Wall clock time and date at job start Mon Mar 30 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.76205 * 103.00240 * 2 1 4 4 C 1.39111 * 119.95800 * 180.02562 * 3 2 1 5 5 C 1.37793 * 120.04145 * 180.02562 * 4 3 2 6 6 C 1.39467 * 119.95341 * 359.97438 * 5 4 3 7 7 C 1.48279 * 120.03796 * 179.97438 * 6 5 4 8 8 C 1.40089 * 120.82932 * 359.97438 * 7 6 5 9 9 C 1.38458 * 119.42469 * 180.02562 * 8 7 6 10 10 N 1.31509 * 121.15004 * 0.02562 * 9 8 7 11 11 C 1.33657 * 121.80547 * 359.97438 * 10 9 8 12 12 C 1.41435 * 119.77496 * 179.97438 * 11 10 9 13 13 H 1.08007 * 119.99664 * 187.07565 * 12 11 10 14 14 C 1.40021 * 120.00323 * 7.07684 * 12 11 10 15 15 N 1.30742 * 120.00374 * 182.55862 * 14 12 11 16 16 Si 1.86807 * 119.99975 * 2.55526 * 14 12 11 17 17 H 1.48499 * 109.47048 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.46970 * 300.00496 * 16 14 12 19 19 H 1.48498 * 109.46749 * 59.99977 * 16 14 12 20 20 C 1.39383 * 120.82789 * 180.25770 * 7 6 5 21 21 C 1.39461 * 119.92273 * 0.24964 * 6 5 4 22 22 C 1.37790 * 119.95276 * 359.47345 * 21 6 5 23 23 H 1.09000 * 109.47405 * 300.00232 * 1 2 3 24 24 H 1.09005 * 109.47081 * 59.99983 * 1 2 3 25 25 H 1.09001 * 109.47362 * 179.97438 * 1 2 3 26 26 H 1.07994 * 119.98572 * 359.97438 * 4 3 2 27 27 H 1.07998 * 120.02740 * 180.02562 * 5 4 3 28 28 H 1.08007 * 120.28750 * 359.97438 * 8 7 6 29 29 H 1.07997 * 119.42496 * 180.02562 * 9 8 7 30 30 H 0.96999 * 119.99756 * 354.84662 * 15 14 12 31 31 H 1.08008 * 120.58349 * 359.97438 * 20 7 6 32 32 H 1.08001 * 120.02243 * 179.72400 * 21 6 5 33 33 H 1.08002 * 119.97928 * 180.25002 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2104 1.7169 0.0000 4 6 3.5410 2.1226 -0.0005 5 6 3.8530 3.4647 0.0000 6 6 2.8337 4.4166 0.0005 7 6 3.1672 5.8614 0.0017 8 6 4.5009 6.2903 0.0028 9 6 4.7792 7.6466 0.0044 10 7 3.8134 8.5392 0.0054 11 6 2.5252 8.1832 0.0044 12 6 1.5212 9.1794 0.0061 13 1 0.4840 8.9006 0.1206 14 6 1.8718 10.5270 -0.1406 15 7 0.9492 11.4519 -0.0889 16 14 3.6578 11.0035 -0.4101 17 1 3.7631 12.4796 -0.5337 18 1 4.4721 10.5444 0.7438 19 1 4.1581 10.3651 -1.6540 20 6 2.1617 6.8266 0.0076 21 6 1.5003 4.0080 0.0058 22 6 1.1923 2.6649 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 4.3301 1.3852 -0.0005 27 1 4.8861 3.7794 -0.0008 28 1 5.3050 5.5692 0.0032 29 1 5.8073 7.9772 0.0048 30 1 0.0143 11.2014 -0.0241 31 1 1.1214 6.5364 0.0111 32 1 0.7096 4.7437 0.0107 33 1 0.1598 2.3480 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001239499421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:49 Heat of formation + Delta-G solvation = 20.127528 kcal Electronic energy + Delta-G solvation = -17023.830868 eV Core-core repulsion = 14331.772628 eV Total energy + Delta-G solvation = -2692.058240 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.89667 -39.60748 -35.86374 -34.36846 -32.65602 -32.01234 -30.62963 -29.62282 -27.49935 -25.09684 -24.07428 -22.63288 -22.08972 -20.20030 -18.93080 -17.66203 -17.12890 -16.75675 -16.17712 -15.82772 -15.40971 -15.27349 -14.90200 -14.74419 -14.64463 -14.43866 -14.26249 -13.91073 -13.85947 -13.38309 -12.84314 -12.66374 -12.53324 -12.09129 -11.76330 -11.60552 -11.46056 -11.29795 -11.23758 -10.05629 -9.90588 -9.87163 -9.66039 -9.25227 -8.27969 -6.84519 -0.33123 0.35062 0.54623 0.67435 1.04268 1.43067 1.62052 1.73268 2.07654 2.48462 2.56302 2.83883 3.59456 3.68515 3.74808 3.88871 3.97650 4.23451 4.25528 4.29817 4.34705 4.47999 4.57277 4.72484 4.74677 4.84397 4.96087 5.05800 5.18645 5.24851 5.35210 5.36422 5.42131 5.67873 5.82571 5.92089 6.01093 6.34928 6.63685 7.56606 7.95057 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.039430 B = 0.003960 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.940854 B = 7069.500556 C = 7753.689154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 S -0.132 6.132 3 C -0.092 4.092 4 C -0.104 4.104 5 C -0.086 4.086 6 C -0.062 4.062 7 C 0.020 3.980 8 C -0.280 4.280 9 C 0.134 3.866 10 N -0.597 5.597 11 C 0.237 3.763 12 C -0.514 4.514 13 H 0.063 0.937 14 C 0.015 3.985 15 N -0.832 5.832 16 Si 1.190 2.810 17 H -0.332 1.332 18 H -0.276 1.276 19 H -0.295 1.295 20 C -0.265 4.265 21 C -0.100 4.100 22 C -0.135 4.135 23 H 0.090 0.910 24 H 0.090 0.910 25 H 0.129 0.871 26 H 0.150 0.850 27 H 0.150 0.850 28 H 0.150 0.850 29 H 0.168 0.832 30 H 0.279 0.721 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.473 -21.376 -0.083 21.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.110 5.890 3 C -0.204 4.204 4 C -0.127 4.127 5 C -0.105 4.105 6 C -0.065 4.065 7 C 0.014 3.986 8 C -0.302 4.302 9 C -0.025 4.025 10 N -0.316 5.316 11 C 0.113 3.887 12 C -0.547 4.547 13 H 0.081 0.919 14 C -0.201 4.201 15 N -0.456 5.456 16 Si 1.023 2.977 17 H -0.266 1.266 18 H -0.204 1.204 19 H -0.223 1.223 20 C -0.287 4.287 21 C -0.120 4.120 22 C -0.158 4.158 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.147 0.853 26 H 0.168 0.832 27 H 0.167 0.833 28 H 0.168 0.832 29 H 0.185 0.815 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.140 0.860 33 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 4.102 -20.305 -0.215 20.717 hybrid contribution -2.871 -0.600 0.226 2.942 sum 1.231 -20.906 0.011 20.942 Atomic orbital electron populations 1.23803 0.92086 1.08614 1.06416 1.85381 1.09505 1.01673 1.92439 1.22027 0.96830 0.97417 1.04173 1.20938 0.94856 0.95883 1.01021 1.21390 0.99754 0.91781 0.97608 1.18996 0.94185 0.91474 1.01809 1.19066 0.93758 0.91612 0.94172 1.21745 0.95745 0.96527 1.16222 1.22773 0.98271 0.89920 0.91530 1.66453 1.01107 1.37944 1.26127 1.18698 0.89727 0.92179 0.88057 1.20752 0.94251 0.93684 1.45975 0.91908 1.28572 1.10942 0.92261 0.88309 1.70677 1.03525 1.37235 1.34147 0.81336 0.68202 0.69583 0.78571 1.26582 1.20401 1.22303 1.21834 0.98782 0.92854 1.15237 1.21302 0.95966 0.96165 0.98564 1.21257 0.99397 0.92074 1.03062 0.89103 0.89104 0.85285 0.83227 0.83272 0.83230 0.81494 0.90998 0.87195 0.85967 0.83722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.14 113.37 1.04 -0.63 16 2 S -0.13 -2.43 22.56 -56.49 -1.27 -3.71 16 3 C -0.09 -2.16 6.12 22.69 0.14 -2.02 16 4 C -0.10 -2.43 9.78 22.37 0.22 -2.21 16 5 C -0.09 -2.28 9.44 22.46 0.21 -2.07 16 6 C -0.06 -2.04 5.88 -20.01 -0.12 -2.16 16 7 C 0.02 0.80 5.91 -19.88 -0.12 0.68 16 8 C -0.28 -10.25 9.51 22.77 0.22 -10.03 16 9 C 0.13 5.42 11.17 84.79 0.95 6.37 16 10 N -0.60 -29.72 4.54 -189.39 -0.86 -30.58 16 11 C 0.24 12.53 6.39 40.19 0.26 12.79 16 12 C -0.51 -29.29 9.58 23.49 0.23 -29.07 16 13 H 0.06 3.64 8.05 -2.91 -0.02 3.62 16 14 C 0.02 0.85 5.52 85.29 0.47 1.32 16 15 N -0.83 -47.43 13.65 21.84 0.30 -47.13 16 16 Si 1.19 58.66 25.56 68.60 1.75 60.42 16 17 H -0.33 -16.03 7.11 99.48 0.71 -15.33 16 18 H -0.28 -13.30 6.67 99.48 0.66 -12.64 16 19 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 20 C -0.27 -12.35 9.22 23.08 0.21 -12.14 16 21 C -0.10 -3.05 9.44 22.46 0.21 -2.84 16 22 C -0.13 -3.33 9.35 22.38 0.21 -3.12 16 23 H 0.09 1.01 7.74 -2.39 -0.02 0.99 16 24 H 0.09 1.01 7.74 -2.39 -0.02 1.00 16 25 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 27 H 0.15 3.33 6.27 -2.91 -0.02 3.31 16 28 H 0.15 4.19 6.31 -2.91 -0.02 4.17 16 29 H 0.17 5.39 8.06 -2.91 -0.02 5.37 16 30 H 0.28 15.41 8.72 -92.71 -0.81 14.60 16 31 H 0.11 4.90 6.32 -2.91 -0.02 4.88 16 32 H 0.12 3.82 6.28 -2.91 -0.02 3.80 16 33 H 0.15 2.80 5.86 -2.91 -0.02 2.78 16 Total: -1.00 -64.63 291.19 5.09 -59.54 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: 1.05 Total: 6.58 kcal Atomic # 6 Polarization: -49.24 SS G_CDS: 4.12 Total: -45.12 kcal Atomic # 7 Polarization: -77.15 SS G_CDS: -0.56 Total: -77.71 kcal Atomic # 14 Polarization: 58.66 SS G_CDS: 1.75 Total: 60.42 kcal Atomic # 16 Polarization: -2.43 SS G_CDS: -1.27 Total: -3.71 kcal Total: -64.63 5.09 -59.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001239499421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.667 kcal (2) G-P(sol) polarization free energy of solvation -64.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds