Wall clock time and date at job start Mon Mar 30 2020 00:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 102.99870 * 2 1 4 4 C 1.39127 * 120.01183 * 0.02562 * 3 2 1 5 5 C 1.38204 * 120.21794 * 180.02562 * 4 3 2 6 6 C 1.38020 * 120.22923 * 359.97438 * 5 4 3 7 7 C 1.39646 * 120.01268 * 359.97438 * 6 5 4 8 8 C 1.47979 * 120.10659 * 179.97438 * 7 6 5 9 9 C 1.39892 * 119.45034 * 4.98028 * 8 7 6 10 10 C 1.36608 * 119.46809 * 179.78662 * 9 8 7 11 11 C 1.41305 * 118.41196 * 0.47504 * 10 9 8 12 12 C 1.41050 * 120.55501 * 179.78009 * 11 10 9 13 13 H 1.07999 * 119.99786 * 24.57619 * 12 11 10 14 14 C 1.40020 * 119.99949 * 204.57759 * 12 11 10 15 15 N 1.30794 * 120.00257 * 17.21153 * 14 12 11 16 16 Si 1.86798 * 119.99792 * 197.21612 * 14 12 11 17 17 H 1.48507 * 109.46947 * 265.17149 * 16 14 12 18 18 H 1.48498 * 109.47409 * 25.17291 * 16 14 12 19 19 H 1.48502 * 109.47419 * 145.17777 * 16 14 12 20 20 C 1.40953 * 118.88844 * 359.50078 * 11 10 9 21 21 N 1.31263 * 120.40344 * 0.27708 * 20 11 10 22 22 C 1.38672 * 120.00707 * 180.23032 * 3 2 1 23 23 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47005 * 299.99817 * 1 2 3 25 25 H 1.08996 * 109.47186 * 60.00168 * 1 2 3 26 26 H 1.08013 * 119.89255 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.88853 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99572 * 179.97438 * 6 5 4 29 29 H 1.08000 * 120.26257 * 0.02562 * 9 8 7 30 30 H 1.07996 * 120.79243 * 180.23504 * 10 9 8 31 31 H 0.96994 * 119.99935 * 180.02562 * 15 14 12 32 32 H 1.08002 * 119.79788 * 180.24719 * 20 11 10 33 33 H 1.08002 * 120.11609 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1930 2.6658 0.0005 5 6 1.4990 4.0136 0.0000 6 6 2.8158 4.4272 -0.0005 7 6 3.8445 3.4828 0.0000 8 6 5.2570 3.9239 -0.0011 9 6 5.5519 5.2875 0.1030 10 6 6.8559 5.6947 0.1064 11 6 7.8668 4.7140 -0.0067 12 6 9.2278 5.0844 -0.0127 13 1 9.5374 6.0102 0.4493 14 6 10.1773 4.2520 -0.6177 15 7 9.7940 3.3239 -1.4559 16 14 11.9914 4.4669 -0.2278 17 1 12.6182 5.3392 -1.2533 18 1 12.1393 5.0920 1.1111 19 1 12.6591 3.1405 -0.2313 20 6 7.4926 3.3588 -0.1075 21 7 6.2252 3.0173 -0.1015 22 6 3.5364 2.1224 -0.0048 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.1606 2.3483 0.0005 27 1 0.7050 4.7458 0.0000 28 1 3.0506 5.4813 -0.0014 29 1 4.7551 6.0120 0.1840 30 1 7.1079 6.7415 0.1896 31 1 10.4518 2.7470 -1.8746 32 1 8.2534 2.5967 -0.1905 33 1 4.3279 1.3876 -0.0090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241311778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:14 Heat of formation + Delta-G solvation = 40.113918 kcal Electronic energy + Delta-G solvation = -16939.001193 eV Core-core repulsion = 14247.809628 eV Total energy + Delta-G solvation = -2691.191565 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.04129 -37.75493 -34.30001 -31.76955 -31.31993 -30.37230 -29.45685 -28.43615 -25.54181 -22.91129 -22.56516 -21.17316 -20.40685 -17.67151 -17.36339 -15.98994 -15.66250 -15.06032 -14.82368 -14.28109 -13.90455 -13.82463 -13.72806 -13.33965 -12.92789 -12.76730 -12.56914 -12.14237 -11.83073 -11.63118 -11.38766 -11.17067 -11.07150 -10.90393 -10.62221 -10.21560 -9.99637 -9.64911 -9.39484 -8.75416 -8.47279 -7.98774 -7.35626 -7.15225 -7.09936 -4.60800 1.43046 1.69433 1.75734 2.58493 2.63841 2.87250 2.93016 2.97706 3.08171 3.70727 4.12452 4.57826 5.00091 5.00562 5.18233 5.23537 5.47173 5.57791 5.60373 5.68807 5.92423 6.04206 6.20513 6.29514 6.43315 6.61972 6.65614 6.77187 6.85027 6.88394 7.14596 7.15944 7.31719 7.57568 7.68085 7.90609 8.13057 8.48112 8.55395 9.60582 9.83490 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.003907 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.030023 B = 7164.514235 C = 7897.975931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 S -0.131 6.131 3 C -0.081 4.081 4 C -0.165 4.165 5 C -0.099 4.099 6 C -0.140 4.140 7 C 0.040 3.960 8 C -0.019 4.019 9 C -0.106 4.106 10 C -0.206 4.206 11 C 0.069 3.931 12 C -0.431 4.431 13 H 0.086 0.914 14 C 0.071 3.929 15 N -0.772 5.772 16 Si 0.917 3.083 17 H -0.267 1.267 18 H -0.257 1.257 19 H -0.271 1.271 20 C 0.045 3.955 21 N -0.454 5.454 22 C -0.090 4.090 23 H 0.102 0.898 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.114 0.886 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.290 0.710 32 H 0.152 0.848 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.607 -1.766 1.757 10.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.311 4.311 2 S 0.110 5.890 3 C -0.193 4.193 4 C -0.189 4.189 5 C -0.119 4.119 6 C -0.160 4.160 7 C 0.037 3.963 8 C -0.150 4.150 9 C -0.126 4.126 10 C -0.230 4.230 11 C 0.064 3.936 12 C -0.460 4.460 13 H 0.104 0.896 14 C -0.150 4.150 15 N -0.395 5.395 16 Si 0.740 3.260 17 H -0.192 1.192 18 H -0.181 1.181 19 H -0.196 1.196 20 C -0.123 4.123 21 N -0.161 5.161 22 C -0.114 4.114 23 H 0.121 0.879 24 H 0.099 0.901 25 H 0.100 0.900 26 H 0.131 0.869 27 H 0.136 0.864 28 H 0.140 0.860 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.101 0.899 32 H 0.169 0.831 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.170 -3.867 1.523 10.987 hybrid contribution 0.220 2.181 0.042 2.193 sum -9.950 -1.686 1.565 10.213 Atomic orbital electron populations 1.23597 0.95705 1.06439 1.05349 1.85471 1.05350 1.04800 1.93363 1.21523 0.96750 0.95344 1.05724 1.20926 0.97303 0.93263 1.07365 1.20774 0.96144 0.94870 1.00091 1.21214 0.92022 0.99391 1.03414 1.18614 0.91805 0.91919 0.93945 1.18767 0.90612 0.89626 1.15955 1.21180 0.96432 0.95372 0.99592 1.20992 0.92365 0.98236 1.11418 1.18653 0.93689 0.92738 0.88509 1.19690 0.91193 1.05577 1.29538 0.89583 1.26119 1.02708 0.93586 0.92596 1.69753 1.37934 1.14354 1.17456 0.86133 0.80339 0.79105 0.80378 1.19212 1.18073 1.19557 1.22956 0.90691 0.95122 1.03578 1.67106 1.01451 1.38138 1.09409 1.20886 0.93628 0.96162 1.00736 0.87910 0.90060 0.90045 0.86853 0.86436 0.85971 0.87965 0.87738 0.89874 0.83063 0.84725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.15 101.05 0.92 -0.47 16 2 S -0.13 -1.90 22.56 -107.50 -2.43 -4.32 16 3 C -0.08 -1.39 6.11 -39.09 -0.24 -1.63 16 4 C -0.16 -2.48 9.36 -39.26 -0.37 -2.85 16 5 C -0.10 -1.48 10.02 -39.67 -0.40 -1.88 16 6 C -0.14 -2.43 9.41 -39.14 -0.37 -2.80 16 7 C 0.04 0.83 5.87 -104.92 -0.62 0.21 16 8 C -0.02 -0.45 6.73 -82.74 -0.56 -1.01 16 9 C -0.11 -2.36 9.37 -39.55 -0.37 -2.73 16 10 C -0.21 -4.84 9.88 -39.01 -0.39 -5.23 16 11 C 0.07 1.77 5.58 -106.64 -0.60 1.18 16 12 C -0.43 -10.59 9.06 -37.85 -0.34 -10.94 16 13 H 0.09 1.99 7.90 -52.49 -0.41 1.58 16 14 C 0.07 1.65 5.16 -17.33 -0.09 1.56 16 15 N -0.77 -18.63 10.96 55.55 0.61 -18.02 16 16 Si 0.92 17.08 29.59 -169.99 -5.03 12.05 16 17 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 C 0.05 1.18 9.88 -16.77 -0.17 1.01 16 21 N -0.45 -11.62 9.39 -9.10 -0.09 -11.70 16 22 C -0.09 -1.81 9.31 -38.96 -0.36 -2.17 16 23 H 0.10 0.80 8.14 -51.92 -0.42 0.38 16 24 H 0.08 0.73 7.74 -51.92 -0.40 0.33 16 25 H 0.08 0.74 7.74 -51.93 -0.40 0.34 16 26 H 0.11 1.38 5.86 -52.48 -0.31 1.07 16 27 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 28 H 0.12 1.93 6.17 -52.49 -0.32 1.60 16 29 H 0.10 1.93 6.17 -52.49 -0.32 1.61 16 30 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 31 H 0.29 6.28 8.29 -40.82 -0.34 5.95 16 32 H 0.15 4.01 6.17 -52.49 -0.32 3.68 16 33 H 0.13 2.88 7.53 -52.49 -0.40 2.48 16 LS Contribution 296.58 15.07 4.47 4.47 Total: -1.00 -27.20 296.58 -9.69 -36.89 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.30 Total: 8.36 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: -3.93 Total: -27.73 kcal Atomic # 7 Polarization: -30.24 SS G_CDS: 0.52 Total: -29.72 kcal Atomic # 14 Polarization: 17.08 SS G_CDS: -5.03 Total: 12.05 kcal Atomic # 16 Polarization: -1.90 SS G_CDS: -2.43 Total: -4.32 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.20 -9.69 -36.89 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241311778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.008 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds