Wall clock time and date at job start Mon Mar 30 2020 00:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 C 1.76199 * 102.99798 * 2 1 4 4 C 1.39146 * 120.00700 * 0.02562 * 3 2 1 5 5 C 1.38224 * 120.22741 * 179.97438 * 4 3 2 6 6 C 1.38006 * 120.23294 * 359.78113 * 5 4 3 7 7 C 1.39699 * 120.00801 * 0.47532 * 6 5 4 8 8 C 1.47832 * 120.11277 * 179.78730 * 7 6 5 9 9 N 1.32575 * 119.99360 * 136.42431 * 8 7 6 10 10 C 1.31740 * 121.72350 * 180.02562 * 9 8 7 11 11 C 1.38874 * 121.50555 * 359.97438 * 10 9 8 12 12 C 1.36884 * 119.79678 * 0.02562 * 11 10 9 13 13 C 1.41130 * 118.39368 * 359.72031 * 12 11 10 14 14 C 1.40889 * 120.72055 * 180.29465 * 13 12 11 15 15 H 1.07998 * 120.00045 * 151.87178 * 14 13 12 16 16 C 1.40071 * 119.99750 * 331.86982 * 14 13 12 17 17 N 1.30774 * 119.99980 * 348.00307 * 16 14 13 18 18 Si 1.86792 * 119.99933 * 167.99996 * 16 14 13 19 19 H 1.48507 * 109.47156 * 60.00099 * 18 16 14 20 20 H 1.48502 * 109.47269 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47458 * 299.99954 * 18 16 14 22 22 C 1.38648 * 120.00417 * 179.97438 * 3 2 1 23 23 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47435 * 300.00090 * 1 2 3 25 25 H 1.09001 * 109.47018 * 60.00230 * 1 2 3 26 26 H 1.08006 * 119.88642 * 359.97438 * 4 3 2 27 27 H 1.08000 * 119.87978 * 180.02562 * 5 4 3 28 28 H 1.08003 * 119.99216 * 180.25516 * 6 5 4 29 29 H 1.08001 * 119.25047 * 179.97438 * 10 9 8 30 30 H 1.07999 * 120.09974 * 180.02562 * 11 10 9 31 31 H 1.08001 * 120.80565 * 180.02562 * 12 11 10 32 32 H 0.96998 * 120.00410 * 180.02562 * 17 16 14 33 33 H 1.08001 * 120.11667 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1928 2.6659 0.0005 5 6 1.4985 4.0139 0.0011 6 6 2.8150 4.4279 0.0056 7 6 3.8444 3.4835 -0.0003 8 6 5.2554 3.9244 -0.0002 9 7 6.1372 3.3243 0.7872 10 6 7.4026 3.6897 0.8149 11 6 7.8770 4.7237 0.0185 12 6 7.0197 5.3862 -0.8181 13 6 5.6667 4.9859 -0.8467 14 6 4.7434 5.6297 -1.6940 15 1 3.8831 5.0914 -2.0635 16 6 4.9412 6.9680 -2.0571 17 7 5.8382 7.6885 -1.4354 18 14 3.9239 7.7236 -3.4294 19 1 2.4840 7.6579 -3.0720 20 1 4.3224 9.1417 -3.6179 21 1 4.1559 6.9721 -4.6891 22 6 3.5362 2.1224 0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.1605 2.3482 0.0005 27 1 0.7043 4.7457 0.0019 28 1 3.0494 5.4822 0.0102 29 1 8.0867 3.1733 1.4720 30 1 8.9191 5.0043 0.0591 31 1 7.3713 6.1925 -1.4448 32 1 5.9750 8.6154 -1.6865 33 1 4.3277 1.3875 0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241311892.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:15 Heat of formation + Delta-G solvation = 29.291373 kcal Electronic energy + Delta-G solvation = -17537.599516 eV Core-core repulsion = 14845.938650 eV Total energy + Delta-G solvation = -2691.660866 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.68226 -39.21590 -36.02566 -33.60905 -32.57802 -31.75975 -30.71103 -29.38499 -27.54586 -24.48012 -23.86408 -22.97994 -21.93981 -19.31724 -18.60724 -17.45136 -17.07014 -16.64411 -16.40417 -15.70762 -15.58011 -15.16902 -14.68561 -14.58082 -14.29593 -14.17452 -13.88088 -13.45367 -13.37064 -13.22713 -13.10495 -12.78566 -12.44407 -12.28105 -12.12015 -11.62476 -11.21982 -11.10131 -10.66443 -10.27321 -9.97806 -9.92985 -9.17496 -8.69751 -8.29285 -6.43668 0.14024 0.43750 0.64030 0.86902 1.15171 1.38235 1.49014 1.52330 1.57848 2.16387 2.70188 2.86534 3.65977 3.81303 4.06699 4.15120 4.33371 4.34470 4.45661 4.54218 4.54259 4.65898 4.76981 4.89445 4.90388 5.03135 5.08900 5.17241 5.23783 5.39639 5.58019 5.74407 5.80804 5.97674 6.00931 6.08945 6.47535 6.71011 6.77231 7.67204 8.21705 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017795 B = 0.006410 C = 0.004962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.106772 B = 4367.384165 C = 5641.163133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 S -0.162 6.162 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.103 4.103 6 C -0.111 4.111 7 C 0.012 3.988 8 C -0.008 4.008 9 N -0.472 5.472 10 C -0.040 4.040 11 C -0.148 4.148 12 C -0.151 4.151 13 C 0.058 3.942 14 C -0.456 4.456 15 H 0.085 0.915 16 C 0.039 3.961 17 N -0.816 5.816 18 Si 0.978 3.022 19 H -0.253 1.253 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.105 4.105 23 H 0.128 0.872 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.154 0.846 27 H 0.153 0.847 28 H 0.118 0.882 29 H 0.152 0.848 30 H 0.132 0.868 31 H 0.120 0.880 32 H 0.294 0.706 33 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.320 -5.320 -0.551 11.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.078 5.922 3 C -0.204 4.204 4 C -0.163 4.163 5 C -0.123 4.123 6 C -0.132 4.132 7 C 0.009 3.991 8 C -0.145 4.145 9 N -0.180 5.180 10 C -0.201 4.201 11 C -0.168 4.168 12 C -0.177 4.177 13 C 0.054 3.946 14 C -0.485 4.485 15 H 0.103 0.897 16 C -0.178 4.178 17 N -0.440 5.440 18 Si 0.799 3.201 19 H -0.176 1.176 20 H -0.190 1.190 21 H -0.187 1.187 22 C -0.129 4.129 23 H 0.146 0.854 24 H 0.113 0.887 25 H 0.112 0.888 26 H 0.172 0.828 27 H 0.171 0.829 28 H 0.136 0.864 29 H 0.169 0.831 30 H 0.149 0.851 31 H 0.138 0.862 32 H 0.105 0.895 33 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.839 -6.810 0.007 11.966 hybrid contribution -0.009 2.345 -0.929 2.523 sum -9.847 -4.465 -0.922 10.851 Atomic orbital electron populations 1.23754 0.90924 1.08525 1.06634 1.85461 1.10593 1.02818 1.93320 1.21631 0.95840 0.97382 1.05596 1.21418 0.98716 0.92516 1.03687 1.21231 0.95756 0.96130 0.99138 1.21452 0.92605 0.99553 0.99562 1.18434 0.91102 0.92552 0.96986 1.19948 0.92590 1.01706 1.00300 1.67093 1.03510 1.27661 1.19710 1.22246 0.92194 1.00745 1.04921 1.21753 1.00367 0.96984 0.97684 1.21506 0.93123 1.01547 1.01513 1.18690 0.93524 0.91252 0.91151 1.19686 1.08185 0.96339 1.24261 0.89711 1.26780 0.96056 0.97177 0.97758 1.69776 1.29107 1.09627 1.35515 0.85278 0.79434 0.77512 0.77915 1.17645 1.19004 1.18675 1.20744 0.94699 0.94787 1.02668 0.85389 0.88717 0.88758 0.82805 0.82890 0.86396 0.83102 0.85062 0.86247 0.89545 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 9.15 113.37 1.04 -1.09 16 2 S -0.16 -4.55 22.56 -56.49 -1.27 -5.82 16 3 C -0.09 -3.22 6.11 22.59 0.14 -3.08 16 4 C -0.14 -4.18 9.36 22.48 0.21 -3.97 16 5 C -0.10 -3.35 10.02 22.21 0.22 -3.13 16 6 C -0.11 -4.62 7.84 22.57 0.18 -4.44 16 7 C 0.01 0.55 5.25 -20.07 -0.11 0.45 16 8 C -0.01 -0.40 6.43 42.47 0.27 -0.13 16 9 N -0.47 -24.21 10.14 -182.91 -1.86 -26.07 16 10 C -0.04 -1.88 11.16 84.86 0.95 -0.93 16 11 C -0.15 -6.80 10.03 22.10 0.22 -6.58 16 12 C -0.15 -7.77 8.72 22.66 0.20 -7.57 16 13 C 0.06 3.12 5.54 -21.02 -0.12 3.00 16 14 C -0.46 -23.14 6.73 23.36 0.16 -22.99 16 15 H 0.08 4.23 6.48 -2.91 -0.02 4.21 16 16 C 0.04 1.83 5.25 85.30 0.45 2.28 16 17 N -0.82 -39.76 10.90 21.85 0.24 -39.52 16 18 Si 0.98 35.61 29.58 68.60 2.03 37.64 16 19 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 20 H -0.27 -9.14 7.11 99.48 0.71 -8.43 16 21 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 22 C -0.10 -4.48 9.40 22.69 0.21 -4.27 16 23 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.09 1.36 7.74 -2.39 -0.02 1.35 16 25 H 0.09 1.37 7.74 -2.39 -0.02 1.35 16 26 H 0.15 3.30 5.86 -2.91 -0.02 3.28 16 27 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 28 H 0.12 5.28 6.75 -2.91 -0.02 5.26 16 29 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 30 H 0.13 5.04 8.06 -2.91 -0.02 5.01 16 31 H 0.12 6.22 6.32 -2.91 -0.02 6.20 16 32 H 0.29 12.91 8.29 -92.71 -0.77 12.14 16 33 H 0.10 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -61.18 295.07 4.29 -56.90 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 1.13 Total: 29.31 kcal Atomic # 6 Polarization: -56.46 SS G_CDS: 4.02 Total: -52.44 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -1.62 Total: -65.59 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -1.27 Total: -5.82 kcal Total: -61.18 4.29 -56.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241311892.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.188 kcal (2) G-P(sol) polarization free energy of solvation -61.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds