Wall clock time and date at job start Mon Mar 30 2020 00:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76206 * 102.99968 * 2 1 4 4 C 1.39117 * 119.95873 * 180.02562 * 3 2 1 5 5 C 1.37784 * 120.04391 * 180.02562 * 4 3 2 6 6 C 1.39475 * 119.95521 * 359.97438 * 5 4 3 7 7 C 1.48252 * 120.03886 * 179.97438 * 6 5 4 8 8 C 1.38986 * 119.61839 * 180.02562 * 7 6 5 9 9 C 1.40813 * 118.75541 * 179.97438 * 8 7 6 10 10 C 1.41536 * 120.98256 * 180.26908 * 9 8 7 11 11 H 1.07993 * 120.00189 * 155.86539 * 10 9 8 12 12 C 1.40046 * 119.99987 * 335.87017 * 10 9 8 13 13 N 1.30737 * 120.00076 * 343.27027 * 12 10 9 14 14 Si 1.86799 * 119.99894 * 163.26774 * 12 10 9 15 15 H 1.48502 * 109.46907 * 90.00373 * 14 12 10 16 16 H 1.48503 * 109.47003 * 209.99749 * 14 12 10 17 17 H 1.48493 * 109.47404 * 329.99979 * 14 12 10 18 18 C 1.41156 * 118.03553 * 359.97438 * 9 8 7 19 19 C 1.37706 * 119.08943 * 0.02562 * 18 9 8 20 20 N 1.31941 * 121.16319 * 359.97438 * 19 18 9 21 21 C 1.39472 * 119.91688 * 0.25360 * 6 5 4 22 22 C 1.37785 * 119.95685 * 359.51292 * 21 6 5 23 23 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47157 * 299.99495 * 1 2 3 25 25 H 1.08997 * 109.47762 * 59.99361 * 1 2 3 26 26 H 1.08005 * 119.98218 * 359.97438 * 4 3 2 27 27 H 1.08001 * 120.02431 * 180.02562 * 5 4 3 28 28 H 1.07996 * 120.62387 * 0.02562 * 8 7 6 29 29 H 0.96993 * 120.00358 * 180.02562 * 13 12 10 30 30 H 1.08001 * 120.45649 * 179.97438 * 18 9 8 31 31 H 1.08000 * 119.41784 * 180.02562 * 19 18 9 32 32 H 1.07997 * 120.02288 * 179.72350 * 21 6 5 33 33 H 1.08004 * 119.97600 * 180.20853 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5410 2.1227 -0.0005 5 6 3.8529 3.4648 0.0000 6 6 2.8335 4.4167 0.0005 7 6 3.1670 5.8612 0.0017 8 6 2.1443 6.8023 0.0028 9 6 2.4817 8.1694 0.0044 10 6 1.4782 9.1675 0.0112 11 1 1.6990 10.1526 0.3949 12 6 0.1990 8.8777 -0.4795 13 7 0.0103 7.8251 -1.2316 14 14 -1.2378 9.9951 -0.0593 15 1 -1.3549 11.0590 -1.0888 16 1 -2.4908 9.1988 -0.0258 17 1 -1.0099 10.6158 1.2703 18 6 3.8503 8.5150 0.0054 19 6 4.7941 7.5122 0.0042 20 7 4.4398 6.2412 0.0027 21 6 1.5001 4.0079 0.0059 22 6 1.1921 2.6649 0.0005 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 4.3301 1.3853 -0.0005 27 1 4.8861 3.7794 -0.0008 28 1 1.1102 6.4910 0.0032 29 1 -0.8756 7.6246 -1.5718 30 1 4.1532 9.5517 0.0063 31 1 5.8427 7.7706 0.0054 32 1 0.7094 4.7435 0.0108 33 1 0.1596 2.3481 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239496413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:12 Heat of formation + Delta-G solvation = 40.703553 kcal Electronic energy + Delta-G solvation = -17187.281561 eV Core-core repulsion = 14496.115565 eV Total energy + Delta-G solvation = -2691.165997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.08793 -37.73383 -34.23616 -32.02426 -31.02888 -30.54164 -28.93181 -28.15550 -26.05026 -23.16495 -22.55924 -21.07332 -20.30908 -17.82424 -17.26152 -15.91387 -15.39864 -14.92846 -14.66512 -14.40971 -13.87789 -13.85540 -13.74568 -13.25877 -13.00098 -12.95264 -12.68581 -12.30361 -12.10885 -11.53338 -11.38232 -11.16781 -10.99031 -10.75819 -10.38618 -10.11241 -9.93385 -9.65549 -9.42145 -8.60693 -8.15125 -8.06308 -7.83163 -6.98892 -6.83548 -4.68835 1.30839 1.62604 1.80249 2.48912 2.70013 2.79649 2.96343 3.00382 3.17009 3.77955 4.14412 4.63696 4.97300 4.99571 5.11799 5.24081 5.29953 5.55506 5.60259 5.80356 5.88585 5.99431 6.12651 6.37264 6.52888 6.61922 6.71274 6.73578 6.88168 6.99989 7.15191 7.22721 7.34588 7.39783 7.76145 8.00617 8.34122 8.62237 8.64643 9.47978 9.96978 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.005041 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.939078 B = 5553.181619 C = 6879.481329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.139 6.139 3 C -0.096 4.096 4 C -0.107 4.107 5 C -0.078 4.078 6 C -0.010 4.010 7 C 0.133 3.867 8 C -0.188 4.188 9 C 0.125 3.875 10 C -0.454 4.454 11 H 0.083 0.917 12 C 0.078 3.922 13 N -0.786 5.786 14 Si 0.912 3.088 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.259 1.259 18 C -0.272 4.272 19 C 0.104 3.896 20 N -0.565 5.565 21 C -0.089 4.089 22 C -0.135 4.135 23 H 0.103 0.897 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.137 0.863 28 H 0.132 0.868 29 H 0.284 0.716 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.134 0.866 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.049 -9.549 1.605 9.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.102 5.898 3 C -0.209 4.209 4 C -0.130 4.130 5 C -0.098 4.098 6 C -0.012 4.012 7 C 0.003 3.997 8 C -0.210 4.210 9 C 0.117 3.883 10 C -0.485 4.485 11 H 0.101 0.899 12 C -0.142 4.142 13 N -0.411 5.411 14 Si 0.735 3.265 15 H -0.193 1.193 16 H -0.199 1.199 17 H -0.183 1.183 18 C -0.295 4.295 19 C -0.051 4.051 20 N -0.279 5.279 21 C -0.109 4.109 22 C -0.158 4.158 23 H 0.122 0.878 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.140 0.860 27 H 0.155 0.845 28 H 0.150 0.850 29 H 0.095 0.905 30 H 0.120 0.880 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.934 -11.390 1.467 11.522 hybrid contribution -2.227 2.392 0.002 3.268 sum -3.161 -8.998 1.468 9.650 Atomic orbital electron populations 1.23609 0.95015 1.06555 1.05743 1.85205 1.06289 1.04826 1.93502 1.21586 0.96788 0.95291 1.07216 1.20633 0.93811 0.96053 1.02473 1.21248 1.00252 0.91039 0.97264 1.18868 0.92542 0.92185 0.97654 1.19253 0.89797 0.90999 0.99640 1.22281 0.99229 0.92906 1.06608 1.17778 0.91674 0.92516 0.86348 1.19621 0.94168 0.98718 1.35994 0.89890 1.25985 1.00405 0.95550 0.92256 1.69756 1.24696 1.24485 1.22191 0.86250 0.79504 0.80358 0.80366 1.19250 1.19881 1.18258 1.21925 0.94090 0.98531 1.14953 1.21819 0.97911 0.88401 0.97006 1.67265 1.18824 1.19275 1.22579 1.21271 0.96503 0.95068 0.98106 1.20966 0.97662 0.92990 1.04160 0.87842 0.89836 0.89789 0.85989 0.84488 0.85045 0.90464 0.87971 0.85923 0.84812 0.86278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.14 101.05 0.92 -0.43 16 2 S -0.14 -1.80 22.56 -107.50 -2.43 -4.23 16 3 C -0.10 -1.53 6.12 -38.93 -0.24 -1.77 16 4 C -0.11 -1.75 9.78 -39.42 -0.39 -2.13 16 5 C -0.08 -1.45 9.56 -39.29 -0.38 -1.83 16 6 C -0.01 -0.20 5.88 -104.86 -0.62 -0.82 16 7 C 0.13 3.20 6.73 -83.04 -0.56 2.64 16 8 C -0.19 -4.75 8.14 -38.33 -0.31 -5.07 16 9 C 0.12 3.23 5.60 -106.56 -0.60 2.64 16 10 C -0.45 -11.50 9.12 -37.65 -0.34 -11.84 16 11 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 12 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16 13 N -0.79 -19.14 10.93 55.55 0.61 -18.54 16 14 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16 15 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 18 C -0.27 -6.50 9.90 -38.67 -0.38 -6.88 16 19 C 0.10 2.37 11.15 -17.70 -0.20 2.17 16 20 N -0.56 -13.44 9.39 -9.95 -0.09 -13.53 16 21 C -0.09 -1.69 9.40 -39.29 -0.37 -2.06 16 22 C -0.13 -2.19 9.35 -39.42 -0.37 -2.55 16 23 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16 24 H 0.08 0.77 7.74 -51.92 -0.40 0.37 16 25 H 0.08 0.79 7.74 -51.93 -0.40 0.39 16 26 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16 27 H 0.14 2.53 7.52 -52.49 -0.39 2.14 16 28 H 0.13 3.31 4.32 -52.49 -0.23 3.08 16 29 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16 30 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 31 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16 32 H 0.13 2.58 6.16 -52.49 -0.32 2.26 16 33 H 0.12 1.62 5.86 -52.48 -0.31 1.31 16 LS Contribution 296.72 15.07 4.47 4.47 Total: -1.00 -27.36 296.72 -9.68 -37.04 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -3.30 Total: 8.40 kcal Atomic # 6 Polarization: -22.27 SS G_CDS: -3.91 Total: -26.18 kcal Atomic # 7 Polarization: -32.58 SS G_CDS: 0.51 Total: -32.07 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.43 Total: -4.23 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.36 -9.68 -37.04 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239496413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.739 kcal (2) G-P(sol) polarization free energy of solvation -27.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds