Wall clock time and date at job start Mon Mar 30 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76200 * 102.99917 * 2 1 4 4 C 1.39292 * 119.93820 * 179.97438 * 3 2 1 5 5 C 1.37606 * 120.06381 * 179.97438 * 4 3 2 6 6 C 1.39810 * 119.93698 * 0.02562 * 5 4 3 7 7 C 1.47736 * 120.06234 * 179.97438 * 6 5 4 8 8 C 1.40032 * 119.46230 * 179.97438 * 7 6 5 9 9 C 1.36515 * 119.46635 * 180.02562 * 8 7 6 10 10 C 1.41350 * 118.42413 * 0.25322 * 9 8 7 11 11 C 1.40999 * 120.54503 * 179.72256 * 10 9 8 12 12 H 1.08000 * 120.00442 * 203.73777 * 11 10 9 13 13 C 1.39969 * 119.99817 * 23.73979 * 11 10 9 14 14 N 1.30834 * 119.99888 * 17.65453 * 13 11 10 15 15 Si 1.86801 * 119.99991 * 197.65243 * 13 11 10 16 16 H 1.48501 * 109.46715 * 90.00209 * 15 13 11 17 17 H 1.48496 * 109.47028 * 209.99758 * 15 13 11 18 18 H 1.48497 * 109.47208 * 330.00478 * 15 13 11 19 19 C 1.40962 * 118.91003 * 359.50906 * 10 9 8 20 20 N 1.31243 * 120.41121 * 0.49825 * 19 10 9 21 21 C 1.39812 * 119.87937 * 0.27155 * 6 5 4 22 22 C 1.37620 * 119.92825 * 359.44626 * 21 6 5 23 23 H 1.09001 * 109.47209 * 300.00220 * 1 2 3 24 24 H 1.09003 * 109.47178 * 60.00365 * 1 2 3 25 25 H 1.09002 * 109.46599 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.96745 * 359.95226 * 4 3 2 27 27 H 1.08004 * 120.03800 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.26661 * 0.02562 * 8 7 6 29 29 H 1.07997 * 120.78828 * 179.97438 * 9 8 7 30 30 H 0.97000 * 119.99656 * 179.97438 * 14 13 11 31 31 H 1.08007 * 119.79906 * 180.24444 * 19 10 9 32 32 H 1.07991 * 120.03466 * 179.70693 * 21 6 5 33 33 H 1.08001 * 119.96654 * 180.25629 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5428 2.1227 0.0005 5 6 3.8553 3.4628 0.0000 6 6 2.8338 4.4174 -0.0005 7 6 3.1661 5.8569 -0.0005 8 6 2.1331 6.8023 -0.0016 9 6 2.4400 8.1324 -0.0022 10 6 3.8026 8.5085 -0.0071 11 6 4.1703 9.8697 -0.0137 12 1 5.1367 10.1662 -0.3938 13 6 3.2827 10.8367 0.4724 14 7 2.2819 10.4809 1.2363 15 14 3.5272 12.6351 0.0306 16 1 2.7871 12.9426 -1.2197 17 1 3.0149 13.4895 1.1318 18 1 4.9737 12.9029 -0.1719 19 6 4.7878 7.5003 -0.0006 20 7 4.4426 6.2341 -0.0001 21 6 1.4972 4.0073 0.0052 22 6 1.1906 2.6657 -0.0001 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 4.3315 1.3848 0.0017 27 1 4.8886 3.7770 0.0000 28 1 1.1018 6.4816 -0.0020 29 1 1.6603 8.8797 -0.0034 30 1 1.6671 11.1511 1.5735 31 1 5.8333 7.7715 -0.0003 32 1 0.7062 4.7425 0.0096 33 1 0.1583 2.3482 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239493973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:05 Heat of formation + Delta-G solvation = 39.490247 kcal Electronic energy + Delta-G solvation = -16869.988574 eV Core-core repulsion = 14178.769965 eV Total energy + Delta-G solvation = -2691.218609 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.05182 -37.75782 -34.38110 -31.77127 -31.19574 -30.51717 -29.19195 -28.70940 -25.64509 -22.88095 -22.66514 -20.93313 -20.52486 -17.64439 -17.43503 -16.26949 -15.62441 -15.01115 -14.66450 -14.35044 -13.89725 -13.85341 -13.72119 -13.23025 -13.07648 -12.93902 -12.44003 -12.16806 -11.94500 -11.79345 -11.43612 -11.42697 -11.01140 -10.75761 -10.66054 -10.10064 -9.97699 -9.72442 -9.32340 -8.60332 -8.43270 -8.16950 -7.85578 -7.13947 -6.90055 -4.62620 1.35386 1.66432 1.83102 2.53684 2.57267 2.87746 2.91231 2.93555 3.07908 3.67594 4.10273 4.55987 4.96725 4.98167 5.13237 5.24058 5.43355 5.53982 5.56653 5.80802 5.87493 6.00586 6.15350 6.38107 6.49818 6.61521 6.64178 6.69085 6.77996 6.90735 7.08891 7.21882 7.32113 7.61731 7.69636 7.80422 8.23560 8.42585 8.53049 9.47769 9.79235 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.053495 B = 0.003420 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.287103 B = 8185.370411 C = 8631.446644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.143 6.143 3 C -0.117 4.117 4 C -0.094 4.094 5 C -0.099 4.099 6 C 0.025 3.975 7 C -0.014 4.014 8 C -0.119 4.119 9 C -0.146 4.146 10 C 0.069 3.931 11 C -0.430 4.430 12 H 0.089 0.911 13 C 0.071 3.929 14 N -0.773 5.773 15 Si 0.918 3.082 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.258 1.258 19 C -0.016 4.016 20 N -0.446 5.446 21 C -0.120 4.120 22 C -0.124 4.124 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.102 0.898 26 H 0.120 0.880 27 H 0.134 0.866 28 H 0.101 0.899 29 H 0.127 0.873 30 H 0.288 0.712 31 H 0.130 0.870 32 H 0.124 0.876 33 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.270 -9.404 -1.555 10.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.097 5.903 3 C -0.229 4.229 4 C -0.117 4.117 5 C -0.120 4.120 6 C 0.022 3.978 7 C -0.147 4.147 8 C -0.140 4.140 9 C -0.170 4.170 10 C 0.064 3.936 11 C -0.458 4.458 12 H 0.107 0.893 13 C -0.150 4.150 14 N -0.396 5.396 15 Si 0.741 3.259 16 H -0.189 1.189 17 H -0.199 1.199 18 H -0.181 1.181 19 C -0.182 4.182 20 N -0.153 5.153 21 C -0.141 4.141 22 C -0.147 4.147 23 H 0.100 0.900 24 H 0.100 0.900 25 H 0.121 0.879 26 H 0.138 0.862 27 H 0.152 0.848 28 H 0.119 0.881 29 H 0.145 0.855 30 H 0.099 0.901 31 H 0.148 0.852 32 H 0.142 0.858 33 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.221 -11.002 -1.397 11.549 hybrid contribution -1.582 2.695 -0.039 3.125 sum -4.802 -8.307 -1.436 9.702 Atomic orbital electron populations 1.23580 0.95234 1.06437 1.05528 1.85181 1.06057 1.05242 1.93844 1.21512 0.96699 0.94976 1.09735 1.20607 0.93721 0.96032 1.01323 1.21198 1.00130 0.91053 0.99576 1.18772 0.92197 0.92056 0.94734 1.18748 0.89139 0.90732 1.16121 1.21312 0.97836 0.94220 1.00590 1.21316 0.97072 0.94360 1.04286 1.18635 0.92377 0.94179 0.88376 1.19713 1.02050 0.90830 1.33229 0.89340 1.26118 0.93828 1.02691 0.92383 1.69803 1.11615 1.37488 1.20704 0.86137 0.80360 0.80103 0.79302 1.18901 1.19949 1.18150 1.22463 0.98243 0.87309 1.10175 1.66935 1.19153 1.20356 1.08843 1.21067 0.96104 0.94825 1.02121 1.20887 0.97408 0.93027 1.03377 0.89964 0.89970 0.87947 0.86249 0.84785 0.88078 0.85526 0.90091 0.85221 0.85828 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.14 101.05 0.92 -0.37 16 2 S -0.14 -1.85 22.56 -107.50 -2.43 -4.28 16 3 C -0.12 -1.84 6.13 -38.80 -0.24 -2.08 16 4 C -0.09 -1.55 9.77 -39.42 -0.39 -1.94 16 5 C -0.10 -1.86 9.56 -39.22 -0.38 -2.23 16 6 C 0.03 0.51 5.88 -104.84 -0.62 -0.11 16 7 C -0.01 -0.33 6.74 -82.76 -0.56 -0.88 16 8 C -0.12 -2.73 9.38 -39.53 -0.37 -3.10 16 9 C -0.15 -3.59 8.74 -39.02 -0.34 -3.93 16 10 C 0.07 1.74 5.59 -106.64 -0.60 1.15 16 11 C -0.43 -10.42 9.06 -37.89 -0.34 -10.76 16 12 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 13 C 0.07 1.62 5.17 -17.33 -0.09 1.53 16 14 N -0.77 -18.29 10.92 55.55 0.61 -17.69 16 15 Si 0.92 16.91 29.60 -169.99 -5.03 11.88 16 16 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 18 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 19 C -0.02 -0.39 10.97 -16.77 -0.18 -0.57 16 20 N -0.45 -10.76 9.38 -9.12 -0.09 -10.84 16 21 C -0.12 -2.12 9.40 -39.22 -0.37 -2.49 16 22 C -0.12 -1.92 9.35 -39.42 -0.37 -2.29 16 23 H 0.08 0.74 7.74 -51.92 -0.40 0.33 16 24 H 0.08 0.73 7.74 -51.92 -0.40 0.33 16 25 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 26 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 27 H 0.13 2.53 7.51 -52.48 -0.39 2.14 16 28 H 0.10 2.02 6.14 -52.49 -0.32 1.70 16 29 H 0.13 3.14 6.19 -52.49 -0.32 2.82 16 30 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 31 H 0.13 2.87 8.06 -52.48 -0.42 2.45 16 32 H 0.12 2.02 6.14 -52.49 -0.32 1.70 16 33 H 0.12 1.48 5.86 -52.49 -0.31 1.17 16 LS Contribution 296.45 15.07 4.47 4.47 Total: -1.00 -26.52 296.45 -9.67 -36.19 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -3.29 Total: 8.35 kcal Atomic # 6 Polarization: -24.17 SS G_CDS: -3.91 Total: -28.08 kcal Atomic # 7 Polarization: -29.05 SS G_CDS: 0.52 Total: -28.53 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Atomic # 16 Polarization: -1.85 SS G_CDS: -2.43 Total: -4.28 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -26.52 -9.67 -36.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239493973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.684 kcal (2) G-P(sol) polarization free energy of solvation -26.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds