Wall clock time and date at job start Mon Mar 30 2020 00:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76207 * 102.99976 * 2 1 4 4 C 1.39310 * 119.93012 * 180.02562 * 3 2 1 5 5 C 1.37118 * 120.06681 * 180.02562 * 4 3 2 6 6 C 1.39878 * 119.92996 * 359.97208 * 5 4 3 7 7 C 1.47577 * 120.06627 * 180.02562 * 6 5 4 8 8 N 1.32689 * 120.00544 * 316.14704 * 7 6 5 9 9 C 1.31706 * 121.70698 * 180.02562 * 8 7 6 10 10 C 1.38899 * 121.51720 * 359.97438 * 9 8 7 11 11 C 1.36851 * 119.82936 * 0.02562 * 10 9 8 12 12 C 1.41134 * 118.40263 * 0.24682 * 11 10 9 13 13 C 1.40819 * 120.72415 * 179.74970 * 12 11 10 14 14 H 1.08000 * 119.99818 * 151.59657 * 13 12 11 15 15 C 1.40013 * 119.99848 * 331.59127 * 13 12 11 16 16 N 1.30808 * 120.00519 * 348.24141 * 15 13 12 17 17 Si 1.86800 * 119.99813 * 168.23349 * 15 13 12 18 18 H 1.48505 * 109.46790 * 90.00411 * 17 15 13 19 19 H 1.48495 * 109.47435 * 210.00119 * 17 15 13 20 20 H 1.48496 * 109.47120 * 330.00798 * 17 15 13 21 21 C 1.39885 * 119.86507 * 0.28215 * 6 5 4 22 22 C 1.37107 * 119.92908 * 359.43750 * 21 6 5 23 23 H 1.09006 * 109.47086 * 299.99784 * 1 2 3 24 24 H 1.08997 * 109.47548 * 59.99938 * 1 2 3 25 25 H 1.08996 * 109.47211 * 180.02562 * 1 2 3 26 26 H 1.07999 * 119.96927 * 0.02562 * 4 3 2 27 27 H 1.08001 * 120.03026 * 180.02562 * 5 4 3 28 28 H 1.07994 * 119.23947 * 179.97438 * 9 8 7 29 29 H 1.08002 * 120.08452 * 179.97438 * 10 9 8 30 30 H 1.08005 * 120.80442 * 179.97438 * 11 10 9 31 31 H 0.96995 * 120.00497 * 179.97438 * 16 15 13 32 32 H 1.08003 * 120.03260 * 179.70269 * 21 6 5 33 33 H 1.07995 * 119.96865 * 180.27702 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5431 2.1226 -0.0005 5 6 3.8547 3.4579 0.0000 6 6 2.8328 4.4130 0.0005 7 6 3.1648 5.8510 0.0005 8 7 4.1217 6.3111 0.7962 9 6 4.4450 7.5875 0.8237 10 6 3.7994 8.5176 0.0190 11 6 2.8024 8.1111 -0.8258 12 6 2.4563 6.7431 -0.8467 13 6 1.4342 6.2724 -1.6933 14 1 1.4615 5.2568 -2.0599 15 6 0.3825 7.1209 -2.0598 16 7 0.2192 8.2636 -1.4445 17 14 -0.7874 6.6212 -3.4276 18 1 -1.9281 5.8647 -2.8515 19 1 -1.2954 7.8365 -4.1133 20 1 -0.0690 5.7649 -4.4053 21 6 1.4956 4.0025 0.0064 22 6 1.1903 2.6658 0.0000 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0276 0.0005 26 1 4.3316 1.3847 -0.0014 27 1 4.8881 3.7717 -0.0008 28 1 5.2302 7.9187 1.4871 29 1 4.0829 9.5589 0.0605 30 1 2.2896 8.8209 -1.4581 31 1 -0.5091 8.8516 -1.6987 32 1 0.7044 4.7377 0.0117 33 1 0.1582 2.3482 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239495108.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:07 Heat of formation + Delta-G solvation = 29.668327 kcal Electronic energy + Delta-G solvation = -17560.798455 eV Core-core repulsion = 14869.153935 eV Total energy + Delta-G solvation = -2691.644520 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.69194 -39.24455 -36.02723 -33.54169 -32.59767 -32.06327 -30.34358 -29.56864 -27.56243 -24.65456 -23.74664 -22.85955 -21.94885 -19.33167 -18.57036 -17.76871 -17.24543 -16.45936 -16.04752 -15.72983 -15.46166 -15.33559 -14.66158 -14.58282 -14.39783 -14.22543 -13.84435 -13.50171 -13.34640 -13.23043 -13.18063 -12.79824 -12.59020 -12.22334 -12.01181 -11.65969 -11.27575 -11.10914 -10.72325 -10.12255 -9.96427 -9.87156 -9.42512 -8.73452 -8.17164 -6.43134 0.04659 0.57031 0.67047 0.84266 1.12198 1.36509 1.46600 1.51249 1.54169 2.14885 2.69333 2.85882 3.65406 3.86518 4.00305 4.05973 4.30346 4.33528 4.45895 4.51985 4.56352 4.67127 4.80583 4.89290 4.91010 4.98511 5.12053 5.18858 5.24611 5.36529 5.51657 5.75814 5.83192 5.95555 6.00803 6.08029 6.47860 6.71069 6.77552 7.67409 8.21031 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.015746 B = 0.006907 C = 0.004999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.757937 B = 4052.867143 C = 5599.996129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.138 6.138 3 C -0.104 4.104 4 C -0.103 4.103 5 C -0.100 4.100 6 C -0.007 4.007 7 C -0.004 4.004 8 N -0.470 5.470 9 C -0.038 4.038 10 C -0.149 4.149 11 C -0.151 4.151 12 C 0.057 3.943 13 C -0.457 4.457 14 H 0.084 0.916 15 C 0.039 3.961 16 N -0.817 5.817 17 Si 0.976 3.024 18 H -0.257 1.257 19 H -0.265 1.265 20 H -0.260 1.260 21 C -0.088 4.088 22 C -0.134 4.134 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.130 0.870 26 H 0.142 0.858 27 H 0.120 0.880 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.293 0.707 32 H 0.118 0.882 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 -9.846 -0.426 10.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 S 0.103 5.897 3 C -0.217 4.217 4 C -0.126 4.126 5 C -0.121 4.121 6 C -0.010 4.010 7 C -0.142 4.142 8 N -0.178 5.178 9 C -0.199 4.199 10 C -0.169 4.169 11 C -0.177 4.177 12 C 0.053 3.947 13 C -0.486 4.486 14 H 0.102 0.898 15 C -0.178 4.178 16 N -0.442 5.442 17 Si 0.797 3.203 18 H -0.181 1.181 19 H -0.189 1.189 20 H -0.184 1.184 21 C -0.109 4.109 22 C -0.157 4.157 23 H 0.108 0.892 24 H 0.106 0.894 25 H 0.148 0.852 26 H 0.160 0.840 27 H 0.138 0.862 28 H 0.170 0.830 29 H 0.148 0.852 30 H 0.136 0.864 31 H 0.104 0.896 32 H 0.136 0.864 33 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.752 -11.257 0.131 11.393 hybrid contribution -1.581 2.300 -0.954 2.950 sum -3.333 -8.957 -0.823 9.592 Atomic orbital electron populations 1.23763 0.92119 1.08452 1.06287 1.85131 1.09487 1.01923 1.93173 1.21900 0.96376 0.97195 1.06197 1.20648 0.94904 0.95362 1.01723 1.21078 0.98758 0.92295 0.99962 1.18606 0.93483 0.90717 0.98188 1.19932 1.00710 0.93607 0.99953 1.67142 1.13766 1.17247 1.19602 1.22262 1.04412 0.88557 1.04651 1.21750 0.97074 1.00412 0.97659 1.21492 0.98010 0.96710 1.01447 1.18709 0.92319 0.92459 0.91238 1.19672 1.04916 0.99604 1.24371 0.89822 1.26752 0.99573 0.93749 0.97707 1.69793 1.28790 1.09935 1.35689 0.85264 0.77951 0.79227 0.77905 1.18119 1.18915 1.18373 1.21129 0.95839 0.95750 0.98164 1.21082 0.99063 0.92099 1.03461 0.89244 0.89352 0.85163 0.84016 0.86192 0.82979 0.85150 0.86406 0.89600 0.86385 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.14 113.37 1.04 -1.39 16 2 S -0.14 -3.46 22.56 -56.49 -1.27 -4.73 16 3 C -0.10 -3.39 6.13 22.79 0.14 -3.25 16 4 C -0.10 -3.53 9.75 22.26 0.22 -3.31 16 5 C -0.10 -4.02 9.63 22.40 0.22 -3.81 16 6 C -0.01 -0.31 5.26 -20.02 -0.11 -0.42 16 7 C 0.00 -0.23 6.42 42.40 0.27 0.04 16 8 N -0.47 -23.31 10.15 -183.00 -1.86 -25.16 16 9 C -0.04 -1.72 11.16 84.87 0.95 -0.77 16 10 C -0.15 -6.72 10.03 22.10 0.22 -6.50 16 11 C -0.15 -7.65 8.71 22.66 0.20 -7.46 16 12 C 0.06 3.02 5.54 -21.01 -0.12 2.90 16 13 C -0.46 -23.06 6.73 23.33 0.16 -22.90 16 14 H 0.08 4.17 6.46 -2.91 -0.02 4.15 16 15 C 0.04 1.81 5.26 85.28 0.45 2.26 16 16 N -0.82 -39.77 10.91 21.84 0.24 -39.54 16 17 Si 0.98 35.66 29.58 68.60 2.03 37.69 16 18 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 19 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 21 C -0.09 -3.69 7.81 22.40 0.17 -3.52 16 22 C -0.13 -4.59 9.33 22.26 0.21 -4.38 16 23 H 0.09 1.51 7.74 -2.39 -0.02 1.49 16 24 H 0.09 1.53 7.74 -2.39 -0.02 1.51 16 25 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 27 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 28 H 0.15 5.75 8.06 -2.91 -0.02 5.72 16 29 H 0.13 4.92 8.06 -2.91 -0.02 4.89 16 30 H 0.12 6.09 6.33 -2.91 -0.02 6.07 16 31 H 0.29 12.84 8.30 -92.71 -0.77 12.07 16 32 H 0.12 5.30 6.76 -2.91 -0.02 5.28 16 33 H 0.14 3.98 5.86 -2.91 -0.02 3.96 16 Total: -1.00 -58.55 294.98 4.28 -54.28 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 1.13 Total: 29.95 kcal Atomic # 6 Polarization: -56.50 SS G_CDS: 4.01 Total: -52.49 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -1.62 Total: -64.70 kcal Atomic # 14 Polarization: 35.66 SS G_CDS: 2.03 Total: 37.69 kcal Atomic # 16 Polarization: -3.46 SS G_CDS: -1.27 Total: -4.73 kcal Total: -58.55 4.28 -54.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239495108.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.944 kcal (2) G-P(sol) polarization free energy of solvation -58.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds