Wall clock time and date at job start Mon Mar 30 2020 00:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.76200 * 102.99917 * 2 1 4 4 C 1.39292 * 119.93820 * 179.97438 * 3 2 1 5 5 C 1.37606 * 120.06381 * 179.97438 * 4 3 2 6 6 C 1.39810 * 119.93698 * 0.02562 * 5 4 3 7 7 C 1.47736 * 120.06234 * 179.97438 * 6 5 4 8 8 C 1.40032 * 119.46230 * 179.97438 * 7 6 5 9 9 C 1.36515 * 119.46635 * 180.02562 * 8 7 6 10 10 C 1.41350 * 118.42413 * 0.25322 * 9 8 7 11 11 C 1.40999 * 120.54503 * 179.72256 * 10 9 8 12 12 H 1.08000 * 120.00442 * 203.73777 * 11 10 9 13 13 C 1.39969 * 119.99817 * 23.73979 * 11 10 9 14 14 N 1.30834 * 119.99888 * 17.65453 * 13 11 10 15 15 Si 1.86801 * 119.99991 * 197.65243 * 13 11 10 16 16 H 1.48501 * 109.46715 * 90.00209 * 15 13 11 17 17 H 1.48496 * 109.47028 * 209.99758 * 15 13 11 18 18 H 1.48497 * 109.47208 * 330.00478 * 15 13 11 19 19 C 1.40962 * 118.91003 * 359.50906 * 10 9 8 20 20 N 1.31243 * 120.41121 * 0.49825 * 19 10 9 21 21 C 1.39812 * 119.87937 * 0.27155 * 6 5 4 22 22 C 1.37620 * 119.92825 * 359.44626 * 21 6 5 23 23 H 1.09001 * 109.47209 * 300.00220 * 1 2 3 24 24 H 1.09003 * 109.47178 * 60.00365 * 1 2 3 25 25 H 1.09002 * 109.46599 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.96745 * 359.95226 * 4 3 2 27 27 H 1.08004 * 120.03800 * 180.02562 * 5 4 3 28 28 H 1.08000 * 120.26661 * 0.02562 * 8 7 6 29 29 H 1.07997 * 120.78828 * 179.97438 * 9 8 7 30 30 H 0.97000 * 119.99656 * 179.97438 * 14 13 11 31 31 H 1.08007 * 119.79906 * 180.24444 * 19 10 9 32 32 H 1.07991 * 120.03466 * 179.70693 * 21 6 5 33 33 H 1.08001 * 119.96654 * 180.25629 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 3.5428 2.1227 0.0005 5 6 3.8553 3.4628 0.0000 6 6 2.8338 4.4174 -0.0005 7 6 3.1661 5.8569 -0.0005 8 6 2.1331 6.8023 -0.0016 9 6 2.4400 8.1324 -0.0022 10 6 3.8026 8.5085 -0.0071 11 6 4.1703 9.8697 -0.0137 12 1 5.1367 10.1662 -0.3938 13 6 3.2827 10.8367 0.4724 14 7 2.2819 10.4809 1.2363 15 14 3.5272 12.6351 0.0306 16 1 2.7871 12.9426 -1.2197 17 1 3.0149 13.4895 1.1318 18 1 4.9737 12.9029 -0.1719 19 6 4.7878 7.5003 -0.0006 20 7 4.4426 6.2341 -0.0001 21 6 1.4972 4.0073 0.0052 22 6 1.1906 2.6657 -0.0001 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 4.3315 1.3848 0.0017 27 1 4.8886 3.7770 0.0000 28 1 1.1018 6.4816 -0.0020 29 1 1.6603 8.8797 -0.0034 30 1 1.6671 11.1511 1.5735 31 1 5.8333 7.7715 -0.0003 32 1 0.7062 4.7425 0.0096 33 1 0.1583 2.3482 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239493973.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:05 Heat of formation + Delta-G solvation = 27.583368 kcal Electronic energy + Delta-G solvation = -16870.504895 eV Core-core repulsion = 14178.769965 eV Total energy + Delta-G solvation = -2691.734930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.66479 -39.30985 -36.11648 -33.34022 -32.81818 -31.98935 -30.74955 -29.61939 -27.34650 -24.49938 -24.21089 -22.51962 -22.13327 -19.39367 -18.73963 -17.72975 -17.27492 -16.63017 -15.90435 -15.80482 -15.33368 -15.20481 -14.79058 -14.55898 -14.48224 -14.45299 -13.78084 -13.55705 -13.54244 -13.26251 -13.15829 -12.87091 -12.42404 -12.23573 -12.04530 -11.69344 -11.34724 -11.14935 -10.80214 -10.28661 -9.99524 -9.93148 -9.46316 -8.81525 -8.20177 -6.44701 -0.11227 0.49080 0.65256 0.90547 1.09603 1.38492 1.52735 1.53971 1.54391 2.14320 2.53628 2.95099 3.70986 3.73919 3.93616 4.01160 4.27214 4.31003 4.33253 4.41334 4.52657 4.69787 4.75888 4.86041 4.90846 4.94311 5.08267 5.13982 5.26706 5.30681 5.35868 5.69070 5.75896 5.89026 6.01077 6.02293 6.41662 6.63602 6.70835 7.64290 8.12059 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.053495 B = 0.003420 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.287103 B = 8185.370411 C = 8631.446644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.146 6.146 3 C -0.111 4.111 4 C -0.100 4.100 5 C -0.106 4.106 6 C -0.014 4.014 7 C -0.016 4.016 8 C -0.126 4.126 9 C -0.162 4.162 10 C 0.042 3.958 11 C -0.462 4.462 12 H 0.092 0.908 13 C 0.034 3.966 14 N -0.805 5.805 15 Si 0.992 3.008 16 H -0.260 1.260 17 H -0.266 1.266 18 H -0.254 1.254 19 C -0.038 4.038 20 N -0.460 5.460 21 C -0.117 4.117 22 C -0.122 4.122 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.128 0.872 26 H 0.138 0.862 27 H 0.122 0.878 28 H 0.128 0.872 29 H 0.120 0.880 30 H 0.297 0.703 31 H 0.140 0.860 32 H 0.135 0.865 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 -10.947 -1.735 12.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.095 5.905 3 C -0.223 4.223 4 C -0.123 4.123 5 C -0.126 4.126 6 C -0.017 4.017 7 C -0.151 4.151 8 C -0.146 4.146 9 C -0.187 4.187 10 C 0.038 3.962 11 C -0.490 4.490 12 H 0.110 0.890 13 C -0.184 4.184 14 N -0.429 5.429 15 Si 0.812 3.188 16 H -0.184 1.184 17 H -0.190 1.190 18 H -0.178 1.178 19 C -0.202 4.202 20 N -0.167 5.167 21 C -0.137 4.137 22 C -0.145 4.145 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.146 0.854 26 H 0.156 0.844 27 H 0.140 0.860 28 H 0.146 0.854 29 H 0.138 0.862 30 H 0.108 0.892 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -4.935 -12.569 -1.575 13.595 hybrid contribution -1.161 2.795 0.033 3.027 sum -6.096 -9.775 -1.542 11.623 Atomic orbital electron populations 1.23769 0.91720 1.08499 1.06451 1.85295 1.09882 1.02195 1.93140 1.21903 0.96416 0.97256 1.06771 1.20798 0.95059 0.95344 1.01119 1.21179 0.99408 0.92094 0.99944 1.18808 0.93923 0.90616 0.98344 1.19322 0.88803 0.92605 1.14352 1.21584 0.99298 0.93597 1.00077 1.21373 0.96876 0.95072 1.05409 1.18929 0.92893 0.95065 0.89350 1.19963 1.03073 0.91187 1.34756 0.88992 1.26973 0.93074 1.06835 0.91515 1.69833 1.12428 1.39305 1.21303 0.85032 0.80349 0.74335 0.79104 1.18444 1.19022 1.17755 1.22676 0.98788 0.87571 1.11144 1.66983 1.20018 1.20214 1.09527 1.21242 0.95123 0.96263 1.01109 1.21235 0.99137 0.91962 1.02195 0.89053 0.88985 0.85383 0.84445 0.86011 0.85412 0.86227 0.89200 0.84309 0.84772 0.83201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.14 113.37 1.04 -0.85 16 2 S -0.15 -3.26 22.56 -56.49 -1.27 -4.53 16 3 C -0.11 -3.19 6.13 22.78 0.14 -3.05 16 4 C -0.10 -3.17 9.77 22.37 0.22 -2.95 16 5 C -0.11 -3.97 9.56 22.50 0.22 -3.76 16 6 C -0.01 -0.56 5.88 -20.01 -0.12 -0.68 16 7 C -0.02 -0.77 6.74 41.90 0.28 -0.49 16 8 C -0.13 -5.87 9.38 22.30 0.21 -5.66 16 9 C -0.16 -8.30 8.74 22.63 0.20 -8.10 16 10 C 0.04 2.23 5.59 -21.17 -0.12 2.11 16 11 C -0.46 -23.22 9.06 23.37 0.21 -23.01 16 12 H 0.09 4.36 7.91 -2.91 -0.02 4.34 16 13 C 0.03 1.59 5.17 85.26 0.44 2.03 16 14 N -0.81 -38.91 10.92 21.83 0.24 -38.67 16 15 Si 0.99 34.71 29.60 68.60 2.03 36.74 16 16 H -0.26 -8.85 7.11 99.48 0.71 -8.15 16 17 H -0.27 -8.84 7.11 99.48 0.71 -8.13 16 18 H -0.25 -8.64 7.11 99.48 0.71 -7.94 16 19 C -0.04 -1.91 10.97 85.45 0.94 -0.98 16 20 N -0.46 -23.10 9.38 -182.76 -1.71 -24.82 16 21 C -0.12 -3.92 9.40 22.50 0.21 -3.71 16 22 C -0.12 -3.41 9.35 22.38 0.21 -3.21 16 23 H 0.09 1.18 7.74 -2.39 -0.02 1.16 16 24 H 0.09 1.17 7.74 -2.39 -0.02 1.15 16 25 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 27 H 0.12 4.76 7.51 -2.91 -0.02 4.74 16 28 H 0.13 5.08 6.14 -2.91 -0.02 5.07 16 29 H 0.12 6.17 6.19 -2.91 -0.02 6.15 16 30 H 0.30 12.76 8.30 -92.71 -0.77 11.99 16 31 H 0.14 6.52 8.06 -2.91 -0.02 6.50 16 32 H 0.13 4.12 6.14 -2.92 -0.02 4.10 16 33 H 0.15 3.12 5.86 -2.91 -0.02 3.11 16 Total: -1.00 -59.05 296.45 4.49 -54.57 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.13 Total: 29.01 kcal Atomic # 6 Polarization: -56.37 SS G_CDS: 4.07 Total: -52.30 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -1.48 Total: -63.49 kcal Atomic # 14 Polarization: 34.71 SS G_CDS: 2.03 Total: 36.74 kcal Atomic # 16 Polarization: -3.26 SS G_CDS: -1.27 Total: -4.53 kcal Total: -59.05 4.49 -54.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239493973.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.151 kcal (2) G-P(sol) polarization free energy of solvation -59.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds