Wall clock time and date at job start Mon Mar 30 2020 00:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76206 * 102.99968 * 2 1 4 4 C 1.39117 * 119.95873 * 180.02562 * 3 2 1 5 5 C 1.37784 * 120.04391 * 180.02562 * 4 3 2 6 6 C 1.39475 * 119.95521 * 359.97438 * 5 4 3 7 7 C 1.48252 * 120.03886 * 179.97438 * 6 5 4 8 8 C 1.38986 * 119.61839 * 180.02562 * 7 6 5 9 9 C 1.40813 * 118.75541 * 179.97438 * 8 7 6 10 10 C 1.41536 * 120.98256 * 180.26908 * 9 8 7 11 11 H 1.07993 * 120.00189 * 155.86539 * 10 9 8 12 12 C 1.40046 * 119.99987 * 335.87017 * 10 9 8 13 13 N 1.30737 * 120.00076 * 343.27027 * 12 10 9 14 14 Si 1.86799 * 119.99894 * 163.26774 * 12 10 9 15 15 H 1.48502 * 109.46907 * 90.00373 * 14 12 10 16 16 H 1.48503 * 109.47003 * 209.99749 * 14 12 10 17 17 H 1.48493 * 109.47404 * 329.99979 * 14 12 10 18 18 C 1.41156 * 118.03553 * 359.97438 * 9 8 7 19 19 C 1.37706 * 119.08943 * 0.02562 * 18 9 8 20 20 N 1.31941 * 121.16319 * 359.97438 * 19 18 9 21 21 C 1.39472 * 119.91688 * 0.25360 * 6 5 4 22 22 C 1.37785 * 119.95685 * 359.51292 * 21 6 5 23 23 H 1.09003 * 109.47501 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47157 * 299.99495 * 1 2 3 25 25 H 1.08997 * 109.47762 * 59.99361 * 1 2 3 26 26 H 1.08005 * 119.98218 * 359.97438 * 4 3 2 27 27 H 1.08001 * 120.02431 * 180.02562 * 5 4 3 28 28 H 1.07996 * 120.62387 * 0.02562 * 8 7 6 29 29 H 0.96993 * 120.00358 * 180.02562 * 13 12 10 30 30 H 1.08001 * 120.45649 * 179.97438 * 18 9 8 31 31 H 1.08000 * 119.41784 * 180.02562 * 19 18 9 32 32 H 1.07997 * 120.02288 * 179.72350 * 21 6 5 33 33 H 1.08004 * 119.97600 * 180.20853 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5410 2.1227 -0.0005 5 6 3.8529 3.4648 0.0000 6 6 2.8335 4.4167 0.0005 7 6 3.1670 5.8612 0.0017 8 6 2.1443 6.8023 0.0028 9 6 2.4817 8.1694 0.0044 10 6 1.4782 9.1675 0.0112 11 1 1.6990 10.1526 0.3949 12 6 0.1990 8.8777 -0.4795 13 7 0.0103 7.8251 -1.2316 14 14 -1.2378 9.9951 -0.0593 15 1 -1.3549 11.0590 -1.0888 16 1 -2.4908 9.1988 -0.0258 17 1 -1.0099 10.6158 1.2703 18 6 3.8503 8.5150 0.0054 19 6 4.7941 7.5122 0.0042 20 7 4.4398 6.2412 0.0027 21 6 1.5001 4.0079 0.0059 22 6 1.1921 2.6649 0.0005 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 4.3301 1.3853 -0.0005 27 1 4.8861 3.7794 -0.0008 28 1 1.1102 6.4910 0.0032 29 1 -0.8756 7.6246 -1.5718 30 1 4.1532 9.5517 0.0063 31 1 5.8427 7.7706 0.0054 32 1 0.7094 4.7435 0.0108 33 1 0.1596 2.3481 0.0012 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239496413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:11 Heat of formation + Delta-G solvation = 27.968020 kcal Electronic energy + Delta-G solvation = -17187.833816 eV Core-core repulsion = 14496.115565 eV Total energy + Delta-G solvation = -2691.718251 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.69282 -39.32734 -36.05482 -33.59852 -32.60933 -32.10122 -30.08536 -29.49569 -27.90421 -24.74185 -24.13491 -22.68460 -21.96769 -19.49393 -18.60890 -17.56369 -16.95174 -16.49660 -16.26210 -15.77888 -15.36621 -15.25046 -14.82876 -14.60757 -14.48291 -14.44106 -14.29265 -13.59771 -13.37005 -13.19040 -13.01170 -12.69824 -12.53229 -12.18627 -11.99991 -11.71296 -11.31359 -11.20419 -10.96795 -10.02325 -9.97331 -9.90960 -9.39694 -8.74079 -8.17373 -6.59790 -0.19728 0.42368 0.59113 0.96388 1.07232 1.37520 1.47881 1.49655 1.56170 2.16187 2.58667 2.91301 3.58545 3.74497 3.88299 3.96016 4.26657 4.28039 4.30699 4.45053 4.49305 4.69729 4.81231 4.86370 4.92472 4.95695 5.06282 5.18166 5.23913 5.26069 5.45387 5.48649 5.73743 5.89095 5.91618 6.17089 6.47869 6.75706 6.76820 7.64400 8.21210 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.019868 B = 0.005041 C = 0.004069 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.939078 B = 5553.181619 C = 6879.481329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.131 6.131 3 C -0.093 4.093 4 C -0.107 4.107 5 C -0.080 4.080 6 C -0.049 4.049 7 C 0.131 3.869 8 C -0.217 4.217 9 C 0.095 3.905 10 C -0.487 4.487 11 H 0.084 0.916 12 C 0.040 3.960 13 N -0.813 5.813 14 Si 0.986 3.014 15 H -0.260 1.260 16 H -0.263 1.263 17 H -0.258 1.258 18 C -0.291 4.291 19 C 0.102 3.898 20 N -0.575 5.575 21 C -0.096 4.096 22 C -0.132 4.132 23 H 0.131 0.869 24 H 0.090 0.910 25 H 0.089 0.911 26 H 0.147 0.853 27 H 0.133 0.867 28 H 0.125 0.875 29 H 0.293 0.707 30 H 0.116 0.884 31 H 0.159 0.841 32 H 0.121 0.879 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.227 -11.278 1.734 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.111 5.889 3 C -0.206 4.206 4 C -0.130 4.130 5 C -0.100 4.100 6 C -0.052 4.052 7 C 0.000 4.000 8 C -0.240 4.240 9 C 0.088 3.912 10 C -0.517 4.517 11 H 0.103 0.897 12 C -0.178 4.178 13 N -0.438 5.438 14 Si 0.806 3.194 15 H -0.185 1.185 16 H -0.187 1.187 17 H -0.182 1.182 18 C -0.314 4.314 19 C -0.053 4.053 20 N -0.290 5.290 21 C -0.116 4.116 22 C -0.155 4.155 23 H 0.149 0.851 24 H 0.109 0.891 25 H 0.108 0.892 26 H 0.165 0.835 27 H 0.151 0.849 28 H 0.142 0.858 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.176 0.824 32 H 0.138 0.862 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.095 -13.138 1.591 13.399 hybrid contribution -1.862 2.712 -0.060 3.290 sum -3.957 -10.426 1.530 11.256 Atomic orbital electron populations 1.23799 0.91987 1.08614 1.06431 1.85254 1.09589 1.01359 1.92733 1.21955 0.96485 0.97573 1.04537 1.20890 0.95044 0.95443 1.01600 1.21245 0.99532 0.91854 0.97355 1.18901 0.94033 0.91015 1.01247 1.19729 0.89604 0.92664 0.97956 1.22291 0.99366 0.93237 1.09067 1.18215 0.92944 0.93206 0.86877 1.19917 0.95541 0.98910 1.37382 0.89741 1.26854 1.02493 0.97025 0.91410 1.69806 1.25857 1.25765 1.22390 0.85137 0.75930 0.78319 0.80002 1.18485 1.18709 1.18164 1.22155 0.93803 0.99637 1.15804 1.22389 0.99484 0.87933 0.95511 1.67395 1.18736 1.19734 1.23139 1.21241 0.95463 0.96277 0.98653 1.21216 0.99364 0.91749 1.03176 0.85111 0.89070 0.89190 0.83500 0.84902 0.85762 0.89553 0.86640 0.82363 0.86158 0.83421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.14 113.37 1.04 -1.09 16 2 S -0.13 -2.96 22.56 -56.49 -1.27 -4.23 16 3 C -0.09 -2.75 6.12 22.69 0.14 -2.61 16 4 C -0.11 -3.34 9.78 22.37 0.22 -3.12 16 5 C -0.08 -2.98 9.56 22.46 0.21 -2.77 16 6 C -0.05 -2.10 5.88 -20.02 -0.12 -2.22 16 7 C 0.13 6.54 6.73 41.84 0.28 6.82 16 8 C -0.22 -11.56 8.14 23.08 0.19 -11.37 16 9 C 0.10 5.16 5.60 -21.12 -0.12 5.04 16 10 C -0.49 -25.53 9.12 23.52 0.21 -25.32 16 11 H 0.08 4.22 7.90 -2.91 -0.02 4.20 16 12 C 0.04 1.91 5.20 85.29 0.44 2.35 16 13 N -0.81 -40.61 10.93 21.84 0.24 -40.37 16 14 Si 0.99 36.12 29.59 68.60 2.03 38.15 16 15 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 16 H -0.26 -9.07 7.11 99.48 0.71 -8.36 16 17 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 18 C -0.29 -14.35 9.90 22.86 0.23 -14.12 16 19 C 0.10 4.69 11.15 84.55 0.94 5.63 16 20 N -0.57 -28.02 9.39 -185.40 -1.74 -29.76 16 21 C -0.10 -3.70 9.40 22.46 0.21 -3.49 16 22 C -0.13 -4.09 9.35 22.38 0.21 -3.88 16 23 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.09 1.31 7.74 -2.39 -0.02 1.30 16 25 H 0.09 1.33 7.74 -2.39 -0.02 1.31 16 26 H 0.15 3.81 8.06 -2.91 -0.02 3.78 16 27 H 0.13 4.98 7.52 -2.91 -0.02 4.95 16 28 H 0.12 6.63 4.32 -2.91 -0.01 6.62 16 29 H 0.29 13.07 8.29 -92.71 -0.77 12.31 16 30 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 31 H 0.16 5.94 8.06 -2.91 -0.02 5.91 16 32 H 0.12 4.89 6.16 -2.91 -0.02 4.87 16 33 H 0.15 3.63 5.86 -2.91 -0.02 3.62 16 Total: -1.00 -60.96 296.72 4.48 -56.48 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 1.13 Total: 29.88 kcal Atomic # 6 Polarization: -54.24 SS G_CDS: 4.09 Total: -50.15 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.50 Total: -70.13 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 2.03 Total: 38.15 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -1.27 Total: -4.23 kcal Total: -60.96 4.48 -56.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239496413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.451 kcal (2) G-P(sol) polarization free energy of solvation -60.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds