Wall clock time and date at job start Mon Mar 30 2020 00:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76200 * 103.00183 * 2 1 4 4 C 1.39318 * 119.93124 * 179.97438 * 3 2 1 5 5 C 1.37599 * 120.06680 * 180.27307 * 4 3 2 6 6 C 1.39885 * 119.92615 * 359.45447 * 5 4 3 7 7 C 1.47623 * 120.06460 * 180.25394 * 6 5 4 8 8 C 1.39468 * 120.80247 * 129.99129 * 7 6 5 9 9 N 1.31600 * 120.64458 * 179.75249 * 8 7 6 10 10 C 1.32282 * 122.51851 * 0.54186 * 9 8 7 11 11 C 1.36396 * 121.54638 * 359.72215 * 10 9 8 12 12 C 1.41161 * 119.12081 * 0.02562 * 11 10 9 13 13 C 1.40809 * 121.11781 * 179.97438 * 12 11 10 14 14 H 1.07998 * 120.00038 * 154.56166 * 13 12 11 15 15 C 1.40115 * 119.99796 * 334.56107 * 13 12 11 16 16 N 1.30724 * 120.00190 * 344.32204 * 15 13 12 17 17 Si 1.86800 * 119.99761 * 164.32618 * 15 13 12 18 18 H 1.48500 * 109.47429 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47536 * 119.99858 * 17 15 13 20 20 H 1.48500 * 109.46940 * 239.99648 * 17 15 13 21 21 C 1.39883 * 119.86974 * 0.52388 * 6 5 4 22 22 C 1.37590 * 119.93045 * 359.75051 * 21 6 5 23 23 H 1.09011 * 109.46649 * 60.00258 * 1 2 3 24 24 H 1.08996 * 109.47068 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47172 * 300.00819 * 1 2 3 26 26 H 1.07997 * 119.97024 * 0.02562 * 4 3 2 27 27 H 1.07995 * 120.03476 * 179.72303 * 5 4 3 28 28 H 1.08001 * 119.67400 * 0.02562 * 8 7 6 29 29 H 1.08000 * 119.22875 * 179.74313 * 10 9 8 30 30 H 1.07997 * 120.44089 * 180.02562 * 11 10 9 31 31 H 0.96993 * 119.99955 * 180.02562 * 16 15 13 32 32 H 1.08006 * 120.03442 * 179.77866 * 21 6 5 33 33 H 1.08000 * 119.96358 * 179.97438 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 3.5432 2.1225 0.0005 5 6 3.8560 3.4625 0.0062 6 6 2.8340 4.4177 -0.0001 7 6 3.1661 5.8560 0.0003 8 6 2.5815 6.7243 -0.9214 9 7 2.8761 8.0068 -0.9151 10 6 3.7346 8.5351 -0.0585 11 6 4.3659 7.7734 0.8805 12 6 4.0955 6.3891 0.9373 13 6 4.7237 5.5634 1.8892 14 1 4.2482 4.6474 2.2073 15 6 5.9659 5.9301 2.4237 16 7 6.6833 6.8523 1.8374 17 14 6.5970 5.1011 3.9741 18 1 5.6038 4.0999 4.4395 19 1 7.8855 4.4225 3.6834 20 1 6.8032 6.1221 5.0325 21 6 1.4968 4.0072 -0.0011 22 6 1.1904 2.6658 -0.0010 23 1 -0.3633 0.5139 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5140 0.8899 26 1 4.3318 1.3846 0.0005 27 1 4.8893 3.7764 0.0112 28 1 1.8768 6.3409 -1.6445 29 1 3.9403 9.5943 -0.1035 30 1 5.0633 8.2234 1.5714 31 1 7.5433 7.1059 2.2072 32 1 0.7056 4.7424 -0.0023 33 1 0.1581 2.3483 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239498360.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:56 Heat of formation + Delta-G solvation = 39.104123 kcal Electronic energy + Delta-G solvation = -17474.044596 eV Core-core repulsion = 14782.809243 eV Total energy + Delta-G solvation = -2691.235353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.99477 -37.67798 -34.30716 -32.21114 -30.78524 -30.29477 -28.94283 -28.14063 -26.10260 -22.94284 -22.19375 -21.25000 -20.25119 -17.76716 -17.24441 -15.88767 -15.60007 -14.82210 -14.53932 -14.42162 -14.10333 -13.82743 -13.77192 -13.08758 -12.86497 -12.63614 -12.48156 -12.28153 -12.12265 -11.53755 -11.45854 -11.25988 -11.03056 -10.69705 -10.38079 -10.07154 -9.84089 -9.60365 -9.24471 -8.46420 -8.09045 -8.04774 -7.74594 -7.07890 -6.82858 -4.70827 1.59346 1.73114 1.95358 2.60816 2.64387 2.76386 2.95925 3.02029 3.15432 3.75439 4.31032 4.51599 5.01947 5.03390 5.26216 5.36337 5.54483 5.59205 5.67875 5.83188 5.98366 6.04695 6.20184 6.38651 6.54581 6.72625 6.76609 6.79861 6.93339 6.98683 7.24503 7.29511 7.42700 7.50552 7.76187 7.98003 8.32523 8.57517 8.61687 9.52927 9.89228 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.016819 B = 0.006330 C = 0.004817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1664.392051 B = 4422.667515 C = 5811.239619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 S -0.145 6.145 3 C -0.110 4.110 4 C -0.100 4.100 5 C -0.084 4.084 6 C 0.028 3.972 7 C -0.240 4.240 8 C 0.132 3.868 9 N -0.578 5.578 10 C 0.081 3.919 11 C -0.207 4.207 12 C 0.146 3.854 13 C -0.439 4.439 14 H 0.088 0.912 15 C 0.078 3.922 16 N -0.777 5.777 17 Si 0.908 3.092 18 H -0.256 1.256 19 H -0.271 1.271 20 H -0.269 1.269 21 C -0.115 4.115 22 C -0.131 4.131 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.119 0.881 27 H 0.134 0.866 28 H 0.121 0.879 29 H 0.118 0.882 30 H 0.126 0.874 31 H 0.286 0.714 32 H 0.119 0.881 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.643 -8.679 -0.138 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.307 4.307 2 S 0.095 5.905 3 C -0.222 4.222 4 C -0.123 4.123 5 C -0.104 4.104 6 C 0.025 3.975 7 C -0.246 4.246 8 C -0.027 4.027 9 N -0.293 5.293 10 C -0.066 4.066 11 C -0.229 4.229 12 C 0.138 3.862 13 C -0.469 4.469 14 H 0.106 0.894 15 C -0.143 4.143 16 N -0.401 5.401 17 Si 0.732 3.268 18 H -0.180 1.180 19 H -0.196 1.196 20 H -0.194 1.194 21 C -0.135 4.135 22 C -0.154 4.154 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.136 0.864 27 H 0.152 0.848 28 H 0.139 0.861 29 H 0.136 0.864 30 H 0.144 0.856 31 H 0.097 0.903 32 H 0.137 0.863 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.150 -8.988 -0.724 10.384 hybrid contribution 0.023 0.285 1.366 1.396 sum -5.127 -8.703 0.642 10.121 Atomic orbital electron populations 1.23571 0.95338 1.06346 1.05482 1.85198 1.05939 1.05472 1.93856 1.21527 0.96723 0.94820 1.09102 1.20617 0.93640 0.96158 1.01908 1.21377 1.00324 0.91056 0.97593 1.18782 0.91734 0.92894 0.94050 1.19536 1.10193 0.91517 1.03349 1.22111 0.96111 0.88997 0.95490 1.67317 1.20118 1.13677 1.28159 1.21721 0.93698 0.98471 0.92693 1.21900 1.04366 0.94291 1.02347 1.17745 0.87655 0.91849 0.88925 1.19638 1.01958 1.06818 1.18519 0.89394 1.26033 0.96531 0.94194 0.97582 1.69760 1.10505 1.24305 1.35508 0.86229 0.79428 0.80194 0.80971 1.17961 1.19576 1.19411 1.21167 0.96213 0.94561 1.01526 1.20884 0.97241 0.93201 1.04112 0.90017 0.88025 0.89995 0.86351 0.84805 0.86106 0.86403 0.85646 0.90325 0.86317 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.14 101.05 0.92 -0.45 16 2 S -0.14 -1.99 22.56 -107.50 -2.43 -4.41 16 3 C -0.11 -1.82 6.13 -38.78 -0.24 -2.05 16 4 C -0.10 -1.77 9.78 -39.41 -0.39 -2.16 16 5 C -0.08 -1.66 8.05 -39.20 -0.32 -1.98 16 6 C 0.03 0.58 5.01 -104.84 -0.53 0.06 16 7 C -0.24 -5.58 5.54 -104.04 -0.58 -6.15 16 8 C 0.13 2.99 10.72 -17.19 -0.18 2.80 16 9 N -0.58 -13.79 10.32 -13.35 -0.14 -13.93 16 10 C 0.08 1.91 11.08 -18.02 -0.20 1.71 16 11 C -0.21 -5.12 8.72 -39.14 -0.34 -5.46 16 12 C 0.15 3.65 5.59 -106.24 -0.59 3.06 16 13 C -0.44 -10.71 7.27 -37.91 -0.28 -10.98 16 14 H 0.09 2.13 6.69 -52.49 -0.35 1.78 16 15 C 0.08 1.80 5.21 -17.32 -0.09 1.71 16 16 N -0.78 -18.50 10.95 55.56 0.61 -17.89 16 17 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 18 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 C -0.11 -2.07 9.54 -39.20 -0.37 -2.45 16 22 C -0.13 -2.12 9.35 -39.42 -0.37 -2.48 16 23 H 0.08 0.76 7.74 -51.92 -0.40 0.36 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.08 0.79 7.74 -51.92 -0.40 0.38 16 26 H 0.12 1.89 8.06 -52.49 -0.42 1.46 16 27 H 0.13 2.80 7.34 -52.49 -0.39 2.41 16 28 H 0.12 2.42 8.05 -52.49 -0.42 2.00 16 29 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 30 H 0.13 3.14 6.27 -52.49 -0.33 2.81 16 31 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 32 H 0.12 1.99 8.05 -52.48 -0.42 1.57 16 33 H 0.11 1.51 5.86 -52.49 -0.31 1.21 16 LS Contribution 296.15 15.07 4.46 4.46 Total: -1.00 -26.48 296.15 -9.49 -35.96 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -3.42 Total: 8.13 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: -3.54 Total: -24.83 kcal Atomic # 7 Polarization: -32.28 SS G_CDS: 0.47 Total: -31.81 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -2.43 Total: -4.41 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.48 -9.49 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239498360.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.068 kcal (2) G-P(sol) polarization free energy of solvation -26.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds