Wall clock time and date at job start Mon Mar 30 2020 00:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76199 * 102.99798 * 2 1 4 4 C 1.39146 * 120.00700 * 0.02562 * 3 2 1 5 5 C 1.38224 * 120.22741 * 179.97438 * 4 3 2 6 6 C 1.38006 * 120.23294 * 359.78113 * 5 4 3 7 7 C 1.39699 * 120.00801 * 0.47532 * 6 5 4 8 8 C 1.47832 * 120.11277 * 179.78730 * 7 6 5 9 9 N 1.32575 * 119.99360 * 136.42431 * 8 7 6 10 10 C 1.31740 * 121.72350 * 180.02562 * 9 8 7 11 11 C 1.38874 * 121.50555 * 359.97438 * 10 9 8 12 12 C 1.36884 * 119.79678 * 0.02562 * 11 10 9 13 13 C 1.41130 * 118.39368 * 359.72031 * 12 11 10 14 14 C 1.40889 * 120.72055 * 180.29465 * 13 12 11 15 15 H 1.07998 * 120.00045 * 151.87178 * 14 13 12 16 16 C 1.40071 * 119.99750 * 331.86982 * 14 13 12 17 17 N 1.30774 * 119.99980 * 348.00307 * 16 14 13 18 18 Si 1.86792 * 119.99933 * 167.99996 * 16 14 13 19 19 H 1.48507 * 109.47156 * 60.00099 * 18 16 14 20 20 H 1.48502 * 109.47269 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47458 * 299.99954 * 18 16 14 22 22 C 1.38648 * 120.00417 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47435 * 300.00090 * 1 2 3 25 25 H 1.09001 * 109.47018 * 60.00230 * 1 2 3 26 26 H 1.08006 * 119.88642 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.87978 * 180.02562 * 5 4 3 28 28 H 1.08003 * 119.99216 * 180.25516 * 6 5 4 29 29 H 1.08001 * 119.25047 * 179.97438 * 10 9 8 30 30 H 1.07999 * 120.09974 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.80565 * 180.02562 * 12 11 10 32 32 H 0.96998 * 120.00410 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.11667 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1928 2.6659 0.0005 5 6 1.4985 4.0139 0.0011 6 6 2.8150 4.4279 0.0056 7 6 3.8444 3.4835 -0.0003 8 6 5.2554 3.9244 -0.0002 9 7 6.1372 3.3243 0.7872 10 6 7.4026 3.6897 0.8149 11 6 7.8770 4.7237 0.0185 12 6 7.0197 5.3862 -0.8181 13 6 5.6667 4.9859 -0.8467 14 6 4.7434 5.6297 -1.6940 15 1 3.8831 5.0914 -2.0635 16 6 4.9412 6.9680 -2.0571 17 7 5.8382 7.6885 -1.4354 18 14 3.9239 7.7236 -3.4294 19 1 2.4840 7.6579 -3.0720 20 1 4.3224 9.1417 -3.6179 21 1 4.1559 6.9721 -4.6891 22 6 3.5362 2.1224 0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.1605 2.3482 0.0005 27 1 0.7043 4.7457 0.0019 28 1 3.0494 5.4822 0.0102 29 1 8.0867 3.1733 1.4720 30 1 8.9191 5.0043 0.0591 31 1 7.3713 6.1925 -1.4448 32 1 5.9750 8.6154 -1.6865 33 1 4.3277 1.3875 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241311892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:16 Heat of formation + Delta-G solvation = 41.998769 kcal Electronic energy + Delta-G solvation = -17537.048482 eV Core-core repulsion = 14845.938650 eV Total energy + Delta-G solvation = -2691.109832 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.99969 -37.61848 -34.23299 -32.00646 -30.80604 -30.23266 -29.41958 -28.14698 -25.74770 -22.83940 -22.28308 -21.28022 -20.30242 -17.52910 -17.13779 -15.84576 -15.59601 -15.07154 -14.74173 -14.08225 -14.05925 -13.84896 -13.72429 -13.21433 -12.74313 -12.56630 -12.43365 -12.03227 -11.85053 -11.57716 -11.43976 -11.12936 -10.90621 -10.88293 -10.61563 -9.92540 -9.88548 -9.49329 -9.20397 -8.63771 -8.18980 -8.10816 -7.44361 -7.04346 -6.93684 -4.59354 1.69012 1.78409 1.93437 2.59287 2.67073 2.91471 2.95109 2.98260 3.12416 3.76143 4.35400 4.51162 5.06746 5.07852 5.30204 5.39943 5.53813 5.59465 5.66975 6.06183 6.11126 6.17568 6.24695 6.37583 6.58870 6.68364 6.71661 6.83614 6.97318 7.00525 7.18432 7.38203 7.50120 7.65656 7.78668 7.84357 8.30947 8.53198 8.60123 9.51154 9.93762 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.006410 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.106772 B = 4367.384165 C = 5641.163133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.139 6.139 3 C -0.091 4.091 4 C -0.152 4.152 5 C -0.113 4.113 6 C -0.094 4.094 7 C 0.042 3.958 8 C 0.009 3.991 9 N -0.452 5.452 10 C -0.030 4.030 11 C -0.149 4.149 12 C -0.127 4.127 13 C 0.087 3.913 14 C -0.440 4.440 15 H 0.089 0.911 16 C 0.074 3.926 17 N -0.788 5.788 18 Si 0.911 3.089 19 H -0.261 1.261 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.087 4.087 23 H 0.101 0.899 24 H 0.080 0.920 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.118 0.882 28 H 0.137 0.863 29 H 0.122 0.878 30 H 0.100 0.900 31 H 0.128 0.872 32 H 0.286 0.714 33 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 -4.901 -0.173 9.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.101 5.899 3 C -0.203 4.203 4 C -0.176 4.176 5 C -0.133 4.133 6 C -0.115 4.115 7 C 0.039 3.961 8 C -0.129 4.129 9 N -0.159 5.159 10 C -0.191 4.191 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.083 3.917 14 C -0.469 4.469 15 H 0.107 0.893 16 C -0.145 4.145 17 N -0.412 5.412 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.186 1.186 22 C -0.110 4.110 23 H 0.120 0.880 24 H 0.099 0.901 25 H 0.099 0.901 26 H 0.130 0.870 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.139 0.861 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.097 0.903 33 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -7.114 -6.376 0.368 9.560 hybrid contribution -0.795 2.345 -1.115 2.716 sum -7.909 -4.030 -0.747 8.908 Atomic orbital electron populations 1.23573 0.95611 1.06307 1.05383 1.85327 1.05528 1.05263 1.93749 1.21389 0.96655 0.95024 1.07235 1.20957 0.97163 0.93343 1.06100 1.20866 0.96512 0.94711 1.01173 1.21542 0.91295 1.00823 0.97824 1.18357 0.91779 0.91304 0.94616 1.19471 0.91135 1.01736 1.00581 1.67025 1.02655 1.27038 1.19177 1.21685 0.92132 1.00634 1.04657 1.21460 0.99067 0.97679 0.98749 1.21440 0.92688 1.00833 1.00304 1.18325 0.92761 0.90340 0.90320 1.19597 1.08164 0.95483 1.23656 0.89325 1.26003 0.95110 0.97403 0.96033 1.69732 1.28003 1.09018 1.34479 0.86284 0.80755 0.78128 0.81328 1.18528 1.20116 1.18574 1.20852 0.93453 0.95802 1.00930 0.88034 0.90070 0.90051 0.86964 0.86424 0.84482 0.86056 0.88218 0.85411 0.90310 0.85922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.15 101.05 0.92 -0.54 16 2 S -0.14 -2.08 22.56 -107.50 -2.43 -4.51 16 3 C -0.09 -1.64 6.11 -39.09 -0.24 -1.88 16 4 C -0.15 -2.50 9.36 -39.25 -0.37 -2.87 16 5 C -0.11 -1.95 10.02 -39.67 -0.40 -2.35 16 6 C -0.09 -1.93 7.84 -39.12 -0.31 -2.24 16 7 C 0.04 0.95 5.25 -104.94 -0.55 0.40 16 8 C 0.01 0.21 6.43 -82.24 -0.53 -0.32 16 9 N -0.45 -11.15 10.14 -9.17 -0.09 -11.24 16 10 C -0.03 -0.68 11.16 -17.36 -0.19 -0.87 16 11 C -0.15 -3.37 10.03 -39.84 -0.40 -3.77 16 12 C -0.13 -3.13 8.72 -38.98 -0.34 -3.47 16 13 C 0.09 2.22 5.54 -106.41 -0.59 1.63 16 14 C -0.44 -10.75 6.73 -37.89 -0.25 -11.01 16 15 H 0.09 2.13 6.48 -52.49 -0.34 1.79 16 16 C 0.07 1.70 5.25 -17.31 -0.09 1.61 16 17 N -0.79 -18.78 10.90 55.55 0.61 -18.18 16 18 Si 0.91 17.45 29.58 -169.99 -5.03 12.42 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 22 C -0.09 -1.79 9.40 -38.94 -0.37 -2.16 16 23 H 0.10 0.84 8.14 -51.92 -0.42 0.42 16 24 H 0.08 0.80 7.74 -51.93 -0.40 0.39 16 25 H 0.08 0.80 7.74 -51.92 -0.40 0.40 16 26 H 0.11 1.51 5.86 -52.48 -0.31 1.20 16 27 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 28 H 0.14 2.94 6.75 -52.48 -0.35 2.59 16 29 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 30 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 31 H 0.13 3.18 6.32 -52.49 -0.33 2.85 16 32 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 33 H 0.12 2.60 8.06 -52.49 -0.42 2.17 16 LS Contribution 295.07 15.07 4.45 4.45 Total: -1.00 -26.77 295.07 -9.58 -36.35 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -3.39 Total: 8.54 kcal Atomic # 6 Polarization: -24.14 SS G_CDS: -3.70 Total: -27.84 kcal Atomic # 7 Polarization: -29.93 SS G_CDS: 0.51 Total: -29.42 kcal Atomic # 14 Polarization: 17.45 SS G_CDS: -5.03 Total: 12.42 kcal Atomic # 16 Polarization: -2.08 SS G_CDS: -2.43 Total: -4.51 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -26.77 -9.58 -36.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241311892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.353 kcal (2) G-P(sol) polarization free energy of solvation -26.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds