Wall clock time and date at job start Mon Mar 30 2020 00:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.76197 * 102.99870 * 2 1 4 4 C 1.39127 * 120.01183 * 0.02562 * 3 2 1 5 5 C 1.38204 * 120.21794 * 180.02562 * 4 3 2 6 6 C 1.38020 * 120.22923 * 359.97438 * 5 4 3 7 7 C 1.39646 * 120.01268 * 359.97438 * 6 5 4 8 8 C 1.47979 * 120.10659 * 179.97438 * 7 6 5 9 9 C 1.39892 * 119.45034 * 4.98028 * 8 7 6 10 10 C 1.36608 * 119.46809 * 179.78662 * 9 8 7 11 11 C 1.41305 * 118.41196 * 0.47504 * 10 9 8 12 12 C 1.41050 * 120.55501 * 179.78009 * 11 10 9 13 13 H 1.07999 * 119.99786 * 24.57619 * 12 11 10 14 14 C 1.40020 * 119.99949 * 204.57759 * 12 11 10 15 15 N 1.30794 * 120.00257 * 17.21153 * 14 12 11 16 16 Si 1.86798 * 119.99792 * 197.21612 * 14 12 11 17 17 H 1.48507 * 109.46947 * 265.17149 * 16 14 12 18 18 H 1.48498 * 109.47409 * 25.17291 * 16 14 12 19 19 H 1.48502 * 109.47419 * 145.17777 * 16 14 12 20 20 C 1.40953 * 118.88844 * 359.50078 * 11 10 9 21 21 N 1.31263 * 120.40344 * 0.27708 * 20 11 10 22 22 C 1.38672 * 120.00707 * 180.23032 * 3 2 1 23 23 H 1.09007 * 109.47145 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47005 * 299.99817 * 1 2 3 25 25 H 1.08996 * 109.47186 * 60.00168 * 1 2 3 26 26 H 1.08013 * 119.89255 * 359.97438 * 4 3 2 27 27 H 1.08003 * 119.88853 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99572 * 179.97438 * 6 5 4 29 29 H 1.08000 * 120.26257 * 0.02562 * 9 8 7 30 30 H 1.07996 * 120.79243 * 180.23504 * 10 9 8 31 31 H 0.96994 * 119.99935 * 180.02562 * 15 14 12 32 32 H 1.08002 * 119.79788 * 180.24719 * 20 11 10 33 33 H 1.08002 * 120.11609 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.1930 2.6658 0.0005 5 6 1.4990 4.0136 0.0000 6 6 2.8158 4.4272 -0.0005 7 6 3.8445 3.4828 0.0000 8 6 5.2570 3.9239 -0.0011 9 6 5.5519 5.2875 0.1030 10 6 6.8559 5.6947 0.1064 11 6 7.8668 4.7140 -0.0067 12 6 9.2278 5.0844 -0.0127 13 1 9.5374 6.0102 0.4493 14 6 10.1773 4.2520 -0.6177 15 7 9.7940 3.3239 -1.4559 16 14 11.9914 4.4669 -0.2278 17 1 12.6182 5.3392 -1.2533 18 1 12.1393 5.0920 1.1111 19 1 12.6591 3.1405 -0.2313 20 6 7.4926 3.3588 -0.1075 21 7 6.2252 3.0173 -0.1015 22 6 3.5364 2.1224 -0.0048 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 0.1606 2.3483 0.0005 27 1 0.7050 4.7458 0.0000 28 1 3.0506 5.4813 -0.0014 29 1 4.7551 6.0120 0.1840 30 1 7.1079 6.7415 0.1896 31 1 10.4518 2.7470 -1.8746 32 1 8.2534 2.5967 -0.1905 33 1 4.3279 1.3876 -0.0090 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241311778.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:13 Heat of formation + Delta-G solvation = 26.762937 kcal Electronic energy + Delta-G solvation = -16939.580135 eV Core-core repulsion = 14247.809628 eV Total energy + Delta-G solvation = -2691.770507 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.66888 -39.31354 -36.05378 -33.35052 -33.05046 -31.77027 -30.82498 -29.58650 -27.25990 -24.48118 -24.16061 -22.79647 -21.98895 -19.47832 -18.74093 -17.41171 -17.22572 -16.58401 -16.41674 -15.70198 -15.41689 -15.09600 -14.80561 -14.72425 -14.45387 -14.23170 -13.78197 -13.59633 -13.35165 -13.23131 -13.04165 -12.77468 -12.58929 -12.27125 -12.06674 -11.85611 -11.31533 -11.11514 -10.75476 -10.38603 -10.18833 -9.84942 -9.06826 -8.83845 -8.35916 -6.46826 -0.02287 0.39325 0.61248 0.98164 1.05317 1.38463 1.52112 1.56169 1.56863 2.14471 2.56487 2.95709 3.72379 3.76220 3.97067 4.13134 4.29800 4.30921 4.31773 4.40479 4.53253 4.64943 4.76177 4.86098 4.89865 4.98006 5.07308 5.11915 5.28594 5.34047 5.46083 5.59293 5.74234 5.91860 6.03454 6.07583 6.29920 6.65841 6.70465 7.72758 8.13718 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.033889 B = 0.003907 C = 0.003544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.030023 B = 7164.514235 C = 7897.975931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.173 6.173 3 C -0.087 4.087 4 C -0.149 4.149 5 C -0.088 4.088 6 C -0.138 4.138 7 C 0.003 3.997 8 C -0.026 4.026 9 C -0.108 4.108 10 C -0.212 4.212 11 C 0.041 3.959 12 C -0.463 4.463 13 H 0.094 0.906 14 C 0.032 3.968 15 N -0.809 5.809 16 Si 0.994 3.006 17 H -0.258 1.258 18 H -0.253 1.253 19 H -0.266 1.266 20 C 0.013 3.987 21 N -0.477 5.477 22 C -0.115 4.115 23 H 0.126 0.874 24 H 0.096 0.904 25 H 0.095 0.905 26 H 0.153 0.847 27 H 0.164 0.836 28 H 0.140 0.860 29 H 0.142 0.858 30 H 0.125 0.875 31 H 0.297 0.703 32 H 0.135 0.865 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.628 -0.639 2.066 13.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.068 5.932 3 C -0.199 4.199 4 C -0.173 4.173 5 C -0.108 4.108 6 C -0.159 4.159 7 C 0.000 4.000 8 C -0.158 4.158 9 C -0.128 4.128 10 C -0.237 4.237 11 C 0.036 3.964 12 C -0.491 4.491 13 H 0.112 0.888 14 C -0.186 4.186 15 N -0.433 5.433 16 Si 0.813 3.187 17 H -0.183 1.183 18 H -0.177 1.177 19 H -0.190 1.190 20 C -0.153 4.153 21 N -0.185 5.185 22 C -0.139 4.139 23 H 0.144 0.856 24 H 0.115 0.885 25 H 0.114 0.886 26 H 0.171 0.829 27 H 0.182 0.818 28 H 0.158 0.842 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.108 0.892 32 H 0.152 0.848 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.181 -2.753 1.829 13.589 hybrid contribution 0.774 1.728 -0.059 1.894 sum -12.407 -1.025 1.770 12.575 Atomic orbital electron populations 1.23751 0.90627 1.08528 1.06718 1.85677 1.10872 1.03575 1.93102 1.21692 0.96001 0.97184 1.05034 1.21462 0.98539 0.92970 1.04346 1.21286 0.96060 0.95830 0.97601 1.21464 0.92350 0.99559 1.02495 1.18692 0.91055 0.93053 0.97154 1.19459 0.91837 0.90258 1.14272 1.21535 0.97051 0.95619 0.98577 1.21329 0.92663 0.98902 1.10832 1.18948 0.95051 0.92873 0.89544 1.19969 0.91509 1.06732 1.30916 0.88827 1.27045 1.07189 0.92700 0.91627 1.69816 1.39762 1.15318 1.18430 0.85004 0.74211 0.79223 0.80237 1.18253 1.17665 1.18993 1.22776 0.90821 0.95446 1.06264 1.67086 1.01750 1.39496 1.10176 1.20747 0.94624 0.95625 1.02920 0.85555 0.88531 0.88619 0.82927 0.81822 0.84241 0.84073 0.85686 0.89177 0.84824 0.87958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 9.15 113.37 1.04 -0.93 16 2 S -0.17 -4.83 22.56 -56.49 -1.27 -6.10 16 3 C -0.09 -2.86 6.11 22.59 0.14 -2.72 16 4 C -0.15 -3.87 9.36 22.48 0.21 -3.66 16 5 C -0.09 -2.23 10.02 22.21 0.22 -2.01 16 6 C -0.14 -4.43 9.41 22.56 0.21 -4.22 16 7 C 0.00 0.13 5.87 -20.05 -0.12 0.01 16 8 C -0.03 -1.26 6.73 41.95 0.28 -0.97 16 9 C -0.11 -4.83 9.37 22.29 0.21 -4.62 16 10 C -0.21 -10.20 9.88 22.64 0.22 -9.97 16 11 C 0.04 2.19 5.58 -21.17 -0.12 2.07 16 12 C -0.46 -23.70 9.06 23.39 0.21 -23.48 16 13 H 0.09 4.45 7.90 -2.91 -0.02 4.43 16 14 C 0.03 1.54 5.16 85.28 0.44 1.98 16 15 N -0.81 -41.20 10.96 21.84 0.24 -40.96 16 16 Si 0.99 35.67 29.59 68.60 2.03 37.70 16 17 H -0.26 -8.83 7.11 99.48 0.71 -8.12 16 18 H -0.25 -8.83 7.11 99.48 0.71 -8.13 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 20 C 0.01 0.73 9.88 85.44 0.84 1.58 16 21 N -0.48 -26.14 9.39 -182.70 -1.72 -27.86 16 22 C -0.11 -4.75 9.31 22.67 0.21 -4.54 16 23 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.10 1.25 7.74 -2.39 -0.02 1.23 16 25 H 0.09 1.25 7.74 -2.39 -0.02 1.24 16 26 H 0.15 2.75 5.86 -2.90 -0.02 2.74 16 27 H 0.16 2.69 8.06 -2.91 -0.02 2.67 16 28 H 0.14 3.91 6.17 -2.91 -0.02 3.89 16 29 H 0.14 5.03 6.17 -2.91 -0.02 5.01 16 30 H 0.13 5.31 8.06 -2.91 -0.02 5.29 16 31 H 0.30 13.53 8.29 -92.71 -0.77 12.76 16 32 H 0.13 7.77 6.17 -2.91 -0.02 7.75 16 33 H 0.10 4.77 7.53 -2.91 -0.02 4.74 16 Total: -1.00 -64.71 296.58 4.42 -60.29 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 1.13 Total: 28.41 kcal Atomic # 6 Polarization: -55.49 SS G_CDS: 4.01 Total: -51.49 kcal Atomic # 7 Polarization: -67.34 SS G_CDS: -1.48 Total: -68.82 kcal Atomic # 14 Polarization: 35.67 SS G_CDS: 2.03 Total: 37.70 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.27 Total: -6.10 kcal Total: -64.71 4.42 -60.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241311778.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.058 kcal (2) G-P(sol) polarization free energy of solvation -64.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.295 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds