Wall clock time and date at job start Mon Mar 30 2020 01:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38230 * 119.97974 * 2 1 4 4 C 1.38439 * 119.99982 * 179.97438 * 3 2 1 5 5 F 1.35101 * 120.02251 * 179.97438 * 4 3 2 6 6 C 1.38459 * 119.96434 * 359.97438 * 4 3 2 7 7 C 1.38295 * 119.96014 * 0.02562 * 6 4 3 8 8 Cl 1.73606 * 120.00089 * 179.97438 * 7 6 4 9 9 C 1.38197 * 119.97888 * 179.71918 * 2 1 3 10 10 C 1.50695 * 119.98393 * 0.02606 * 9 2 1 11 11 N 1.46897 * 109.47579 * 89.99886 * 10 9 2 12 12 C 1.46906 * 110.99507 * 293.95507 * 11 10 9 13 13 C 1.46896 * 111.00615 * 170.00406 * 11 10 9 14 14 C 1.50701 * 109.47407 * 190.00057 * 13 11 10 15 15 H 1.08000 * 119.99648 * 359.97438 * 14 13 11 16 16 C 1.37875 * 119.99725 * 179.97438 * 14 13 11 17 17 N 1.31508 * 120.00293 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99594 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47435 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.47193 * 120.00218 * 18 16 14 21 21 H 1.48498 * 109.47373 * 240.00402 * 18 16 14 22 22 H 1.09002 * 109.47152 * 90.00172 * 1 2 3 23 23 H 1.09001 * 109.46980 * 330.00272 * 1 2 3 24 24 H 1.09004 * 109.47113 * 210.00253 * 1 2 3 25 25 H 1.08001 * 119.99848 * 359.97438 * 3 2 1 26 26 H 1.07999 * 120.02541 * 179.97438 * 6 4 3 27 27 H 1.09000 * 109.47150 * 209.99595 * 10 9 2 28 28 H 1.08998 * 109.47180 * 329.99709 * 10 9 2 29 29 H 1.08998 * 109.47486 * 60.00110 * 12 11 10 30 30 H 1.08999 * 109.46783 * 179.97438 * 12 11 10 31 31 H 1.08996 * 109.47339 * 299.99720 * 12 11 10 32 32 H 1.09007 * 109.46733 * 309.99599 * 13 11 10 33 33 H 1.08990 * 109.47324 * 69.99518 * 13 11 10 34 34 H 0.97008 * 119.99653 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1978 1.1973 0.0000 4 6 3.5821 1.1978 0.0005 5 9 4.2577 2.3678 0.0000 6 6 4.2741 -0.0014 0.0016 7 6 3.5815 -1.1984 0.0016 8 17 4.4480 -2.7028 0.0023 9 6 2.1976 -1.1971 0.0059 10 6 1.4433 -2.5016 0.0117 11 7 1.1986 -2.9321 -1.3714 12 6 0.2888 -2.0053 -2.0579 13 6 0.6795 -4.3057 -1.4113 14 6 0.6728 -4.7990 -2.8353 15 1 1.0191 -4.1562 -3.6310 16 6 0.2245 -6.0709 -3.1220 17 7 -0.1968 -6.8537 -2.1530 18 14 0.2155 -6.6821 -4.8872 19 1 0.7355 -5.6174 -5.7825 20 1 1.0774 -7.8863 -4.9985 21 1 -1.1729 -7.0287 -5.2840 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 0.8900 0.5138 24 1 -0.3633 -0.8900 0.5139 25 1 1.6574 2.1325 -0.0004 26 1 5.3541 -0.0022 0.0016 27 1 2.0317 -3.2593 0.5292 28 1 0.4908 -2.3683 0.5245 29 1 0.7300 -1.0087 -2.0749 30 1 0.1251 -2.3472 -3.0799 31 1 -0.6635 -1.9721 -1.5286 32 1 1.3151 -4.9520 -0.8059 33 1 -0.3362 -4.3218 -1.0164 34 1 -0.5125 -7.7485 -2.3549 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001238781241.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:15 Heat of formation + Delta-G solvation = -41.365345 kcal Electronic energy + Delta-G solvation = -18552.204268 eV Core-core repulsion = 15424.666566 eV Total energy + Delta-G solvation = -3127.537702 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 271.083 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.97299 -40.90956 -37.98858 -37.45155 -34.81987 -33.64034 -32.25620 -29.13615 -28.97464 -27.21503 -25.64546 -23.42669 -22.81938 -21.40402 -18.59937 -18.34179 -18.00231 -16.99973 -16.73943 -16.50681 -16.23094 -15.75514 -15.66533 -14.87685 -14.66305 -14.29066 -14.24285 -13.85102 -13.78950 -13.46582 -13.15135 -12.87203 -12.71557 -12.57183 -12.41632 -12.20257 -12.16749 -12.03438 -11.81874 -11.62765 -11.24982 -10.60032 -9.79774 -9.63181 -8.92403 -8.18130 -6.27168 -0.04526 0.01971 1.10761 1.41200 1.42692 1.55516 2.31363 2.43174 3.14854 3.15242 3.45386 3.61628 3.73114 3.90347 4.03425 4.23906 4.45298 4.51866 4.61397 4.68344 4.74596 4.78284 4.83776 4.90979 5.08416 5.09212 5.21930 5.26775 5.34257 5.43375 5.67194 5.73146 6.07506 6.36247 6.63387 6.89116 7.42230 8.92837 Molecular weight = 271.08amu Principal moments of inertia in cm(-1) A = 0.025478 B = 0.005032 C = 0.004653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.721581 B = 5562.958172 C = 6016.820906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.038 4.038 3 C -0.143 4.143 4 C 0.106 3.894 5 F -0.135 7.135 6 C -0.157 4.157 7 C 0.000 4.000 8 Cl -0.059 7.059 9 C -0.083 4.083 10 C 0.088 3.912 11 N -0.536 5.536 12 C 0.036 3.964 13 C 0.211 3.789 14 C -0.518 4.518 15 H 0.061 0.939 16 C 0.003 3.997 17 N -0.934 5.934 18 Si 0.965 3.035 19 H -0.265 1.265 20 H -0.281 1.281 21 H -0.278 1.278 22 H 0.088 0.912 23 H 0.097 0.903 24 H 0.067 0.933 25 H 0.169 0.831 26 H 0.156 0.844 27 H 0.069 0.931 28 H 0.051 0.949 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.002 0.998 33 H -0.033 1.033 34 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 16.963 5.753 18.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.039 4.039 3 C -0.161 4.161 4 C 0.087 3.913 5 F -0.114 7.114 6 C -0.177 4.177 7 C -0.028 4.028 8 Cl -0.030 7.030 9 C -0.084 4.084 10 C -0.040 4.040 11 N -0.260 5.260 12 C -0.112 4.112 13 C 0.085 3.915 14 C -0.556 4.556 15 H 0.079 0.921 16 C -0.194 4.194 17 N -0.575 5.575 18 Si 0.790 3.210 19 H -0.189 1.189 20 H -0.207 1.207 21 H -0.203 1.203 22 H 0.107 0.893 23 H 0.116 0.884 24 H 0.086 0.914 25 H 0.186 0.814 26 H 0.173 0.827 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.020 0.980 33 H -0.015 1.015 34 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.801 16.693 5.536 18.231 hybrid contribution -0.408 -0.918 -0.255 1.036 sum 4.393 15.775 5.281 17.206 Atomic orbital electron populations 1.21248 0.88626 1.04254 1.04071 1.19729 0.97583 0.90409 0.96164 1.21284 0.91747 1.00012 1.03064 1.17428 0.90343 0.80620 1.02953 1.91511 1.80421 1.45511 1.93953 1.21013 1.01914 0.89475 1.05268 1.20560 0.91843 0.87423 1.02931 1.98394 1.76082 1.31950 1.96579 1.19663 0.91758 0.95791 1.01236 1.21048 0.98441 0.93333 0.91139 1.62026 1.47534 1.03123 1.13343 1.22516 0.93651 0.96014 0.99039 1.19355 0.91244 0.84585 0.96315 1.21465 1.41342 0.99115 0.93668 0.92090 1.25839 0.95020 0.96936 1.01649 1.70085 1.44571 1.09043 1.33777 0.85396 0.77756 0.78209 0.79625 1.18888 1.20686 1.20323 0.89338 0.88400 0.91436 0.81361 0.82658 0.91211 0.93141 0.90558 0.92941 0.95679 0.97996 1.01512 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.43 8.05 71.24 0.57 -1.86 16 2 C -0.04 -0.88 4.90 -19.88 -0.10 -0.98 16 3 C -0.14 -2.85 9.68 22.32 0.22 -2.64 16 4 C 0.11 2.38 7.30 22.37 0.16 2.55 16 5 F -0.14 -2.97 17.27 44.97 0.78 -2.19 16 6 C -0.16 -3.85 9.81 22.34 0.22 -3.63 16 7 C 0.00 0.00 6.31 22.32 0.14 0.14 16 8 Cl -0.06 -1.87 27.30 -2.72 -0.07 -1.95 16 9 C -0.08 -2.44 4.89 -19.84 -0.10 -2.53 16 10 C 0.09 3.09 4.50 85.56 0.39 3.47 16 11 N -0.54 -22.61 4.74 -931.68 -4.42 -27.03 16 12 C 0.04 1.30 7.53 127.69 0.96 2.26 16 13 C 0.21 11.09 4.72 85.56 0.40 11.49 16 14 C -0.52 -29.15 8.46 25.60 0.22 -28.93 16 15 H 0.06 3.40 7.12 -2.91 -0.02 3.38 16 16 C 0.00 0.19 5.46 84.66 0.46 0.66 16 17 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 18 Si 0.97 44.34 29.54 68.60 2.03 46.37 16 19 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 20 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 22 H 0.09 1.72 5.78 -2.39 -0.01 1.71 16 23 H 0.10 1.30 8.09 -2.39 -0.02 1.28 16 24 H 0.07 1.47 5.86 -2.38 -0.01 1.46 16 25 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 26 H 0.16 3.27 8.06 -2.91 -0.02 3.25 16 27 H 0.07 2.63 6.70 -2.39 -0.02 2.61 16 28 H 0.05 1.67 5.92 -2.39 -0.01 1.65 16 29 H 0.08 2.35 5.16 -2.39 -0.01 2.33 16 30 H 0.05 2.12 6.76 -2.39 -0.02 2.11 16 31 H 0.02 0.85 7.21 -2.39 -0.02 0.83 16 32 H 0.00 0.11 7.93 -2.38 -0.02 0.09 16 33 H -0.03 -1.84 8.12 -2.39 -0.02 -1.86 16 34 H 0.26 14.83 8.31 -92.70 -0.77 14.06 16 Total: -1.00 -63.21 294.15 3.26 -59.95 By element: Atomic # 1 Polarization: -0.60 SS G_CDS: 1.12 Total: 0.52 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 3.55 Total: -20.00 kcal Atomic # 7 Polarization: -78.56 SS G_CDS: -4.14 Total: -82.70 kcal Atomic # 9 Polarization: -2.97 SS G_CDS: 0.78 Total: -2.19 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Atomic # 17 Polarization: -1.87 SS G_CDS: -0.07 Total: -1.95 kcal Total: -63.21 3.26 -59.95 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001238781241.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.582 kcal (2) G-P(sol) polarization free energy of solvation -63.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds