Wall clock time and date at job start Mon Mar 30 2020 00:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.76206 * 102.99716 * 2 1 4 4 C 1.39160 * 119.95214 * 180.02562 * 3 2 1 5 5 C 1.37744 * 120.04250 * 180.02562 * 4 3 2 6 6 C 1.39532 * 119.95605 * 359.97438 * 5 4 3 7 7 C 1.48169 * 120.04404 * 180.02562 * 6 5 4 8 8 C 1.39995 * 119.61094 * 179.97438 * 7 6 5 9 9 C 1.38655 * 119.45728 * 180.02562 * 8 7 6 10 10 C 1.38320 * 118.70005 * 0.28627 * 9 8 7 11 11 C 1.40686 * 119.20178 * 359.45236 * 10 9 8 12 12 C 1.41350 * 119.76253 * 180.25678 * 11 10 9 13 13 H 1.07996 * 120.00249 * 0.29426 * 12 11 10 14 14 C 1.40006 * 119.99865 * 180.29656 * 12 11 10 15 15 N 1.30759 * 119.99760 * 359.97438 * 14 12 11 16 16 Si 1.86794 * 119.99985 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47473 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47121 * 120.00259 * 16 14 12 19 19 H 1.48509 * 109.47203 * 240.00083 * 16 14 12 20 20 N 1.32274 * 119.61333 * 0.02562 * 7 6 5 21 21 C 1.39537 * 119.91144 * 0.27915 * 6 5 4 22 22 C 1.37747 * 119.95165 * 359.42167 * 21 6 5 23 23 H 1.08992 * 109.47306 * 60.00107 * 1 2 3 24 24 H 1.08997 * 109.46853 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47222 * 299.99497 * 1 2 3 26 26 H 1.08000 * 119.98317 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.01915 * 180.02562 * 5 4 3 28 28 H 1.07995 * 120.27283 * 0.04908 * 8 7 6 29 29 H 1.08002 * 120.64646 * 180.02562 * 9 8 7 30 30 H 1.08006 * 120.39880 * 179.69922 * 10 9 8 31 31 H 0.97004 * 119.99501 * 179.97438 * 15 14 12 32 32 H 1.07995 * 120.02425 * 179.72884 * 21 6 5 33 33 H 1.07999 * 119.97776 * 180.27908 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5414 2.1227 -0.0005 5 6 3.8533 3.4644 0.0000 6 6 2.8336 4.4168 0.0005 7 6 3.1669 5.8605 0.0005 8 6 2.1366 6.8083 0.0005 9 6 2.4521 8.1584 0.0000 10 6 3.7846 8.5292 -0.0066 11 6 4.7751 7.5301 -0.0008 12 6 6.1405 7.8956 -0.0019 13 1 6.4203 8.9387 -0.0024 14 6 7.1303 6.9054 -0.0024 15 7 6.7915 5.6425 -0.0013 16 14 8.9347 7.3884 -0.0046 17 1 9.0509 8.8689 -0.0062 18 1 9.5952 6.8408 1.2074 19 1 9.5926 6.8395 -1.2176 20 7 4.4344 6.2387 -0.0005 21 6 1.4995 4.0078 0.0064 22 6 1.1918 2.6651 -0.0004 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 4.3305 1.3853 -0.0005 27 1 4.8865 3.7789 -0.0008 28 1 1.1044 6.4904 0.0013 29 1 1.6726 8.9060 0.0004 30 1 4.0615 9.5731 -0.0121 31 1 7.4773 4.9564 -0.0021 32 1 0.7088 4.7433 0.0113 33 1 0.1594 2.3481 -0.0004 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239495169.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:09 Heat of formation + Delta-G solvation = 39.066524 kcal Electronic energy + Delta-G solvation = -17252.561449 eV Core-core repulsion = 14561.324465 eV Total energy + Delta-G solvation = -2691.236983 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.56645 -39.23982 -35.57985 -33.50771 -32.55161 -31.94080 -30.55267 -29.52253 -27.53602 -24.76228 -23.95087 -22.54805 -21.90182 -19.38058 -18.66157 -17.63015 -16.58790 -16.49938 -16.38437 -15.69444 -15.26915 -15.13804 -14.76285 -14.59712 -14.39601 -14.37626 -13.89277 -13.53708 -13.34588 -12.88601 -12.79579 -12.66823 -12.44508 -12.31692 -11.96437 -11.65400 -11.36912 -11.15869 -10.87829 -10.04366 -9.91283 -9.51840 -9.42306 -8.30199 -8.18383 -6.51884 -0.13939 0.48804 0.60747 1.01247 1.24870 1.40244 1.52578 1.52923 1.55006 2.22175 2.67639 3.02186 3.71684 3.93082 3.98394 4.01805 4.32059 4.32209 4.34416 4.46181 4.58874 4.70555 4.77777 4.85921 4.92630 4.95389 5.08797 5.17924 5.26006 5.37445 5.56727 5.61770 5.79652 5.87786 5.98867 6.18885 6.27373 6.73872 6.95127 8.14094 8.44175 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.022778 B = 0.004933 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.941640 B = 5674.730115 C = 6888.524210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.145 6.145 3 C -0.090 4.090 4 C -0.117 4.117 5 C -0.083 4.083 6 C -0.054 4.054 7 C 0.151 3.849 8 C -0.300 4.300 9 C -0.057 4.057 10 C -0.296 4.296 11 C 0.221 3.779 12 C -0.469 4.469 13 H 0.088 0.912 14 C 0.026 3.974 15 N -0.752 5.752 16 Si 0.986 3.014 17 H -0.255 1.255 18 H -0.267 1.267 19 H -0.267 1.267 20 N -0.499 5.499 21 C -0.088 4.088 22 C -0.134 4.134 23 H 0.094 0.906 24 H 0.129 0.871 25 H 0.094 0.906 26 H 0.131 0.869 27 H 0.126 0.874 28 H 0.132 0.868 29 H 0.138 0.862 30 H 0.110 0.890 31 H 0.278 0.722 32 H 0.146 0.854 33 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -9.038 0.009 13.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 S 0.096 5.904 3 C -0.203 4.203 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.057 4.057 7 C 0.008 3.992 8 C -0.323 4.323 9 C -0.081 4.081 10 C -0.318 4.318 11 C 0.095 3.905 12 C -0.500 4.500 13 H 0.106 0.894 14 C -0.195 4.195 15 N -0.374 5.374 16 Si 0.806 3.194 17 H -0.178 1.178 18 H -0.192 1.192 19 H -0.192 1.192 20 N -0.213 5.213 21 C -0.108 4.108 22 C -0.157 4.157 23 H 0.112 0.888 24 H 0.147 0.853 25 H 0.112 0.888 26 H 0.149 0.851 27 H 0.144 0.856 28 H 0.150 0.850 29 H 0.155 0.845 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.500 -10.904 0.009 13.826 hybrid contribution -0.342 2.232 -0.001 2.258 sum -8.842 -8.672 0.008 12.385 Atomic orbital electron populations 1.23793 0.91289 1.08630 1.06679 1.85401 1.10281 1.01923 1.92800 1.21947 0.96259 0.97600 1.04450 1.20797 0.95248 0.95264 1.02660 1.21503 1.00573 0.92217 0.96035 1.19005 0.94147 0.91080 1.01449 1.20387 0.90622 0.93033 0.95149 1.21639 0.99049 0.93432 1.18165 1.21230 0.95657 0.95954 0.95267 1.22011 0.94210 0.99153 1.16450 1.19030 0.94575 0.87521 0.89343 1.19969 0.90109 0.94988 1.44933 0.89402 1.26926 1.05752 0.94318 0.92526 1.70193 1.36177 1.01412 1.29609 0.85106 0.75694 0.79858 0.78719 1.17844 1.19185 1.19198 1.68734 1.16413 1.18138 1.17986 1.21334 0.94876 0.96410 0.98198 1.21298 0.99239 0.91873 1.03294 0.88760 0.85310 0.88754 0.85091 0.85572 0.85006 0.84462 0.87182 0.91163 0.83615 0.82469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.15 113.37 1.04 -0.83 16 2 S -0.15 -3.41 22.56 -56.49 -1.27 -4.69 16 3 C -0.09 -2.74 6.12 22.71 0.14 -2.60 16 4 C -0.12 -4.18 9.78 22.37 0.22 -3.96 16 5 C -0.08 -3.59 9.56 22.47 0.21 -3.37 16 6 C -0.05 -2.33 5.88 -20.01 -0.12 -2.44 16 7 C 0.15 7.55 6.73 42.14 0.28 7.84 16 8 C -0.30 -13.18 9.47 22.80 0.22 -12.96 16 9 C -0.06 -2.49 10.15 22.39 0.23 -2.26 16 10 C -0.30 -14.71 9.83 22.89 0.23 -14.48 16 11 C 0.22 12.51 6.55 40.24 0.26 12.77 16 12 C -0.47 -25.82 9.14 23.46 0.21 -25.60 16 13 H 0.09 4.54 7.85 -2.91 -0.02 4.51 16 14 C 0.03 1.36 5.50 85.28 0.47 1.83 16 15 N -0.75 -40.57 11.10 21.83 0.24 -40.33 16 16 Si 0.99 38.66 29.56 68.60 2.03 40.69 16 17 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 18 H -0.27 -10.11 7.11 99.48 0.71 -9.40 16 19 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 20 N -0.50 -28.27 6.91 -178.23 -1.23 -29.50 16 21 C -0.09 -2.95 9.41 22.47 0.21 -2.73 16 22 C -0.13 -3.76 9.35 22.37 0.21 -3.55 16 23 H 0.09 1.16 7.74 -2.39 -0.02 1.14 16 24 H 0.13 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.09 1.16 7.74 -2.39 -0.02 1.14 16 26 H 0.13 4.29 8.06 -2.91 -0.02 4.27 16 27 H 0.13 6.27 7.16 -2.91 -0.02 6.25 16 28 H 0.13 4.73 6.16 -2.91 -0.02 4.71 16 29 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 30 H 0.11 5.03 8.06 -2.91 -0.02 5.01 16 31 H 0.28 13.55 8.29 -92.71 -0.77 12.78 16 32 H 0.15 4.19 6.16 -2.91 -0.02 4.17 16 33 H 0.16 3.12 5.86 -2.91 -0.02 3.11 16 Total: -1.00 -65.62 297.33 4.70 -60.92 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 1.13 Total: 25.26 kcal Atomic # 6 Polarization: -56.16 SS G_CDS: 3.81 Total: -52.35 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -0.99 Total: -69.82 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.27 Total: -4.69 kcal Total: -65.62 4.70 -60.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239495169.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.985 kcal (2) G-P(sol) polarization free energy of solvation -65.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds