Wall clock time and date at job start Mon Mar 30 2020 00:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76201 * 103.00361 * 2 1 4 4 C 1.39165 * 120.00299 * 0.27363 * 3 2 1 5 5 C 1.38223 * 120.22117 * 180.25083 * 4 3 2 6 6 C 1.38009 * 120.23573 * 359.45158 * 5 4 3 7 7 C 1.39707 * 120.00554 * 0.29589 * 6 5 4 8 8 C 1.47856 * 120.11131 * 179.97438 * 7 6 5 9 9 C 1.39299 * 120.78263 * 129.71908 * 8 7 6 10 10 N 1.31678 * 120.66302 * 179.73251 * 9 8 7 11 11 C 1.32212 * 122.49961 * 0.59032 * 10 9 8 12 12 C 1.36480 * 121.50924 * 359.67635 * 11 10 9 13 13 C 1.41122 * 119.10555 * 0.02563 * 12 11 10 14 14 C 1.40932 * 121.10926 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99940 * 154.59052 * 14 13 12 16 16 C 1.40175 * 119.99949 * 334.58383 * 14 13 12 17 17 N 1.30688 * 120.00029 * 344.36551 * 16 14 13 18 18 Si 1.86797 * 120.00154 * 164.36019 * 16 14 13 19 19 H 1.48501 * 109.46951 * 60.00458 * 18 16 14 20 20 H 1.48502 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47318 * 300.00411 * 18 16 14 22 22 C 1.38643 * 120.00673 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47125 * 59.99454 * 1 2 3 24 24 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47019 * 299.99915 * 1 2 3 26 26 H 1.07999 * 119.88997 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.88194 * 179.72560 * 5 4 3 28 28 H 1.08001 * 119.99192 * 180.27328 * 6 5 4 29 29 H 1.08002 * 119.66926 * 359.97438 * 9 8 7 30 30 H 1.07997 * 119.24283 * 179.70074 * 11 10 9 31 31 H 1.07997 * 120.44916 * 180.02562 * 12 11 10 32 32 H 0.96991 * 120.00288 * 179.97438 * 17 16 14 33 33 H 1.07996 * 120.11773 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1928 2.6660 0.0058 5 6 1.4986 4.0140 0.0006 6 6 2.8152 4.4279 0.0010 7 6 3.8445 3.4833 0.0005 8 6 5.2558 3.9241 0.0005 9 6 6.1645 3.4064 0.9207 10 7 7.4220 3.7967 0.9151 11 6 7.8837 4.6936 0.0604 12 6 7.0755 5.2664 -0.8784 13 6 5.7162 4.8912 -0.9352 14 6 4.8442 5.4555 -1.8877 15 1 3.9670 4.9117 -2.2057 16 6 5.1154 6.7225 -2.4224 17 7 5.9810 7.5073 -1.8367 18 14 4.2399 7.2894 -3.9720 19 1 2.7742 7.3067 -3.7342 20 1 4.7001 8.6554 -4.3291 21 1 4.5498 6.3565 -5.0851 22 6 3.5363 2.1222 -0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.1606 2.3484 0.0106 27 1 0.7045 4.7460 0.0006 28 1 3.0497 5.4821 0.0014 29 1 5.8351 2.6745 1.6434 30 1 8.9242 4.9791 0.1059 31 1 7.4708 5.9970 -1.5686 32 1 6.1689 8.3839 -2.2068 33 1 4.3277 1.3874 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241316188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:59 Heat of formation + Delta-G solvation = 39.343092 kcal Electronic energy + Delta-G solvation = -17503.681460 eV Core-core repulsion = 14812.456470 eV Total energy + Delta-G solvation = -2691.224991 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.99694 -37.68463 -34.29325 -32.27509 -30.61023 -30.20759 -29.29960 -27.95843 -26.06724 -22.78207 -22.35816 -21.29867 -20.29503 -17.74816 -17.01655 -15.87084 -15.64076 -14.93177 -14.52320 -14.43435 -14.14619 -13.86689 -13.77130 -13.13080 -12.80611 -12.56058 -12.44302 -12.28383 -12.11672 -11.53284 -11.37952 -11.17743 -11.00622 -10.86774 -10.42601 -10.01817 -9.83758 -9.55987 -9.27064 -8.65450 -8.07021 -7.93779 -7.47810 -7.10461 -6.95841 -4.70474 1.67325 1.72567 1.85539 2.60005 2.68363 2.79282 2.94191 2.97092 3.17447 3.74865 4.31325 4.52703 5.02215 5.03154 5.28840 5.36636 5.55166 5.58476 5.70387 5.84872 6.00461 6.01479 6.24535 6.33477 6.57362 6.67869 6.78145 6.81134 6.98935 6.99391 7.25410 7.30013 7.41942 7.51646 7.76508 7.98884 8.32912 8.58271 8.62323 9.54377 9.90365 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.006333 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.152764 B = 4419.899297 C = 5628.745495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.139 6.139 3 C -0.085 4.085 4 C -0.157 4.157 5 C -0.108 4.108 6 C -0.099 4.099 7 C 0.043 3.957 8 C -0.239 4.239 9 C 0.132 3.868 10 N -0.578 5.578 11 C 0.082 3.918 12 C -0.208 4.208 13 C 0.147 3.853 14 C -0.441 4.441 15 H 0.087 0.913 16 C 0.078 3.922 17 N -0.777 5.777 18 Si 0.910 3.090 19 H -0.262 1.262 20 H -0.276 1.276 21 H -0.261 1.261 22 C -0.107 4.107 23 H 0.081 0.919 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.131 0.869 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.126 0.874 32 H 0.286 0.714 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.162 -5.432 0.184 10.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.309 4.309 2 S 0.101 5.899 3 C -0.197 4.197 4 C -0.180 4.180 5 C -0.128 4.128 6 C -0.119 4.119 7 C 0.040 3.960 8 C -0.245 4.245 9 C -0.026 4.026 10 N -0.292 5.292 11 C -0.065 4.065 12 C -0.230 4.230 13 C 0.139 3.861 14 C -0.471 4.471 15 H 0.105 0.895 16 C -0.143 4.143 17 N -0.401 5.401 18 Si 0.733 3.267 19 H -0.186 1.186 20 H -0.201 1.201 21 H -0.185 1.185 22 C -0.130 4.130 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.100 0.900 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.149 0.851 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.098 0.902 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.772 -6.573 0.774 10.209 hybrid contribution -1.804 1.936 -1.375 2.982 sum -9.576 -4.637 -0.601 10.657 Atomic orbital electron populations 1.23575 0.95496 1.06362 1.05419 1.85330 1.05691 1.05205 1.93660 1.21394 0.96661 0.95012 1.06648 1.20943 0.97182 0.93324 1.06572 1.20899 0.96619 0.94725 1.00579 1.21496 0.91412 1.00551 0.98464 1.18610 0.93033 0.91043 0.93303 1.19505 0.92030 1.09511 1.03467 1.22101 0.88792 0.96227 0.95504 1.67333 1.15780 1.17893 1.28181 1.21739 0.98467 0.93629 0.92661 1.21908 0.94066 1.04626 1.02386 1.17716 0.91878 0.87572 0.88887 1.19599 1.08360 1.00440 1.18678 0.89514 1.26030 0.94361 0.96364 0.97539 1.69728 1.26731 1.08090 1.35593 0.86313 0.80572 0.78281 0.81486 1.18595 1.20054 1.18516 1.20890 0.93561 0.95717 1.02848 0.90026 0.87990 0.90042 0.86988 0.86542 0.85091 0.86052 0.86364 0.85619 0.90231 0.86125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.39 9.15 101.05 0.92 -0.47 16 2 S -0.14 -1.98 22.56 -107.50 -2.43 -4.40 16 3 C -0.09 -1.45 6.11 -39.09 -0.24 -1.69 16 4 C -0.16 -2.48 9.36 -39.24 -0.37 -2.84 16 5 C -0.11 -1.81 10.02 -39.67 -0.40 -2.21 16 6 C -0.10 -1.95 8.07 -39.12 -0.32 -2.27 16 7 C 0.04 0.90 4.99 -104.92 -0.52 0.38 16 8 C -0.24 -5.63 5.54 -104.04 -0.58 -6.21 16 9 C 0.13 3.06 10.71 -17.22 -0.18 2.87 16 10 N -0.58 -13.94 10.32 -13.37 -0.14 -14.08 16 11 C 0.08 1.95 11.09 -18.02 -0.20 1.75 16 12 C -0.21 -5.18 8.72 -39.12 -0.34 -5.52 16 13 C 0.15 3.71 5.59 -106.26 -0.59 3.12 16 14 C -0.44 -10.77 7.29 -37.84 -0.28 -11.05 16 15 H 0.09 2.10 6.70 -52.49 -0.35 1.74 16 16 C 0.08 1.81 5.21 -17.31 -0.09 1.72 16 17 N -0.78 -18.51 10.95 55.56 0.61 -17.91 16 18 Si 0.91 17.48 29.59 -169.99 -5.03 12.45 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.57 16 20 H -0.28 -5.15 7.11 56.52 0.40 -4.74 16 21 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 22 C -0.11 -2.05 9.29 -38.94 -0.36 -2.41 16 23 H 0.08 0.78 7.76 -51.92 -0.40 0.37 16 24 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 0.76 7.73 -51.92 -0.40 0.35 16 26 H 0.11 1.45 5.86 -52.49 -0.31 1.14 16 27 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 28 H 0.13 2.72 7.36 -52.49 -0.39 2.33 16 29 H 0.12 2.51 8.05 -52.49 -0.42 2.08 16 30 H 0.12 2.47 8.06 -52.49 -0.42 2.05 16 31 H 0.13 3.16 6.27 -52.49 -0.33 2.83 16 32 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 33 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 296.21 15.07 4.46 4.46 Total: -1.00 -26.57 296.21 -9.49 -36.05 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -3.43 Total: 8.24 kcal Atomic # 6 Polarization: -21.28 SS G_CDS: -3.54 Total: -24.82 kcal Atomic # 7 Polarization: -32.45 SS G_CDS: 0.47 Total: -31.98 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.43 Total: -4.40 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -26.57 -9.49 -36.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241316188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.398 kcal (2) G-P(sol) polarization free energy of solvation -26.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds