Wall clock time and date at job start Mon Mar 30 2020 00:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76201 * 103.00361 * 2 1 4 4 C 1.39165 * 120.00299 * 0.27363 * 3 2 1 5 5 C 1.38223 * 120.22117 * 180.25083 * 4 3 2 6 6 C 1.38009 * 120.23573 * 359.45158 * 5 4 3 7 7 C 1.39707 * 120.00554 * 0.29589 * 6 5 4 8 8 C 1.47856 * 120.11131 * 179.97438 * 7 6 5 9 9 C 1.39299 * 120.78263 * 129.71908 * 8 7 6 10 10 N 1.31678 * 120.66302 * 179.73251 * 9 8 7 11 11 C 1.32212 * 122.49961 * 0.59032 * 10 9 8 12 12 C 1.36480 * 121.50924 * 359.67635 * 11 10 9 13 13 C 1.41122 * 119.10555 * 0.02563 * 12 11 10 14 14 C 1.40932 * 121.10926 * 180.02562 * 13 12 11 15 15 H 1.07999 * 119.99940 * 154.59052 * 14 13 12 16 16 C 1.40175 * 119.99949 * 334.58383 * 14 13 12 17 17 N 1.30688 * 120.00029 * 344.36551 * 16 14 13 18 18 Si 1.86797 * 120.00154 * 164.36019 * 16 14 13 19 19 H 1.48501 * 109.46951 * 60.00458 * 18 16 14 20 20 H 1.48502 * 109.47244 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47318 * 300.00411 * 18 16 14 22 22 C 1.38643 * 120.00673 * 180.02562 * 3 2 1 23 23 H 1.08999 * 109.47125 * 59.99454 * 1 2 3 24 24 H 1.08994 * 109.47401 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47019 * 299.99915 * 1 2 3 26 26 H 1.07999 * 119.88997 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.88194 * 179.72560 * 5 4 3 28 28 H 1.08001 * 119.99192 * 180.27328 * 6 5 4 29 29 H 1.08002 * 119.66926 * 359.97438 * 9 8 7 30 30 H 1.07997 * 119.24283 * 179.70074 * 11 10 9 31 31 H 1.07997 * 120.44916 * 180.02562 * 12 11 10 32 32 H 0.96991 * 120.00288 * 179.97438 * 17 16 14 33 33 H 1.07996 * 120.11773 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2105 1.7168 0.0000 4 6 1.1928 2.6660 0.0058 5 6 1.4986 4.0140 0.0006 6 6 2.8152 4.4279 0.0010 7 6 3.8445 3.4833 0.0005 8 6 5.2558 3.9241 0.0005 9 6 6.1645 3.4064 0.9207 10 7 7.4220 3.7967 0.9151 11 6 7.8837 4.6936 0.0604 12 6 7.0755 5.2664 -0.8784 13 6 5.7162 4.8912 -0.9352 14 6 4.8442 5.4555 -1.8877 15 1 3.9670 4.9117 -2.2057 16 6 5.1154 6.7225 -2.4224 17 7 5.9810 7.5073 -1.8367 18 14 4.2399 7.2894 -3.9720 19 1 2.7742 7.3067 -3.7342 20 1 4.7001 8.6554 -4.3291 21 1 4.5498 6.3565 -5.0851 22 6 3.5363 2.1222 -0.0005 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.1606 2.3484 0.0106 27 1 0.7045 4.7460 0.0006 28 1 3.0497 5.4821 0.0014 29 1 5.8351 2.6745 1.6434 30 1 8.9242 4.9791 0.1059 31 1 7.4708 5.9970 -1.5686 32 1 6.1689 8.3839 -2.2068 33 1 4.3277 1.3874 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241316188.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:53:58 Heat of formation + Delta-G solvation = 27.161364 kcal Electronic energy + Delta-G solvation = -17504.209700 eV Core-core repulsion = 14812.456470 eV Total energy + Delta-G solvation = -2691.753230 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 271.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.64780 -39.26490 -36.09348 -33.86951 -32.24073 -31.75115 -30.48896 -29.27618 -27.87220 -24.39635 -23.89580 -22.98189 -21.89172 -19.54300 -18.38951 -17.44867 -17.10931 -16.56292 -16.19663 -15.95052 -15.68015 -15.06883 -14.64325 -14.51239 -14.45196 -14.17593 -14.10430 -13.58341 -13.39089 -13.22890 -12.98764 -12.77938 -12.39374 -12.33125 -12.01139 -11.63000 -11.28932 -11.10706 -10.64125 -10.22130 -9.93034 -9.76716 -9.17125 -8.73145 -8.28846 -6.55752 0.18527 0.43400 0.63981 0.95737 1.03657 1.36630 1.47468 1.54703 1.56913 2.14368 2.72212 2.86575 3.67745 3.92236 4.04974 4.06733 4.28431 4.32471 4.34767 4.48362 4.53245 4.63076 4.85536 4.89147 4.95899 5.01134 5.12871 5.21593 5.28868 5.43513 5.49482 5.59275 5.77752 5.96154 6.08444 6.16139 6.48138 6.74461 6.77982 7.67805 8.17654 Molecular weight = 271.07amu Principal moments of inertia in cm(-1) A = 0.017472 B = 0.006333 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1602.152764 B = 4419.899297 C = 5628.745495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 S -0.159 6.159 3 C -0.088 4.088 4 C -0.145 4.145 5 C -0.101 4.101 6 C -0.117 4.117 7 C 0.016 3.984 8 C -0.243 4.243 9 C 0.120 3.880 10 N -0.591 5.591 11 C 0.077 3.923 12 C -0.229 4.229 13 C 0.118 3.882 14 C -0.457 4.457 15 H 0.083 0.917 16 C 0.043 3.957 17 N -0.804 5.804 18 Si 0.977 3.023 19 H -0.255 1.255 20 H -0.264 1.264 21 H -0.262 1.262 22 C -0.119 4.119 23 H 0.092 0.908 24 H 0.127 0.873 25 H 0.094 0.906 26 H 0.151 0.849 27 H 0.148 0.852 28 H 0.109 0.891 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.117 0.883 32 H 0.295 0.705 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.150 -6.162 -0.339 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.300 4.300 2 S 0.082 5.918 3 C -0.200 4.200 4 C -0.169 4.169 5 C -0.121 4.121 6 C -0.137 4.137 7 C 0.013 3.987 8 C -0.248 4.248 9 C -0.037 4.037 10 N -0.305 5.305 11 C -0.071 4.071 12 C -0.252 4.252 13 C 0.110 3.890 14 C -0.487 4.487 15 H 0.101 0.899 16 C -0.176 4.176 17 N -0.429 5.429 18 Si 0.798 3.202 19 H -0.179 1.179 20 H -0.188 1.188 21 H -0.187 1.187 22 C -0.142 4.142 23 H 0.111 0.889 24 H 0.145 0.855 25 H 0.113 0.887 26 H 0.169 0.831 27 H 0.166 0.834 28 H 0.128 0.872 29 H 0.159 0.841 30 H 0.160 0.840 31 H 0.135 0.865 32 H 0.106 0.894 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.762 -7.324 0.274 13.021 hybrid contribution -0.997 2.046 -1.153 2.551 sum -11.759 -5.278 -0.879 12.919 Atomic orbital electron populations 1.23750 0.91174 1.08478 1.06568 1.85462 1.10377 1.02769 1.93216 1.21641 0.96007 0.97234 1.05106 1.21382 0.98727 0.92533 1.04230 1.21215 0.95873 0.96108 0.98873 1.21386 0.92790 0.99261 1.00261 1.18569 0.91999 0.92292 0.95803 1.19827 0.93732 1.08626 1.02631 1.22447 0.88695 0.96643 0.95958 1.67381 1.16368 1.18315 1.28480 1.22072 0.99499 0.93285 0.92204 1.21914 0.94508 1.05483 1.03260 1.18110 0.92368 0.88662 0.89818 1.19703 1.08405 1.01248 1.19314 0.89928 1.26809 0.94911 0.95851 1.00027 1.69765 1.27595 1.08666 1.36830 0.85301 0.79605 0.78097 0.77241 1.17871 1.18802 1.18677 1.20847 0.94860 0.94731 1.03782 0.88937 0.85457 0.88709 0.83147 0.83385 0.87248 0.84147 0.84031 0.86484 0.89385 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.01 9.15 113.37 1.04 -0.97 16 2 S -0.16 -4.12 22.56 -56.49 -1.27 -5.39 16 3 C -0.09 -2.82 6.11 22.59 0.14 -2.69 16 4 C -0.15 -4.11 9.36 22.49 0.21 -3.90 16 5 C -0.10 -3.15 10.02 22.21 0.22 -2.93 16 6 C -0.12 -4.63 8.07 22.57 0.18 -4.44 16 7 C 0.02 0.68 4.99 -20.06 -0.10 0.58 16 8 C -0.24 -11.89 5.54 -19.49 -0.11 -12.00 16 9 C 0.12 5.71 10.71 84.97 0.91 6.62 16 10 N -0.59 -29.24 10.32 -196.20 -2.02 -31.26 16 11 C 0.08 3.78 11.09 84.22 0.93 4.71 16 12 C -0.23 -11.92 8.72 22.57 0.20 -11.73 16 13 C 0.12 6.22 5.59 -20.92 -0.12 6.10 16 14 C -0.46 -23.07 7.29 23.40 0.17 -22.90 16 15 H 0.08 4.12 6.70 -2.91 -0.02 4.10 16 16 C 0.04 2.01 5.21 85.33 0.44 2.45 16 17 N -0.80 -39.14 10.95 21.86 0.24 -38.90 16 18 Si 0.98 35.63 29.59 68.60 2.03 37.66 16 19 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.26 -9.04 7.11 99.48 0.71 -8.33 16 21 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 22 C -0.12 -4.57 9.29 22.68 0.21 -4.36 16 23 H 0.09 1.28 7.76 -2.39 -0.02 1.26 16 24 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.09 1.26 7.73 -2.39 -0.02 1.24 16 26 H 0.15 3.08 5.86 -2.91 -0.02 3.07 16 27 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 28 H 0.11 4.73 7.36 -2.91 -0.02 4.71 16 29 H 0.14 5.96 8.05 -2.91 -0.02 5.94 16 30 H 0.14 6.02 8.06 -2.91 -0.02 6.00 16 31 H 0.12 6.16 6.27 -2.91 -0.02 6.14 16 32 H 0.30 12.91 8.29 -92.72 -0.77 12.14 16 33 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -59.29 296.21 4.43 -54.86 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: 1.13 Total: 28.47 kcal Atomic # 6 Polarization: -49.78 SS G_CDS: 4.33 Total: -45.45 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -1.78 Total: -70.16 kcal Atomic # 14 Polarization: 35.63 SS G_CDS: 2.03 Total: 37.66 kcal Atomic # 16 Polarization: -4.12 SS G_CDS: -1.27 Total: -5.39 kcal Total: -59.29 4.43 -54.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241316188.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.023 kcal (2) G-P(sol) polarization free energy of solvation -59.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds