Wall clock time and date at job start Mon Mar 30 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76205 * 103.00240 * 2 1 4 4 C 1.39111 * 119.95800 * 180.02562 * 3 2 1 5 5 C 1.37793 * 120.04145 * 180.02562 * 4 3 2 6 6 C 1.39467 * 119.95341 * 359.97438 * 5 4 3 7 7 C 1.48279 * 120.03796 * 179.97438 * 6 5 4 8 8 C 1.40089 * 120.82932 * 359.97438 * 7 6 5 9 9 C 1.38458 * 119.42469 * 180.02562 * 8 7 6 10 10 N 1.31509 * 121.15004 * 0.02562 * 9 8 7 11 11 C 1.33657 * 121.80547 * 359.97438 * 10 9 8 12 12 C 1.41435 * 119.77496 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99664 * 187.07565 * 12 11 10 14 14 C 1.40021 * 120.00323 * 7.07684 * 12 11 10 15 15 N 1.30742 * 120.00374 * 182.55862 * 14 12 11 16 16 Si 1.86807 * 119.99975 * 2.55526 * 14 12 11 17 17 H 1.48499 * 109.47048 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.46970 * 300.00496 * 16 14 12 19 19 H 1.48498 * 109.46749 * 59.99977 * 16 14 12 20 20 C 1.39383 * 120.82789 * 180.25770 * 7 6 5 21 21 C 1.39461 * 119.92273 * 0.24964 * 6 5 4 22 22 C 1.37790 * 119.95276 * 359.47345 * 21 6 5 23 23 H 1.09000 * 109.47405 * 300.00232 * 1 2 3 24 24 H 1.09005 * 109.47081 * 59.99983 * 1 2 3 25 25 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.98572 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.02740 * 180.02562 * 5 4 3 28 28 H 1.08007 * 120.28750 * 359.97438 * 8 7 6 29 29 H 1.07997 * 119.42496 * 180.02562 * 9 8 7 30 30 H 0.96999 * 119.99756 * 354.84662 * 15 14 12 31 31 H 1.08008 * 120.58349 * 359.97438 * 20 7 6 32 32 H 1.08001 * 120.02243 * 179.72400 * 21 6 5 33 33 H 1.08002 * 119.97928 * 180.25002 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5410 2.1226 -0.0005 5 6 3.8530 3.4647 0.0000 6 6 2.8337 4.4166 0.0005 7 6 3.1672 5.8614 0.0017 8 6 4.5009 6.2903 0.0028 9 6 4.7792 7.6466 0.0044 10 7 3.8134 8.5392 0.0054 11 6 2.5252 8.1832 0.0044 12 6 1.5212 9.1794 0.0061 13 1 0.4840 8.9006 0.1206 14 6 1.8718 10.5270 -0.1406 15 7 0.9492 11.4519 -0.0889 16 14 3.6578 11.0035 -0.4101 17 1 3.7631 12.4796 -0.5337 18 1 4.4721 10.5444 0.7438 19 1 4.1581 10.3651 -1.6540 20 6 2.1617 6.8266 0.0076 21 6 1.5003 4.0080 0.0058 22 6 1.1923 2.6649 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.3301 1.3852 -0.0005 27 1 4.8861 3.7794 -0.0008 28 1 5.3050 5.5692 0.0032 29 1 5.8073 7.9772 0.0048 30 1 0.0143 11.2014 -0.0241 31 1 1.1214 6.5364 0.0111 32 1 0.7096 4.7437 0.0107 33 1 0.1598 2.3480 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001239499421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:50 Heat of formation + Delta-G solvation = 34.522383 kcal Electronic energy + Delta-G solvation = -17023.206661 eV Core-core repulsion = 14331.772628 eV Total energy + Delta-G solvation = -2691.434032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.43000 -38.13859 -33.99755 -32.83297 -31.36766 -30.42086 -29.40800 -28.73088 -25.66772 -23.66278 -22.72549 -21.17580 -20.45730 -18.37094 -17.82387 -16.25218 -15.56867 -15.31884 -14.89603 -14.41811 -14.05585 -13.95943 -13.92696 -13.51844 -13.17608 -13.10519 -12.62679 -12.41671 -12.39284 -12.17732 -11.52488 -11.27977 -10.82056 -10.55610 -10.29816 -10.14944 -10.02236 -9.65229 -9.34488 -8.94417 -8.49494 -8.06217 -7.75139 -7.29555 -7.23957 -4.86403 0.96504 1.40100 1.46214 2.26319 2.47827 2.59876 3.59771 3.62594 3.94689 4.01473 4.42202 4.62163 4.79902 4.81216 4.83918 4.93112 5.09168 5.35501 5.44303 5.46448 5.52095 5.64080 5.75439 5.97499 6.17137 6.24536 6.29666 6.37716 6.44449 6.68557 6.88074 6.95166 7.15592 7.32484 7.39587 7.58295 7.99364 8.20222 8.55446 9.39728 9.94561 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.039430 B = 0.003960 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.940854 B = 7069.500556 C = 7753.689154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.132 6.132 3 C -0.095 4.095 4 C -0.100 4.100 5 C -0.093 4.093 6 C -0.025 4.025 7 C 0.012 3.988 8 C -0.304 4.304 9 C 0.153 3.847 10 N -0.574 5.574 11 C 0.249 3.751 12 C -0.472 4.472 13 H 0.081 0.919 14 C 0.043 3.957 15 N -0.802 5.802 16 Si 1.156 2.844 17 H -0.332 1.332 18 H -0.279 1.279 19 H -0.293 1.293 20 C -0.240 4.240 21 C -0.092 4.092 22 C -0.132 4.132 23 H 0.084 0.916 24 H 0.084 0.916 25 H 0.105 0.895 26 H 0.126 0.874 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.130 0.870 30 H 0.283 0.717 31 H 0.108 0.892 32 H 0.130 0.870 33 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.727 -17.583 -0.054 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.109 5.891 3 C -0.207 4.207 4 C -0.123 4.123 5 C -0.112 4.112 6 C -0.027 4.027 7 C 0.006 3.994 8 C -0.327 4.327 9 C -0.008 4.008 10 N -0.293 5.293 11 C 0.127 3.873 12 C -0.503 4.503 13 H 0.099 0.901 14 C -0.178 4.178 15 N -0.423 5.423 16 Si 0.990 3.010 17 H -0.266 1.266 18 H -0.206 1.206 19 H -0.221 1.221 20 C -0.263 4.263 21 C -0.112 4.112 22 C -0.155 4.155 23 H 0.103 0.897 24 H 0.103 0.897 25 H 0.124 0.876 26 H 0.143 0.857 27 H 0.150 0.850 28 H 0.126 0.874 29 H 0.148 0.852 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.148 0.852 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.349 -16.479 -0.190 16.646 hybrid contribution -2.404 -1.257 0.208 2.721 sum -0.055 -17.735 0.018 17.735 Atomic orbital electron populations 1.23639 0.94847 1.06820 1.05764 1.85306 1.06437 1.04151 1.93174 1.21652 0.96738 0.95738 1.06565 1.20628 0.94009 0.95954 1.01687 1.21225 0.99629 0.91599 0.98777 1.19072 0.92790 0.92964 0.97907 1.18681 0.93961 0.89994 0.96723 1.21183 0.94883 0.96216 1.20386 1.22047 0.97301 0.89376 0.92059 1.66530 1.00895 1.36286 1.25576 1.18585 0.89418 0.91307 0.88023 1.20805 0.94513 0.92819 1.42182 0.90063 1.27862 1.09212 0.92077 0.88692 1.70658 1.03558 1.37140 1.30986 0.81802 0.70306 0.69958 0.78893 1.26616 1.20631 1.22110 1.21755 0.97638 0.93237 1.13649 1.21233 0.96449 0.95078 0.98450 1.21034 0.97901 0.93020 1.03530 0.89749 0.89748 0.87613 0.85656 0.84963 0.87445 0.85240 0.90586 0.87415 0.85177 0.86053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.14 101.05 0.92 -0.19 16 2 S -0.13 -1.46 22.56 -107.50 -2.43 -3.88 16 3 C -0.09 -1.27 6.12 -38.93 -0.24 -1.51 16 4 C -0.10 -1.35 9.78 -39.42 -0.39 -1.74 16 5 C -0.09 -1.39 9.44 -39.29 -0.37 -1.76 16 6 C -0.03 -0.44 5.88 -104.85 -0.62 -1.05 16 7 C 0.01 0.25 5.91 -104.65 -0.62 -0.37 16 8 C -0.30 -6.03 9.51 -38.81 -0.37 -6.40 16 9 C 0.15 3.28 11.17 -17.61 -0.20 3.09 16 10 N -0.57 -14.38 4.54 -11.21 -0.05 -14.43 16 11 C 0.25 6.41 6.39 -85.03 -0.54 5.87 16 12 C -0.47 -12.71 9.58 -37.70 -0.36 -13.07 16 13 H 0.08 2.17 8.05 -52.48 -0.42 1.75 16 14 C 0.04 1.16 5.52 -17.35 -0.10 1.07 16 15 N -0.80 -21.72 13.65 55.55 0.76 -20.96 16 16 Si 1.16 28.26 25.56 -169.99 -4.34 23.91 16 17 H -0.33 -8.04 7.11 56.52 0.40 -7.64 16 18 H -0.28 -6.77 6.67 56.52 0.38 -6.39 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 20 C -0.24 -5.50 9.22 -38.33 -0.35 -5.85 16 21 C -0.09 -1.46 9.44 -39.29 -0.37 -1.83 16 22 C -0.13 -1.80 9.35 -39.42 -0.37 -2.16 16 23 H 0.08 0.63 7.74 -51.92 -0.40 0.23 16 24 H 0.08 0.63 7.74 -51.92 -0.40 0.23 16 25 H 0.11 0.63 8.14 -51.92 -0.42 0.20 16 26 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.13 1.79 6.27 -52.49 -0.33 1.46 16 28 H 0.11 1.79 6.31 -52.48 -0.33 1.46 16 29 H 0.13 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.28 7.30 8.72 -40.82 -0.36 6.94 16 31 H 0.11 2.29 6.32 -52.48 -0.33 1.96 16 32 H 0.13 2.01 6.28 -52.49 -0.33 1.68 16 33 H 0.12 1.35 5.86 -52.49 -0.31 1.05 16 LS Contribution 291.19 15.07 4.39 4.39 Total: -1.00 -28.87 291.19 -8.94 -37.80 By element: Atomic # 1 Polarization: 2.40 SS G_CDS: -3.30 Total: -0.90 kcal Atomic # 6 Polarization: -21.97 SS G_CDS: -3.96 Total: -25.93 kcal Atomic # 7 Polarization: -36.10 SS G_CDS: 0.71 Total: -35.40 kcal Atomic # 14 Polarization: 28.26 SS G_CDS: -4.34 Total: 23.91 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.43 Total: -3.88 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.87 -8.94 -37.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239499421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.327 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds