Wall clock time and date at job start Mon Mar 30 2020 00:53:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81394 * 1
3 3 C 1.76206 * 102.99968 * 2 1
4 4 C 1.39117 * 119.95873 * 180.02562 * 3 2 1
5 5 C 1.37784 * 120.04391 * 180.02562 * 4 3 2
6 6 C 1.39475 * 119.95521 * 359.97438 * 5 4 3
7 7 C 1.48252 * 120.03886 * 179.97438 * 6 5 4
8 8 C 1.38986 * 119.61839 * 180.02562 * 7 6 5
9 9 C 1.40813 * 118.75541 * 179.97438 * 8 7 6
10 10 C 1.41536 * 120.98256 * 180.26908 * 9 8 7
11 11 H 1.07993 * 120.00189 * 155.86539 * 10 9 8
12 12 C 1.40046 * 119.99987 * 335.87017 * 10 9 8
13 13 N 1.30737 * 120.00076 * 343.27027 * 12 10 9
14 14 Si 1.86799 * 119.99894 * 163.26774 * 12 10 9
15 15 H 1.48502 * 109.46907 * 90.00373 * 14 12 10
16 16 H 1.48503 * 109.47003 * 209.99749 * 14 12 10
17 17 H 1.48493 * 109.47404 * 329.99979 * 14 12 10
18 18 C 1.41156 * 118.03553 * 359.97438 * 9 8 7
19 19 C 1.37706 * 119.08943 * 0.02562 * 18 9 8
20 20 N 1.31941 * 121.16319 * 359.97438 * 19 18 9
21 21 C 1.39472 * 119.91688 * 0.25360 * 6 5 4
22 22 C 1.37785 * 119.95685 * 359.51292 * 21 6 5
23 23 H 1.09003 * 109.47501 * 180.02562 * 1 2 3
24 24 H 1.09005 * 109.47157 * 299.99495 * 1 2 3
25 25 H 1.08997 * 109.47762 * 59.99361 * 1 2 3
26 26 H 1.08005 * 119.98218 * 359.97438 * 4 3 2
27 27 H 1.08001 * 120.02431 * 180.02562 * 5 4 3
28 28 H 1.07996 * 120.62387 * 0.02562 * 8 7 6
29 29 H 0.96993 * 120.00358 * 180.02562 * 13 12 10
30 30 H 1.08001 * 120.45649 * 179.97438 * 18 9 8
31 31 H 1.08000 * 119.41784 * 180.02562 * 19 18 9
32 32 H 1.07997 * 120.02288 * 179.72350 * 21 6 5
33 33 H 1.08004 * 119.97600 * 180.20853 * 22 21 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8139 0.0000 0.0000
3 6 2.2103 1.7169 0.0000
4 6 3.5410 2.1227 -0.0005
5 6 3.8529 3.4648 0.0000
6 6 2.8335 4.4167 0.0005
7 6 3.1670 5.8612 0.0017
8 6 2.1443 6.8023 0.0028
9 6 2.4817 8.1694 0.0044
10 6 1.4782 9.1675 0.0112
11 1 1.6990 10.1526 0.3949
12 6 0.1990 8.8777 -0.4795
13 7 0.0103 7.8251 -1.2316
14 14 -1.2378 9.9951 -0.0593
15 1 -1.3549 11.0590 -1.0888
16 1 -2.4908 9.1988 -0.0258
17 1 -1.0099 10.6158 1.2703
18 6 3.8503 8.5150 0.0054
19 6 4.7941 7.5122 0.0042
20 7 4.4398 6.2412 0.0027
21 6 1.5001 4.0079 0.0059
22 6 1.1921 2.6649 0.0005
23 1 -0.3634 -1.0277 0.0005
24 1 -0.3634 0.5138 0.8901
25 1 -0.3634 0.5139 -0.8899
26 1 4.3301 1.3853 -0.0005
27 1 4.8861 3.7794 -0.0008
28 1 1.1102 6.4910 0.0032
29 1 -0.8756 7.6246 -1.5718
30 1 4.1532 9.5517 0.0063
31 1 5.8427 7.7706 0.0054
32 1 0.7094 4.7435 0.0108
33 1 0.1596 2.3481 0.0012
RHF calculation, no. of doubly occupied orbitals= 46
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001239496413.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:53:12
Heat of formation + Delta-G solvation = 40.703553 kcal
Electronic energy + Delta-G solvation = -17187.281561 eV
Core-core repulsion = 14496.115565 eV
Total energy + Delta-G solvation = -2691.165997 eV
No. of doubly occupied orbitals = 46
Molecular weight
(most abundant/longest-lived isotopes) = 271.073 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-39.08793 -37.73383 -34.23616 -32.02426 -31.02888 -30.54164 -28.93181 -28.15550
-26.05026 -23.16495 -22.55924 -21.07332 -20.30908 -17.82424 -17.26152 -15.91387
-15.39864 -14.92846 -14.66512 -14.40971 -13.87789 -13.85540 -13.74568 -13.25877
-13.00098 -12.95264 -12.68581 -12.30361 -12.10885 -11.53338 -11.38232 -11.16781
-10.99031 -10.75819 -10.38618 -10.11241 -9.93385 -9.65549 -9.42145 -8.60693
-8.15125 -8.06308 -7.83163 -6.98892 -6.83548 -4.68835 1.30839 1.62604
1.80249 2.48912 2.70013 2.79649 2.96343 3.00382 3.17009 3.77955
4.14412 4.63696 4.97300 4.99571 5.11799 5.24081 5.29953 5.55506
5.60259 5.80356 5.88585 5.99431 6.12651 6.37264 6.52888 6.61922
6.71274 6.73578 6.88168 6.99989 7.15191 7.22721 7.34588 7.39783
7.76145 8.00617 8.34122 8.62237 8.64643 9.47978 9.96978
Molecular weight = 271.07amu
Principal moments of inertia in cm(-1)
A = 0.019868 B = 0.005041 C = 0.004069
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1408.939078 B = 5553.181619 C = 6879.481329
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 S -0.139 6.139
3 C -0.096 4.096
4 C -0.107 4.107
5 C -0.078 4.078
6 C -0.010 4.010
7 C 0.133 3.867
8 C -0.188 4.188
9 C 0.125 3.875
10 C -0.454 4.454
11 H 0.083 0.917
12 C 0.078 3.922
13 N -0.786 5.786
14 Si 0.912 3.088
15 H -0.267 1.267
16 H -0.274 1.274
17 H -0.259 1.259
18 C -0.272 4.272
19 C 0.104 3.896
20 N -0.565 5.565
21 C -0.089 4.089
22 C -0.135 4.135
23 H 0.103 0.897
24 H 0.083 0.917
25 H 0.083 0.917
26 H 0.122 0.878
27 H 0.137 0.863
28 H 0.132 0.868
29 H 0.284 0.716
30 H 0.102 0.898
31 H 0.123 0.877
32 H 0.134 0.866
33 H 0.119 0.881
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.049 -9.549 1.605 9.897
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.309 4.309
2 S 0.102 5.898
3 C -0.209 4.209
4 C -0.130 4.130
5 C -0.098 4.098
6 C -0.012 4.012
7 C 0.003 3.997
8 C -0.210 4.210
9 C 0.117 3.883
10 C -0.485 4.485
11 H 0.101 0.899
12 C -0.142 4.142
13 N -0.411 5.411
14 Si 0.735 3.265
15 H -0.193 1.193
16 H -0.199 1.199
17 H -0.183 1.183
18 C -0.295 4.295
19 C -0.051 4.051
20 N -0.279 5.279
21 C -0.109 4.109
22 C -0.158 4.158
23 H 0.122 0.878
24 H 0.102 0.898
25 H 0.102 0.898
26 H 0.140 0.860
27 H 0.155 0.845
28 H 0.150 0.850
29 H 0.095 0.905
30 H 0.120 0.880
31 H 0.141 0.859
32 H 0.152 0.848
33 H 0.137 0.863
Dipole moment (debyes) X Y Z Total
from point charges -0.934 -11.390 1.467 11.522
hybrid contribution -2.227 2.392 0.002 3.268
sum -3.161 -8.998 1.468 9.650
Atomic orbital electron populations
1.23609 0.95015 1.06555 1.05743 1.85205 1.06289 1.04826 1.93502
1.21586 0.96788 0.95291 1.07216 1.20633 0.93811 0.96053 1.02473
1.21248 1.00252 0.91039 0.97264 1.18868 0.92542 0.92185 0.97654
1.19253 0.89797 0.90999 0.99640 1.22281 0.99229 0.92906 1.06608
1.17778 0.91674 0.92516 0.86348 1.19621 0.94168 0.98718 1.35994
0.89890 1.25985 1.00405 0.95550 0.92256 1.69756 1.24696 1.24485
1.22191 0.86250 0.79504 0.80358 0.80366 1.19250 1.19881 1.18258
1.21925 0.94090 0.98531 1.14953 1.21819 0.97911 0.88401 0.97006
1.67265 1.18824 1.19275 1.22579 1.21271 0.96503 0.95068 0.98106
1.20966 0.97662 0.92990 1.04160 0.87842 0.89836 0.89789 0.85989
0.84488 0.85045 0.90464 0.87971 0.85923 0.84812 0.86278
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.35 9.14 101.05 0.92 -0.43 16
2 S -0.14 -1.80 22.56 -107.50 -2.43 -4.23 16
3 C -0.10 -1.53 6.12 -38.93 -0.24 -1.77 16
4 C -0.11 -1.75 9.78 -39.42 -0.39 -2.13 16
5 C -0.08 -1.45 9.56 -39.29 -0.38 -1.83 16
6 C -0.01 -0.20 5.88 -104.86 -0.62 -0.82 16
7 C 0.13 3.20 6.73 -83.04 -0.56 2.64 16
8 C -0.19 -4.75 8.14 -38.33 -0.31 -5.07 16
9 C 0.12 3.23 5.60 -106.56 -0.60 2.64 16
10 C -0.45 -11.50 9.12 -37.65 -0.34 -11.84 16
11 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16
12 C 0.08 1.84 5.20 -17.34 -0.09 1.75 16
13 N -0.79 -19.14 10.93 55.55 0.61 -18.54 16
14 Si 0.91 17.60 29.59 -169.99 -5.03 12.57 16
15 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16
16 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16
17 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16
18 C -0.27 -6.50 9.90 -38.67 -0.38 -6.88 16
19 C 0.10 2.37 11.15 -17.70 -0.20 2.17 16
20 N -0.56 -13.44 9.39 -9.95 -0.09 -13.53 16
21 C -0.09 -1.69 9.40 -39.29 -0.37 -2.06 16
22 C -0.13 -2.19 9.35 -39.42 -0.37 -2.55 16
23 H 0.10 0.77 8.14 -51.92 -0.42 0.35 16
24 H 0.08 0.77 7.74 -51.92 -0.40 0.37 16
25 H 0.08 0.79 7.74 -51.93 -0.40 0.39 16
26 H 0.12 1.73 8.06 -52.48 -0.42 1.30 16
27 H 0.14 2.53 7.52 -52.49 -0.39 2.14 16
28 H 0.13 3.31 4.32 -52.49 -0.23 3.08 16
29 H 0.28 6.25 8.29 -40.82 -0.34 5.91 16
30 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16
31 H 0.12 2.35 8.06 -52.49 -0.42 1.93 16
32 H 0.13 2.58 6.16 -52.49 -0.32 2.26 16
33 H 0.12 1.62 5.86 -52.48 -0.31 1.31 16
LS Contribution 296.72 15.07 4.47 4.47
Total: -1.00 -27.36 296.72 -9.68 -37.04
By element:
Atomic # 1 Polarization: 11.69 SS G_CDS: -3.30 Total: 8.40 kcal
Atomic # 6 Polarization: -22.27 SS G_CDS: -3.91 Total: -26.18 kcal
Atomic # 7 Polarization: -32.58 SS G_CDS: 0.51 Total: -32.07 kcal
Atomic # 14 Polarization: 17.60 SS G_CDS: -5.03 Total: 12.57 kcal
Atomic # 16 Polarization: -1.80 SS G_CDS: -2.43 Total: -4.23 kcal
Total LS contribution 4.47 Total: 4.47 kcal
Total: -27.36 -9.68 -37.04 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001239496413.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 77.739 kcal
(2) G-P(sol) polarization free energy of solvation -27.359 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.381 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.677 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.036 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.704 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds