Wall clock time and date at job start Mon Mar 30 2020 00:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76206 * 102.99716 * 2 1 4 4 C 1.39160 * 119.95214 * 180.02562 * 3 2 1 5 5 C 1.37744 * 120.04250 * 180.02562 * 4 3 2 6 6 C 1.39532 * 119.95605 * 359.97438 * 5 4 3 7 7 C 1.48169 * 120.04404 * 180.02562 * 6 5 4 8 8 C 1.39995 * 119.61094 * 179.97438 * 7 6 5 9 9 C 1.38655 * 119.45728 * 180.02562 * 8 7 6 10 10 C 1.38320 * 118.70005 * 0.28627 * 9 8 7 11 11 C 1.40686 * 119.20178 * 359.45236 * 10 9 8 12 12 C 1.41350 * 119.76253 * 180.25678 * 11 10 9 13 13 H 1.07996 * 120.00249 * 0.29426 * 12 11 10 14 14 C 1.40006 * 119.99865 * 180.29656 * 12 11 10 15 15 N 1.30759 * 119.99760 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99985 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47473 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47121 * 120.00259 * 16 14 12 19 19 H 1.48509 * 109.47203 * 240.00083 * 16 14 12 20 20 N 1.32274 * 119.61333 * 0.02562 * 7 6 5 21 21 C 1.39537 * 119.91144 * 0.27915 * 6 5 4 22 22 C 1.37747 * 119.95165 * 359.42167 * 21 6 5 23 23 H 1.08992 * 109.47306 * 60.00107 * 1 2 3 24 24 H 1.08997 * 109.46853 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47222 * 299.99497 * 1 2 3 26 26 H 1.08000 * 119.98317 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.01915 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.27283 * 0.04908 * 8 7 6 29 29 H 1.08002 * 120.64646 * 180.02562 * 9 8 7 30 30 H 1.08006 * 120.39880 * 179.69922 * 10 9 8 31 31 H 0.97004 * 119.99501 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.02425 * 179.72884 * 21 6 5 33 33 H 1.07999 * 119.97776 * 180.27908 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5414 2.1227 -0.0005 5 6 3.8533 3.4644 0.0000 6 6 2.8336 4.4168 0.0005 7 6 3.1669 5.8605 0.0005 8 6 2.1366 6.8083 0.0005 9 6 2.4521 8.1584 0.0000 10 6 3.7846 8.5292 -0.0066 11 6 4.7751 7.5301 -0.0008 12 6 6.1405 7.8956 -0.0019 13 1 6.4203 8.9387 -0.0024 14 6 7.1303 6.9054 -0.0024 15 7 6.7915 5.6425 -0.0013 16 14 8.9347 7.3884 -0.0046 17 1 9.0509 8.8689 -0.0062 18 1 9.5952 6.8408 1.2074 19 1 9.5926 6.8395 -1.2176 20 7 4.4344 6.2387 -0.0005 21 6 1.4995 4.0078 0.0064 22 6 1.1918 2.6651 -0.0004 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 4.3305 1.3853 -0.0005 27 1 4.8865 3.7789 -0.0008 28 1 1.1044 6.4904 0.0013 29 1 1.6726 8.9060 0.0004 30 1 4.0615 9.5731 -0.0121 31 1 7.4773 4.9564 -0.0021 32 1 0.7088 4.7433 0.0113 33 1 0.1594 2.3481 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239495169.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:10 Heat of formation + Delta-G solvation = 52.675860 kcal Electronic energy + Delta-G solvation = -17251.971304 eV Core-core repulsion = 14561.324465 eV Total energy + Delta-G solvation = -2690.646838 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.97305 -37.61994 -33.75758 -31.91017 -30.97987 -30.37228 -29.11523 -28.45669 -25.70747 -23.18146 -22.38943 -20.89352 -20.27450 -17.64238 -17.30456 -16.06028 -15.09027 -14.84343 -14.77773 -14.35515 -13.85489 -13.81426 -13.58540 -13.20778 -12.95343 -12.84410 -12.38882 -12.20757 -12.02647 -11.27251 -11.16883 -11.04331 -10.82066 -10.72059 -10.40985 -10.08401 -9.93564 -9.71340 -9.27980 -8.53722 -8.24496 -7.77364 -7.68413 -6.88804 -6.48396 -4.58324 1.35951 1.64725 1.87747 2.51943 2.74368 2.99214 3.07049 3.10862 3.16161 3.90817 4.24149 4.78424 4.96661 4.98066 5.14638 5.27771 5.42670 5.54332 5.83939 5.87231 5.94098 6.07536 6.18618 6.38228 6.46683 6.60683 6.69013 6.75018 6.83355 7.09053 7.22237 7.28450 7.47054 7.53697 7.66541 7.96340 8.16828 8.60183 8.85189 9.97922 10.24419 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.004933 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.941640 B = 5674.730115 C = 6888.524210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.138 6.138 3 C -0.094 4.094 4 C -0.109 4.109 5 C -0.063 4.063 6 C -0.017 4.017 7 C 0.173 3.827 8 C -0.300 4.300 9 C -0.060 4.060 10 C -0.271 4.271 11 C 0.256 3.744 12 C -0.430 4.430 13 H 0.085 0.915 14 C 0.071 3.929 15 N -0.719 5.719 16 Si 0.908 3.092 17 H -0.261 1.261 18 H -0.273 1.273 19 H -0.273 1.273 20 N -0.467 5.467 21 C -0.095 4.095 22 C -0.142 4.142 23 H 0.082 0.918 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.122 0.878 27 H 0.160 0.840 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.272 0.728 32 H 0.126 0.874 33 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 -7.749 0.008 10.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.102 5.898 3 C -0.206 4.206 4 C -0.132 4.132 5 C -0.083 4.083 6 C -0.020 4.020 7 C 0.029 3.971 8 C -0.324 4.324 9 C -0.084 4.084 10 C -0.294 4.294 11 C 0.131 3.869 12 C -0.462 4.462 13 H 0.103 0.897 14 C -0.154 4.154 15 N -0.340 5.340 16 Si 0.732 3.268 17 H -0.184 1.184 18 H -0.198 1.198 19 H -0.198 1.198 20 N -0.179 5.179 21 C -0.116 4.116 22 C -0.166 4.166 23 H 0.101 0.899 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.140 0.860 27 H 0.178 0.822 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.118 0.882 31 H 0.084 0.916 32 H 0.144 0.856 33 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -6.086 -9.604 0.007 11.370 hybrid contribution -0.853 2.021 -0.001 2.193 sum -6.940 -7.583 0.007 10.279 Atomic orbital electron populations 1.23594 0.95277 1.06488 1.05557 1.85275 1.05975 1.05034 1.93495 1.21630 0.96894 0.95131 1.06972 1.20733 0.93645 0.96397 1.02419 1.21718 1.01932 0.90617 0.94053 1.18936 0.92326 0.92524 0.98166 1.19727 0.90776 0.90831 0.95794 1.21216 0.97772 0.93581 1.19791 1.20786 0.95603 0.94936 0.97052 1.21810 0.93343 0.99034 1.15200 1.18524 0.93349 0.86538 0.88527 1.19636 0.89292 0.94324 1.42909 0.89720 1.26032 1.01337 0.94635 0.93396 1.70074 1.34560 1.00390 1.28994 0.86263 0.81818 0.80103 0.78602 1.18449 1.19795 1.19799 1.68750 1.14601 1.17935 1.16650 1.21138 0.96219 0.94833 0.99373 1.20885 0.97463 0.93018 1.05188 0.89926 0.87899 0.89922 0.85986 0.82249 0.88453 0.88444 0.88211 0.91636 0.85621 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.15 101.05 0.92 -0.39 16 2 S -0.14 -1.83 22.56 -107.50 -2.43 -4.26 16 3 C -0.09 -1.52 6.12 -38.90 -0.24 -1.76 16 4 C -0.11 -1.93 9.78 -39.42 -0.39 -2.32 16 5 C -0.06 -1.30 9.56 -39.28 -0.38 -1.67 16 6 C -0.02 -0.35 5.88 -104.85 -0.62 -0.97 16 7 C 0.17 4.19 6.73 -82.94 -0.56 3.63 16 8 C -0.30 -6.70 9.47 -38.77 -0.37 -7.07 16 9 C -0.06 -1.32 10.15 -39.40 -0.40 -1.72 16 10 C -0.27 -6.57 9.83 -38.63 -0.38 -6.95 16 11 C 0.26 6.89 6.55 -85.01 -0.56 6.34 16 12 C -0.43 -11.26 9.14 -37.74 -0.34 -11.61 16 13 H 0.08 2.08 7.85 -52.49 -0.41 1.67 16 14 C 0.07 1.75 5.50 -17.35 -0.10 1.66 16 15 N -0.72 -18.28 11.10 55.55 0.62 -17.66 16 16 Si 0.91 18.20 29.56 -169.99 -5.02 13.17 16 17 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 N -0.47 -12.52 6.91 -7.69 -0.05 -12.57 16 21 C -0.09 -1.69 9.41 -39.28 -0.37 -2.05 16 22 C -0.14 -2.23 9.35 -39.42 -0.37 -2.60 16 23 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 24 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.73 7.74 -51.93 -0.40 0.33 16 26 H 0.12 1.95 8.06 -52.49 -0.42 1.53 16 27 H 0.16 3.62 7.16 -52.49 -0.38 3.25 16 28 H 0.10 1.88 6.16 -52.49 -0.32 1.56 16 29 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 30 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 31 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 32 H 0.13 2.01 6.16 -52.49 -0.32 1.69 16 33 H 0.12 1.48 5.86 -52.49 -0.31 1.17 16 LS Contribution 297.33 15.07 4.48 4.48 Total: -1.00 -28.21 297.33 -9.91 -38.11 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -3.37 Total: 6.22 kcal Atomic # 6 Polarization: -23.36 SS G_CDS: -4.13 Total: -27.49 kcal Atomic # 7 Polarization: -30.80 SS G_CDS: 0.56 Total: -30.23 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.17 kcal Atomic # 16 Polarization: -1.83 SS G_CDS: -2.43 Total: -4.26 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -28.21 -9.91 -38.11 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239495169.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.790 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds