -2.91 -0.02 3.43 16 27 H 0.07 2.83 7.25 -2.39 -0.02 2.81 16 28 H 0.05 1.54 7.81 -2.39 -0.02 1.52 16 29 H 0.07 2.28 7.24 -2.38 -0.02 2.27 16 30 H 0.06 2.48 6.71 -2.39 -0.02 2.46 16 31 H 0.02 0.59 8.07 -2.39 -0.02 0.57 16 32 H 0.01 0.31 7.86 -2.39 -0.02 0.29 16 33 H -0.04 -2.08 8.12 -2.39 -0.02 -2.10 16 34 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -63.41 304.61 3.68 -59.73 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: 1.10 Total: 0.16 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 3.84 Total: -19.01 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -4.00 Total: -83.05 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.78 Total: -2.40 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.07 Total: -1.96 kcal Total: -63.41 3.68 -59.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238778540.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.192 kcal (2) G-P(sol) polarization free energy of solvation -63.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds