Wall clock time and date at job start Mon Mar 30 2020 00:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.76197 * 103.00045 * 2 1 4 4 C 1.39150 * 120.00960 * 359.72359 * 3 2 1 5 5 C 1.38211 * 120.21492 * 179.74445 * 4 3 2 6 6 C 1.38024 * 120.23095 * 0.55542 * 5 4 3 7 7 C 1.39656 * 120.00854 * 359.69808 * 6 5 4 8 8 C 1.47979 * 120.10678 * 180.02562 * 7 6 5 9 9 C 1.40264 * 120.34370 * 359.97438 * 8 7 6 10 10 C 1.36680 * 118.60678 * 179.97438 * 9 8 7 11 11 C 1.40873 * 119.25228 * 359.97438 * 10 9 8 12 12 C 1.40996 * 119.68230 * 180.02562 * 11 10 9 13 13 H 1.08004 * 119.99571 * 359.97438 * 12 11 10 14 14 C 1.40099 * 120.00111 * 180.02562 * 12 11 10 15 15 N 1.30714 * 119.99803 * 0.02562 * 14 12 11 16 16 Si 1.86795 * 119.99959 * 179.97438 * 14 12 11 17 17 H 1.48506 * 109.47082 * 60.00158 * 16 14 12 18 18 H 1.48501 * 109.47113 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47581 * 300.00063 * 16 14 12 20 20 N 1.33777 * 120.63847 * 359.97438 * 11 10 9 21 21 C 1.31195 * 121.50446 * 359.72754 * 20 11 10 22 22 C 1.38655 * 120.00684 * 180.02562 * 3 2 1 23 23 H 1.09001 * 109.46593 * 60.00110 * 1 2 3 24 24 H 1.09001 * 109.47186 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47070 * 300.00113 * 1 2 3 26 26 H 1.08002 * 119.88919 * 359.97438 * 4 3 2 27 27 H 1.07999 * 119.88613 * 180.25288 * 5 4 3 28 28 H 1.07995 * 119.99359 * 179.72066 * 6 5 4 29 29 H 1.08005 * 120.69624 * 359.94704 * 9 8 7 30 30 H 1.07998 * 120.37710 * 179.97438 * 10 9 8 31 31 H 0.97004 * 119.99925 * 179.97438 * 15 14 12 32 32 H 1.07996 * 119.65371 * 180.26671 * 21 20 11 33 33 H 1.08003 * 120.11819 * 359.94707 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 1.1929 2.6660 -0.0058 5 6 1.4989 4.0138 -0.0005 6 6 2.8157 4.4274 -0.0010 7 6 3.8445 3.4829 -0.0004 8 6 5.2570 3.9239 -0.0004 9 6 5.5727 5.2906 -0.0014 10 6 6.8891 5.6582 -0.0007 11 6 7.8827 4.6596 0.0015 12 6 9.2435 5.0286 0.0027 13 1 9.5198 6.0727 0.0015 14 6 10.2372 4.0409 0.0043 15 7 9.9026 2.7773 0.0042 16 14 12.0400 4.5299 0.0052 17 1 12.3336 5.3362 1.2173 18 1 12.8842 3.3082 0.0063 19 1 12.3355 5.3340 -1.2077 20 7 7.5476 3.3644 0.0034 21 6 6.2930 2.9809 0.0087 22 6 3.5363 2.1223 -0.0005 23 1 -0.3632 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.1606 2.3484 -0.0107 27 1 0.7050 4.7459 -0.0009 28 1 3.0505 5.4815 -0.0014 29 1 4.7918 6.0368 -0.0031 30 1 7.1645 6.7025 -0.0019 31 1 10.5906 2.0935 0.0050 32 1 6.0564 1.9272 0.0145 33 1 4.3278 1.3875 -0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241313839.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:36 Heat of formation + Delta-G solvation = 35.746713 kcal Electronic energy + Delta-G solvation = -16948.368593 eV Core-core repulsion = 14256.987652 eV Total energy + Delta-G solvation = -2691.380941 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59700 -39.28345 -35.73410 -33.61539 -32.70335 -31.72947 -30.79269 -29.55836 -27.30820 -24.61759 -24.08977 -22.63426 -21.94562 -19.50103 -18.60551 -17.57918 -17.16213 -16.48812 -16.05970 -15.93497 -15.32961 -15.03751 -14.73312 -14.45319 -14.42488 -14.34309 -13.93116 -13.60728 -13.34194 -13.04156 -12.86573 -12.75162 -12.48956 -12.26693 -11.91357 -11.77305 -11.42137 -11.10221 -10.79550 -10.36357 -10.10049 -9.56344 -9.00782 -8.39064 -8.34602 -6.54373 0.01859 0.39765 0.62045 1.02730 1.24475 1.39402 1.53004 1.55278 1.57598 2.18497 2.67287 3.03446 3.90593 3.91032 3.98677 4.10327 4.23598 4.30256 4.31628 4.34248 4.52403 4.55535 4.75830 4.85929 4.86773 4.98355 5.07315 5.11846 5.32976 5.41161 5.43224 5.55450 5.71017 5.98426 6.04746 6.07842 6.21078 6.61824 6.85528 8.08555 8.33616 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.034234 B = 0.003913 C = 0.003519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.713655 B = 7153.104530 C = 7955.670413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.169 6.169 3 C -0.078 4.078 4 C -0.162 4.162 5 C -0.086 4.086 6 C -0.153 4.153 7 C 0.019 3.981 8 C -0.270 4.270 9 C -0.036 4.036 10 C -0.285 4.285 11 C 0.217 3.783 12 C -0.447 4.447 13 H 0.098 0.902 14 C 0.018 3.982 15 N -0.745 5.745 16 Si 0.994 3.006 17 H -0.256 1.256 18 H -0.268 1.268 19 H -0.256 1.256 20 N -0.523 5.523 21 C 0.131 3.869 22 C -0.141 4.141 23 H 0.094 0.906 24 H 0.126 0.874 25 H 0.094 0.906 26 H 0.149 0.851 27 H 0.157 0.843 28 H 0.132 0.868 29 H 0.136 0.864 30 H 0.118 0.882 31 H 0.283 0.717 32 H 0.127 0.873 33 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.708 -1.069 0.001 14.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 S 0.072 5.928 3 C -0.190 4.190 4 C -0.185 4.185 5 C -0.105 4.105 6 C -0.173 4.173 7 C 0.016 3.984 8 C -0.276 4.276 9 C -0.059 4.059 10 C -0.307 4.307 11 C 0.094 3.906 12 C -0.476 4.476 13 H 0.116 0.884 14 C -0.205 4.205 15 N -0.366 5.366 16 Si 0.813 3.187 17 H -0.180 1.180 18 H -0.192 1.192 19 H -0.180 1.180 20 N -0.235 5.235 21 C -0.036 4.036 22 C -0.165 4.165 23 H 0.113 0.887 24 H 0.144 0.856 25 H 0.113 0.887 26 H 0.166 0.834 27 H 0.174 0.826 28 H 0.150 0.850 29 H 0.154 0.846 30 H 0.136 0.864 31 H 0.094 0.906 32 H 0.145 0.855 33 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.266 -2.944 -0.001 13.589 hybrid contribution -0.371 1.613 -0.001 1.655 sum -13.637 -1.331 -0.002 13.702 Atomic orbital electron populations 1.23745 0.90888 1.08471 1.06633 1.85629 1.10679 1.03450 1.93015 1.21654 0.96118 0.97020 1.04240 1.21383 0.98509 0.92959 1.05684 1.21257 0.96167 0.95817 0.97260 1.21425 0.92562 0.99548 1.03746 1.18755 0.92025 0.92682 0.94930 1.19330 0.92486 0.94301 1.21446 1.21016 0.95851 0.94790 0.94242 1.21654 0.93836 0.99435 1.15823 1.19163 0.94684 0.87803 0.88954 1.20152 0.90202 0.95553 1.41725 0.88384 1.27175 1.06597 0.94213 0.92495 1.70221 1.37070 1.01888 1.27395 0.85093 0.74332 0.78971 0.80344 1.17951 1.19242 1.17970 1.68738 1.17584 1.18096 1.19117 1.23025 0.89148 0.98580 0.92814 1.20774 0.94853 0.95335 1.05538 0.88696 0.85587 0.88696 0.83364 0.82553 0.84978 0.84639 0.86409 0.90613 0.85544 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 9.15 113.37 1.04 -0.85 16 2 S -0.17 -4.39 22.56 -56.49 -1.27 -5.66 16 3 C -0.08 -2.41 6.11 22.59 0.14 -2.27 16 4 C -0.16 -4.09 9.36 22.48 0.21 -3.88 16 5 C -0.09 -2.15 10.02 22.21 0.22 -1.93 16 6 C -0.15 -4.82 9.44 22.56 0.21 -4.60 16 7 C 0.02 0.73 5.88 -20.05 -0.12 0.61 16 8 C -0.27 -12.36 5.92 -19.75 -0.12 -12.48 16 9 C -0.04 -1.58 9.46 22.40 0.21 -1.37 16 10 C -0.29 -13.89 9.76 22.55 0.22 -13.67 16 11 C 0.22 12.12 6.55 40.17 0.26 12.38 16 12 C -0.45 -23.91 9.12 23.40 0.21 -23.69 16 13 H 0.10 4.78 7.85 -2.91 -0.02 4.76 16 14 C 0.02 0.93 5.50 85.31 0.47 1.40 16 15 N -0.75 -40.29 11.44 21.85 0.25 -40.04 16 16 Si 0.99 37.15 29.56 68.60 2.03 39.17 16 17 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 18 H -0.27 -9.58 7.11 99.48 0.71 -8.87 16 19 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 20 N -0.52 -30.06 7.83 -188.23 -1.47 -31.54 16 21 C 0.13 6.74 10.60 85.24 0.90 7.64 16 22 C -0.14 -5.27 9.18 22.67 0.21 -5.07 16 23 H 0.09 1.19 7.73 -2.39 -0.02 1.17 16 24 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.09 1.19 7.76 -2.39 -0.02 1.18 16 26 H 0.15 2.67 5.86 -2.91 -0.02 2.66 16 27 H 0.16 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.13 3.75 6.24 -2.91 -0.02 3.73 16 29 H 0.14 4.83 6.29 -2.91 -0.02 4.82 16 30 H 0.12 5.15 8.06 -2.91 -0.02 5.13 16 31 H 0.28 13.79 8.29 -92.71 -0.77 13.02 16 32 H 0.13 6.09 6.21 -2.91 -0.02 6.08 16 33 H 0.11 4.29 6.22 -2.91 -0.02 4.27 16 Total: -1.00 -65.56 295.47 4.74 -60.82 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 1.14 Total: 25.01 kcal Atomic # 6 Polarization: -51.85 SS G_CDS: 4.08 Total: -47.77 kcal Atomic # 7 Polarization: -70.35 SS G_CDS: -1.22 Total: -71.58 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.17 kcal Atomic # 16 Polarization: -4.39 SS G_CDS: -1.27 Total: -5.66 kcal Total: -65.56 4.74 -60.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241313839.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.571 kcal (2) G-P(sol) polarization free energy of solvation -65.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.824 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds