Wall clock time and date at job start Mon Mar 30 2020 00:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.76204 * 102.99661 * 2 1 4 4 C 1.39311 * 119.93427 * 179.97438 * 3 2 1 5 5 C 1.37614 * 120.06107 * 180.02562 * 4 3 2 6 6 C 1.39831 * 119.93916 * 359.97438 * 5 4 3 7 7 C 1.47743 * 120.06277 * 179.97438 * 6 5 4 8 8 C 1.40410 * 120.35347 * 180.22504 * 7 6 5 9 9 C 1.36564 * 118.60062 * 180.27225 * 8 7 6 10 10 C 1.40941 * 119.27402 * 359.74334 * 9 8 7 11 11 C 1.40880 * 119.67589 * 179.97438 * 10 9 8 12 12 H 1.07996 * 119.99820 * 353.67311 * 11 10 9 13 13 C 1.40033 * 120.00013 * 173.67366 * 11 10 9 14 14 N 1.30760 * 120.00056 * 6.30682 * 13 11 10 15 15 Si 1.86799 * 120.00100 * 186.30911 * 13 11 10 16 16 H 1.48503 * 109.47117 * 94.98296 * 15 13 11 17 17 H 1.48499 * 109.47155 * 214.98474 * 15 13 11 18 18 H 1.48502 * 109.46967 * 334.98503 * 15 13 11 19 19 N 1.33821 * 120.64980 * 0.02562 * 10 9 8 20 20 C 1.31164 * 121.51347 * 359.97438 * 19 10 9 21 21 C 1.39832 * 119.87194 * 0.26712 * 6 5 4 22 22 C 1.37614 * 119.93766 * 359.45102 * 21 6 5 23 23 H 1.09001 * 109.46796 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47374 * 300.00513 * 1 2 3 25 25 H 1.09008 * 109.47132 * 60.00335 * 1 2 3 26 26 H 1.07998 * 119.97487 * 359.97438 * 4 3 2 27 27 H 1.08002 * 120.02933 * 179.97438 * 5 4 3 28 28 H 1.08002 * 120.69768 * 359.97438 * 8 7 6 29 29 H 1.08007 * 120.36343 * 179.77689 * 9 8 7 30 30 H 0.96995 * 120.00065 * 179.97438 * 14 13 11 31 31 H 1.08000 * 119.66687 * 179.97438 * 20 19 10 32 32 H 1.08006 * 120.03015 * 179.71037 * 21 6 5 33 33 H 1.07998 * 119.96725 * 180.27855 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5430 2.1228 0.0005 5 6 3.8554 3.4630 0.0011 6 6 2.8338 4.4177 0.0005 7 6 3.1661 5.8573 0.0017 8 6 2.1452 6.8212 0.0059 9 6 2.4929 8.1418 0.0011 10 6 3.8573 8.4952 -0.0023 11 6 4.2255 9.8550 -0.0078 12 1 3.4693 10.6188 -0.1124 13 6 5.5722 10.2162 0.1224 14 7 6.4992 9.2940 0.1250 15 14 6.0444 12.0155 0.2924 16 1 6.1804 12.3578 1.7310 17 1 7.3371 12.2554 -0.3979 18 1 4.9909 12.8638 -0.3208 19 7 4.8064 7.5518 -0.0015 20 6 4.5043 6.2754 0.0031 21 6 1.4971 4.0074 0.0051 22 6 1.1904 2.6658 -0.0013 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8901 26 1 4.3317 1.3850 0.0014 27 1 4.8888 3.7770 0.0019 28 1 1.1067 6.5244 0.0079 29 1 1.7307 8.9071 0.0006 30 1 7.4320 9.5442 0.2148 31 1 5.2944 5.5391 0.0032 32 1 0.7059 4.7427 0.0094 33 1 0.1582 2.3484 -0.0023 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239497404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:30 Heat of formation + Delta-G solvation = 48.900864 kcal Electronic energy + Delta-G solvation = -16877.703673 eV Core-core repulsion = 14186.893139 eV Total energy + Delta-G solvation = -2690.810534 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.01945 -37.71450 -34.00340 -31.96571 -31.22534 -30.40858 -29.12824 -28.58983 -25.69914 -22.97763 -22.61676 -20.93446 -20.38374 -17.83030 -17.39408 -16.00094 -15.76034 -14.90333 -14.63995 -14.39592 -13.85424 -13.75898 -13.70755 -13.35720 -12.81920 -12.79246 -12.51682 -12.15506 -12.10355 -11.74267 -11.36536 -11.14441 -10.90353 -10.70248 -10.53431 -10.14911 -9.99305 -9.90768 -9.28360 -8.63253 -8.41496 -7.86067 -7.73813 -6.87415 -6.65072 -4.67986 1.38170 1.67758 1.80789 2.55358 2.67015 2.96194 2.97403 2.99856 3.08128 3.76311 4.19863 4.65276 4.96283 4.97364 5.13533 5.22936 5.51909 5.58262 5.74726 5.75394 5.83901 5.96990 6.01309 6.25170 6.36924 6.56861 6.61601 6.68676 6.77625 6.88620 6.98995 7.21062 7.31050 7.51236 7.67412 7.83920 8.00157 8.39796 8.69288 9.89551 10.05411 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.059260 B = 0.003397 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.384238 B = 8241.800914 C = 8694.800898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.146 6.146 3 C -0.131 4.131 4 C -0.081 4.081 5 C -0.134 4.134 6 C 0.038 3.962 7 C -0.282 4.282 8 C -0.035 4.035 9 C -0.271 4.271 10 C 0.251 3.749 11 C -0.403 4.403 12 H 0.089 0.911 13 C 0.062 3.938 14 N -0.697 5.697 15 Si 0.913 3.087 16 H -0.267 1.267 17 H -0.273 1.273 18 H -0.259 1.259 19 N -0.489 5.489 20 C 0.160 3.840 21 C -0.136 4.136 22 C -0.115 4.115 23 H 0.101 0.899 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.278 0.722 31 H 0.124 0.876 32 H 0.120 0.880 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 -9.625 0.087 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.094 5.906 3 C -0.242 4.242 4 C -0.104 4.104 5 C -0.153 4.153 6 C 0.036 3.964 7 C -0.287 4.287 8 C -0.058 4.058 9 C -0.293 4.293 10 C 0.128 3.872 11 C -0.433 4.433 12 H 0.107 0.893 13 C -0.166 4.166 14 N -0.316 5.316 15 Si 0.737 3.263 16 H -0.192 1.192 17 H -0.198 1.198 18 H -0.183 1.183 19 N -0.201 5.201 20 C -0.010 4.010 21 C -0.156 4.156 22 C -0.138 4.138 23 H 0.120 0.880 24 H 0.100 0.900 25 H 0.100 0.900 26 H 0.137 0.863 27 H 0.144 0.856 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.089 0.911 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -4.684 -10.332 0.090 11.345 hybrid contribution -1.593 1.552 0.102 2.226 sum -6.278 -8.781 0.193 10.796 Atomic orbital electron populations 1.23565 0.95307 1.06381 1.05435 1.85160 1.05988 1.05419 1.94055 1.21422 0.96621 0.94851 1.11352 1.20540 0.93748 0.95871 1.00259 1.21116 0.99360 0.91664 1.03196 1.18949 0.92116 0.92919 0.92461 1.19039 0.95106 0.90430 1.24150 1.20660 0.96821 0.92987 0.95295 1.21428 0.97229 0.95250 1.15416 1.18683 0.87190 0.93367 0.87943 1.19802 0.93137 0.91745 1.38591 0.89284 1.26217 0.96576 0.99970 0.93844 1.70138 1.01448 1.34450 1.25579 0.86207 0.79068 0.81587 0.79485 1.19177 1.19796 1.18257 1.68811 1.34640 0.98797 1.17829 1.22813 0.92550 0.94029 0.91587 1.21031 0.96300 0.94608 1.03628 1.20907 0.97287 0.93185 1.02435 0.87990 0.90044 0.90047 0.86347 0.85599 0.88323 0.88074 0.91050 0.85872 0.86233 0.86879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.14 101.05 0.92 -0.36 16 2 S -0.15 -1.88 22.56 -107.50 -2.43 -4.31 16 3 C -0.13 -2.02 6.13 -38.79 -0.24 -2.26 16 4 C -0.08 -1.30 9.78 -39.41 -0.39 -1.69 16 5 C -0.13 -2.34 9.43 -39.21 -0.37 -2.71 16 6 C 0.04 0.74 5.89 -104.82 -0.62 0.12 16 7 C -0.28 -6.18 5.92 -104.46 -0.62 -6.80 16 8 C -0.03 -0.75 9.46 -39.37 -0.37 -1.12 16 9 C -0.27 -6.37 9.76 -39.16 -0.38 -6.75 16 10 C 0.25 6.57 6.54 -84.98 -0.56 6.02 16 11 C -0.40 -10.21 9.11 -37.91 -0.35 -10.55 16 12 H 0.09 2.08 7.85 -52.49 -0.41 1.67 16 13 C 0.06 1.48 5.49 -17.34 -0.10 1.39 16 14 N -0.70 -17.60 11.47 55.55 0.64 -16.96 16 15 Si 0.91 17.43 29.56 -169.99 -5.03 12.41 16 16 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 17 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 18 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 19 N -0.49 -13.02 7.86 -10.83 -0.09 -13.11 16 20 C 0.16 3.78 10.60 -17.10 -0.18 3.59 16 21 C -0.14 -2.33 9.43 -39.21 -0.37 -2.70 16 22 C -0.12 -1.76 9.35 -39.41 -0.37 -2.13 16 23 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 24 H 0.08 0.73 7.74 -51.93 -0.40 0.32 16 25 H 0.08 0.72 7.74 -51.92 -0.40 0.32 16 26 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 27 H 0.13 2.08 6.21 -52.49 -0.33 1.75 16 28 H 0.10 1.84 6.29 -52.49 -0.33 1.51 16 29 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 30 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 31 H 0.12 2.60 6.20 -52.49 -0.33 2.27 16 32 H 0.12 1.90 6.24 -52.48 -0.33 1.58 16 33 H 0.11 1.44 5.86 -52.49 -0.31 1.13 16 LS Contribution 295.47 15.07 4.45 4.45 Total: -1.00 -27.80 295.47 -9.65 -37.45 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -3.23 Total: 6.03 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: -3.97 Total: -25.96 kcal Atomic # 7 Polarization: -30.62 SS G_CDS: 0.55 Total: -30.07 kcal Atomic # 14 Polarization: 17.43 SS G_CDS: -5.03 Total: 12.41 kcal Atomic # 16 Polarization: -1.88 SS G_CDS: -2.43 Total: -4.31 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -27.80 -9.65 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239497404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.353 kcal (2) G-P(sol) polarization free energy of solvation -27.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds