Wall clock time and date at job start Mon Mar 30 2020 00:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81395 * 1 3 3 C 1.76204 * 102.99957 * 2 1 4 4 C 1.39071 * 120.01707 * 359.97438 * 3 2 1 5 5 C 1.38156 * 120.17384 * 180.02562 * 4 3 2 6 6 C 1.38091 * 120.20680 * 359.97438 * 5 4 3 7 7 C 1.39409 * 120.03738 * 0.02562 * 6 5 4 8 8 C 1.48324 * 120.08725 * 180.02562 * 7 6 5 9 9 C 1.39896 * 119.60868 * 5.01920 * 8 7 6 10 10 C 1.38686 * 119.46327 * 179.97438 * 9 8 7 11 11 C 1.38290 * 118.69520 * 359.74817 * 10 9 8 12 12 C 1.40684 * 119.17839 * 0.49752 * 11 10 9 13 13 C 1.41380 * 119.76498 * 179.77181 * 12 11 10 14 14 H 1.08008 * 119.99920 * 0.39946 * 13 12 11 15 15 C 1.40015 * 120.00345 * 180.39639 * 13 12 11 16 16 N 1.30749 * 120.00340 * 177.23804 * 15 13 12 17 17 Si 1.86801 * 119.99638 * 356.96915 * 15 13 12 18 18 H 1.48501 * 109.46946 * 180.26936 * 17 15 13 19 19 H 1.48494 * 109.47095 * 300.27248 * 17 15 13 20 20 H 1.48502 * 109.47363 * 60.27581 * 17 15 13 21 21 N 1.32219 * 119.60596 * 184.99912 * 8 7 6 22 22 C 1.38740 * 120.01817 * 180.25549 * 3 2 1 23 23 H 1.09001 * 109.47092 * 300.00039 * 1 2 3 24 24 H 1.09000 * 109.47385 * 59.99934 * 1 2 3 25 25 H 1.08999 * 109.47116 * 179.97438 * 1 2 3 26 26 H 1.08000 * 119.91639 * 0.02562 * 4 3 2 27 27 H 1.08002 * 119.89621 * 179.97438 * 5 4 3 28 28 H 1.08003 * 119.97829 * 179.97438 * 6 5 4 29 29 H 1.08001 * 120.26374 * 0.02562 * 9 8 7 30 30 H 1.08011 * 120.65569 * 180.02562 * 10 9 8 31 31 H 1.07998 * 120.41417 * 180.27014 * 11 10 9 32 32 H 0.96997 * 120.00037 * 354.19177 * 16 15 13 33 33 H 1.08003 * 120.10419 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 1.1935 2.6656 -0.0005 5 6 1.5006 4.0126 -0.0011 6 6 2.8186 4.4248 -0.0005 7 6 3.8448 3.4812 0.0000 8 6 5.2608 3.9226 0.0011 9 6 5.5600 5.2850 0.1081 10 6 6.8851 5.6943 0.1094 11 6 7.8764 4.7353 0.0094 12 6 7.5119 3.3810 -0.1006 13 6 8.5151 2.3907 -0.2084 14 1 9.5572 2.6744 -0.1995 15 6 8.1579 1.0420 -0.3265 16 7 9.0835 0.1315 -0.4805 17 14 6.3591 0.5429 -0.2568 18 1 6.2487 -0.9312 -0.3984 19 1 5.7799 0.9599 1.0454 20 1 5.6189 1.2030 -1.3620 21 7 6.2253 3.0237 -0.0985 22 6 3.5369 2.1229 -0.0054 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 0.1610 2.3487 -0.0005 27 1 0.7074 4.7456 -0.0019 28 1 3.0544 5.4787 -0.0014 29 1 4.7655 6.0120 0.1898 30 1 7.1380 6.7412 0.1914 31 1 8.9174 5.0228 0.0122 32 1 10.0094 0.3961 -0.5973 33 1 4.3284 1.3881 -0.0100 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241313688.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:20 Heat of formation + Delta-G solvation = 27.146868 kcal Electronic energy + Delta-G solvation = -17616.767306 eV Core-core repulsion = 14925.013448 eV Total energy + Delta-G solvation = -2691.753859 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.98104 -39.52027 -35.93299 -33.81521 -33.22581 -31.94431 -30.97769 -29.56108 -27.40864 -24.94532 -24.22016 -22.74852 -22.03920 -20.41087 -19.01107 -17.68545 -17.13022 -16.79777 -16.27264 -16.13177 -15.73700 -15.14157 -15.06648 -14.68454 -14.60537 -14.41576 -14.22752 -13.75215 -13.69043 -13.38782 -12.83778 -12.80054 -12.36679 -12.16886 -11.81163 -11.67088 -11.53154 -11.10465 -10.93600 -10.52411 -10.32719 -9.73684 -9.32517 -9.27640 -8.45899 -6.88271 -0.24645 0.26023 0.53268 0.68476 1.03322 1.41909 1.53093 1.55460 1.87112 2.27957 2.47269 2.81453 3.40233 3.56703 3.84734 4.01022 4.18648 4.24026 4.31218 4.32693 4.44907 4.54273 4.62421 4.66672 4.73439 4.85300 4.88047 5.05609 5.24569 5.32862 5.34321 5.38381 5.52633 5.62611 5.79213 5.91491 5.98711 6.32031 6.57208 7.48993 7.89568 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.018099 B = 0.007711 C = 0.005428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.679766 B = 3630.193796 C = 5157.248325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.192 6.192 3 C -0.096 4.096 4 C -0.122 4.122 5 C -0.091 4.091 6 C -0.100 4.100 7 C -0.047 4.047 8 C 0.175 3.825 9 C -0.268 4.268 10 C -0.036 4.036 11 C -0.273 4.273 12 C 0.233 3.767 13 C -0.511 4.511 14 H 0.073 0.927 15 C 0.017 3.983 16 N -0.831 5.831 17 Si 1.187 2.813 18 H -0.334 1.334 19 H -0.299 1.299 20 H -0.290 1.290 21 N -0.591 5.591 22 C -0.123 4.123 23 H 0.101 0.899 24 H 0.100 0.900 25 H 0.127 0.873 26 H 0.162 0.838 27 H 0.177 0.823 28 H 0.159 0.841 29 H 0.157 0.843 30 H 0.157 0.843 31 H 0.117 0.883 32 H 0.284 0.716 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.744 7.188 1.004 21.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S 0.049 5.951 3 C -0.209 4.209 4 C -0.146 4.146 5 C -0.110 4.110 6 C -0.121 4.121 7 C -0.049 4.049 8 C 0.037 3.963 9 C -0.291 4.291 10 C -0.060 4.060 11 C -0.295 4.295 12 C 0.108 3.892 13 C -0.544 4.544 14 H 0.091 0.909 15 C -0.199 4.199 16 N -0.455 5.455 17 Si 1.025 2.975 18 H -0.268 1.268 19 H -0.229 1.229 20 H -0.220 1.220 21 N -0.311 5.311 22 C -0.147 4.147 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.145 0.855 26 H 0.179 0.821 27 H 0.195 0.805 28 H 0.176 0.824 29 H 0.175 0.825 30 H 0.175 0.825 31 H 0.135 0.865 32 H 0.095 0.905 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -20.085 3.946 0.932 20.490 hybrid contribution 1.869 2.687 0.021 3.274 sum -18.216 6.634 0.954 19.410 Atomic orbital electron populations 1.23771 0.89395 1.08793 1.07089 1.85997 1.12172 1.03971 1.92990 1.21729 0.95910 0.97350 1.05876 1.21648 0.98674 0.93039 1.01207 1.21457 0.96339 0.95718 0.97513 1.21595 0.91829 0.99951 0.98764 1.18854 0.91519 0.93140 1.01395 1.20041 0.91377 0.91043 0.93800 1.21699 0.97752 0.94486 1.15113 1.21470 0.92065 0.99725 0.92745 1.21906 1.00026 0.93091 1.14434 1.18788 0.88821 0.93211 0.88360 1.20754 0.94258 0.93374 1.46051 0.90893 1.28224 1.10061 0.92908 0.88751 1.70646 1.04001 1.37475 1.33370 0.81610 0.68256 0.69393 0.78230 1.26844 1.22887 1.21992 1.66118 1.01304 1.37209 1.26456 1.21436 0.95623 0.96654 1.00954 0.88052 0.88111 0.85512 0.82055 0.80531 0.82397 0.82547 0.82534 0.86519 0.90513 0.87860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.84 9.15 113.37 1.04 -0.80 16 2 S -0.19 -5.76 22.56 -56.49 -1.27 -7.03 16 3 C -0.10 -3.20 6.11 22.59 0.14 -3.06 16 4 C -0.12 -2.85 9.36 22.45 0.21 -2.64 16 5 C -0.09 -1.90 10.03 22.22 0.22 -1.68 16 6 C -0.10 -2.76 9.41 22.52 0.21 -2.55 16 7 C -0.05 -1.84 5.87 -20.06 -0.12 -1.96 16 8 C 0.18 7.97 6.73 42.17 0.28 8.25 16 9 C -0.27 -10.00 9.47 22.78 0.22 -9.79 16 10 C -0.04 -1.36 10.15 22.39 0.23 -1.13 16 11 C -0.27 -12.57 9.83 22.88 0.22 -12.34 16 12 C 0.23 12.79 6.43 40.26 0.26 13.04 16 13 C -0.51 -30.11 9.58 23.47 0.22 -29.88 16 14 H 0.07 4.27 8.06 -2.91 -0.02 4.25 16 15 C 0.02 1.04 5.52 85.28 0.47 1.51 16 16 N -0.83 -49.30 13.65 21.83 0.30 -49.00 16 17 Si 1.19 65.94 22.00 68.60 1.51 67.45 16 18 H -0.33 -18.27 7.11 99.48 0.71 -17.56 16 19 H -0.30 -16.78 6.62 99.48 0.66 -16.12 16 20 H -0.29 -16.22 6.32 99.48 0.63 -15.59 16 21 N -0.59 -31.86 4.18 -178.19 -0.75 -32.61 16 22 C -0.12 -5.23 9.03 22.64 0.20 -5.03 16 23 H 0.10 1.19 7.74 -2.39 -0.02 1.17 16 24 H 0.10 1.20 7.74 -2.39 -0.02 1.18 16 25 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.16 2.41 5.86 -2.91 -0.02 2.40 16 27 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 28 H 0.16 3.33 6.19 -2.91 -0.02 3.31 16 29 H 0.16 4.30 6.20 -2.91 -0.02 4.28 16 30 H 0.16 4.31 8.06 -2.90 -0.02 4.29 16 31 H 0.12 5.02 8.06 -2.91 -0.02 4.99 16 32 H 0.28 16.05 8.73 -92.71 -0.81 15.24 16 33 H 0.10 5.10 2.10 -2.91 -0.01 5.09 16 Total: -1.00 -73.56 284.03 4.58 -68.98 By element: Atomic # 1 Polarization: -0.71 SS G_CDS: 0.98 Total: 0.27 kcal Atomic # 6 Polarization: -51.87 SS G_CDS: 3.81 Total: -48.06 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -0.45 Total: -81.61 kcal Atomic # 14 Polarization: 65.94 SS G_CDS: 1.51 Total: 67.45 kcal Atomic # 16 Polarization: -5.76 SS G_CDS: -1.27 Total: -7.03 kcal Total: -73.56 4.58 -68.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241313688.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.128 kcal (2) G-P(sol) polarization free energy of solvation -73.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds