Wall clock time and date at job start Mon Mar 30 2020 01:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 119.97974 * 2 1 4 4 C 1.38439 * 119.99982 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.02251 * 179.97438 * 4 3 2 6 6 C 1.38459 * 119.96434 * 359.97438 * 4 3 2 7 7 C 1.38295 * 119.96014 * 0.02562 * 6 4 3 8 8 Cl 1.73606 * 120.00089 * 179.97438 * 7 6 4 9 9 C 1.38197 * 119.97888 * 179.71918 * 2 1 3 10 10 C 1.50695 * 119.98393 * 0.02606 * 9 2 1 11 11 N 1.46897 * 109.47579 * 89.99886 * 10 9 2 12 12 C 1.46906 * 110.99507 * 293.95507 * 11 10 9 13 13 C 1.46896 * 111.00615 * 170.00406 * 11 10 9 14 14 C 1.50701 * 109.47407 * 190.00057 * 13 11 10 15 15 H 1.08000 * 119.99648 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99725 * 179.97438 * 14 13 11 17 17 N 1.31508 * 120.00293 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99594 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47435 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47193 * 120.00218 * 18 16 14 21 21 H 1.48498 * 109.47373 * 240.00402 * 18 16 14 22 22 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 25 25 H 1.08001 * 119.99848 * 359.97438 * 3 2 1 26 26 H 1.07999 * 120.02541 * 179.97438 * 6 4 3 27 27 H 1.09000 * 109.47150 * 209.99595 * 10 9 2 28 28 H 1.08998 * 109.47180 * 329.99709 * 10 9 2 29 29 H 1.08998 * 109.47486 * 60.00110 * 12 11 10 30 30 H 1.08999 * 109.46783 * 179.97438 * 12 11 10 31 31 H 1.08996 * 109.47339 * 299.99720 * 12 11 10 32 32 H 1.09007 * 109.46733 * 309.99599 * 13 11 10 33 33 H 1.08990 * 109.47324 * 69.99518 * 13 11 10 34 34 H 0.97008 * 119.99653 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1973 0.0000 4 6 3.5821 1.1978 0.0005 5 9 4.2577 2.3678 0.0000 6 6 4.2741 -0.0014 0.0016 7 6 3.5815 -1.1984 0.0016 8 17 4.4480 -2.7028 0.0023 9 6 2.1976 -1.1971 0.0059 10 6 1.4433 -2.5016 0.0117 11 7 1.1986 -2.9321 -1.3714 12 6 0.2888 -2.0053 -2.0579 13 6 0.6795 -4.3057 -1.4113 14 6 0.6728 -4.7990 -2.8353 15 1 1.0191 -4.1562 -3.6310 16 6 0.2245 -6.0709 -3.1220 17 7 -0.1968 -6.8537 -2.1530 18 14 0.2155 -6.6821 -4.8872 19 1 0.7355 -5.6174 -5.7825 20 1 1.0774 -7.8863 -4.9985 21 1 -1.1729 -7.0287 -5.2840 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6574 2.1325 -0.0004 26 1 5.3541 -0.0022 0.0016 27 1 2.0317 -3.2593 0.5292 28 1 0.4908 -2.3683 0.5245 29 1 0.7300 -1.0087 -2.0749 30 1 0.1251 -2.3472 -3.0799 31 1 -0.6635 -1.9721 -1.5286 32 1 1.3151 -4.9520 -0.8059 33 1 -0.3362 -4.3218 -1.0164 34 1 -0.5125 -7.7485 -2.3549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001238781241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:16 Heat of formation + Delta-G solvation = -24.578361 kcal Electronic energy + Delta-G solvation = -18551.476330 eV Core-core repulsion = 15424.666566 eV Total energy + Delta-G solvation = -3126.809764 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -48.98051 -39.78347 -36.48362 -36.23405 -33.01201 -32.34969 -30.95832 -27.88812 -27.18365 -25.95476 -23.94709 -22.29475 -21.35192 -19.99278 -17.41137 -16.93234 -16.45772 -15.78625 -15.46459 -15.07143 -14.69325 -14.50639 -14.20249 -13.51747 -13.41261 -13.08690 -12.92236 -12.70678 -12.33414 -11.93881 -11.62662 -11.48648 -11.21730 -11.02749 -10.98847 -10.80948 -10.65785 -10.48866 -10.37587 -9.86610 -9.22525 -8.77651 -8.52884 -8.41794 -7.24784 -6.03215 -4.04022 1.01803 1.05565 2.24046 3.30829 3.37820 3.39014 3.43869 4.16639 4.42965 4.59949 4.80432 4.87197 5.02956 5.20363 5.21394 5.33608 5.51782 5.59601 5.71918 5.80152 5.90101 5.98982 6.07318 6.15643 6.26512 6.27521 6.50900 6.70895 6.75201 7.26282 7.30436 7.78717 8.06152 8.17008 8.51939 9.03718 9.60157 11.07698 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.005032 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.721581 B = 5562.958172 C = 6016.820906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.040 4.040 3 C -0.154 4.154 4 C 0.104 3.896 5 F -0.139 7.139 6 C -0.157 4.157 7 C 0.013 3.987 8 Cl -0.042 7.042 9 C -0.064 4.064 10 C 0.083 3.917 11 N -0.527 5.527 12 C 0.030 3.970 13 C 0.194 3.806 14 C -0.504 4.504 15 H 0.064 0.936 16 C 0.055 3.945 17 N -0.899 5.899 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.285 1.285 22 H 0.087 0.913 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.137 0.863 26 H 0.142 0.858 27 H 0.084 0.916 28 H 0.041 0.959 29 H 0.049 0.951 30 H 0.073 0.927 31 H 0.015 0.985 32 H 0.031 0.969 33 H -0.009 1.009 34 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.481 14.796 6.384 16.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.041 4.041 3 C -0.173 4.173 4 C 0.084 3.916 5 F -0.117 7.117 6 C -0.177 4.177 7 C -0.015 4.015 8 Cl -0.013 7.013 9 C -0.066 4.066 10 C -0.045 4.045 11 N -0.251 5.251 12 C -0.119 4.119 13 C 0.069 3.931 14 C -0.543 4.543 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.539 5.539 18 Si 0.724 3.276 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.212 1.212 22 H 0.106 0.894 23 H 0.085 0.915 24 H 0.096 0.904 25 H 0.155 0.845 26 H 0.160 0.840 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.092 0.908 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.009 0.991 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 4.955 14.500 6.161 16.515 hybrid contribution -0.483 -0.355 -0.519 0.793 sum 4.472 14.145 5.642 15.872 Atomic orbital electron populations 1.21217 0.90024 1.03204 1.03771 1.19544 0.96621 0.90967 0.96960 1.20999 0.92064 0.99273 1.04996 1.17340 0.89891 0.80806 1.03517 1.91494 1.80386 1.45812 1.94053 1.20886 1.01077 0.89886 1.05807 1.20463 0.91832 0.87462 1.01725 1.98402 1.75760 1.30723 1.96402 1.19801 0.91675 0.96212 0.98916 1.21139 0.97842 0.92262 0.93215 1.62159 1.47383 1.04799 1.10776 1.22534 0.93268 0.95542 1.00541 1.19749 0.93209 0.82134 0.97978 1.21175 1.41522 0.98793 0.92764 0.91802 1.24969 0.95512 0.96745 0.97345 1.69966 1.43744 1.08610 1.31546 0.86465 0.77487 0.78806 0.84807 1.19668 1.21031 1.21154 0.89436 0.91487 0.90360 0.84514 0.84038 0.89720 0.94085 0.93272 0.90799 0.96698 0.95085 0.99091 0.93007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.05 36.01 0.29 -1.12 16 2 C -0.04 -0.52 4.90 -104.64 -0.51 -1.03 16 3 C -0.15 -1.84 9.68 -39.51 -0.38 -2.22 16 4 C 0.10 1.32 7.30 -39.43 -0.29 1.03 16 5 F -0.14 -1.74 17.27 2.25 0.04 -1.70 16 6 C -0.16 -2.06 9.81 -39.48 -0.39 -2.45 16 7 C 0.01 0.19 6.31 -39.50 -0.25 -0.06 16 8 Cl -0.04 -0.66 27.30 -51.86 -1.42 -2.07 16 9 C -0.06 -0.98 4.89 -104.58 -0.51 -1.49 16 10 C 0.08 1.45 4.50 -4.98 -0.02 1.43 16 11 N -0.53 -10.97 4.74 -245.83 -1.17 -12.14 16 12 C 0.03 0.55 7.53 60.07 0.45 1.00 16 13 C 0.19 4.92 4.72 -4.98 -0.02 4.90 16 14 C -0.50 -13.94 8.46 -34.44 -0.29 -14.23 16 15 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 16 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -26.43 13.29 55.43 0.74 -25.69 16 18 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H 0.09 0.99 5.78 -51.93 -0.30 0.69 16 23 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 24 H 0.08 0.93 5.86 -51.93 -0.30 0.62 16 25 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.14 1.61 8.06 -52.49 -0.42 1.19 16 27 H 0.08 1.53 6.70 -51.93 -0.35 1.18 16 28 H 0.04 0.68 5.92 -51.93 -0.31 0.37 16 29 H 0.05 0.80 5.16 -51.93 -0.27 0.53 16 30 H 0.07 1.50 6.76 -51.93 -0.35 1.15 16 31 H 0.01 0.26 7.21 -51.93 -0.37 -0.12 16 32 H 0.03 0.85 7.93 -51.93 -0.41 0.43 16 33 H -0.01 -0.23 8.12 -51.93 -0.42 -0.66 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 294.15 15.07 4.43 4.43 Total: -1.00 -29.23 294.15 -8.28 -37.51 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -3.86 Total: -4.08 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -2.02 Total: -12.78 kcal Atomic # 7 Polarization: -37.40 SS G_CDS: -0.43 Total: -37.83 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -1.42 Total: -2.07 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.23 -8.28 -37.51 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238781241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.933 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds